Wall clock time and date at job start Mon Mar 30 2020 05:32:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09003 * 109.47053 * 2 1 4 4 C 1.50699 * 109.47041 * 119.99961 * 2 1 3 5 5 H 1.08000 * 120.00178 * 120.00494 * 4 2 1 6 6 C 1.37886 * 120.00111 * 299.99665 * 4 2 1 7 7 N 1.31504 * 120.00323 * 180.02562 * 6 4 2 8 8 Si 1.86802 * 119.99499 * 0.02562 * 6 4 2 9 9 H 1.48499 * 109.47175 * 89.99920 * 8 6 4 10 10 H 1.48501 * 109.46864 * 209.99758 * 8 6 4 11 11 H 1.48496 * 109.47297 * 329.99639 * 8 6 4 12 12 N 1.46503 * 109.47121 * 239.99675 * 2 1 3 13 13 C 1.46496 * 119.99879 * 306.05024 * 12 2 1 14 14 C 1.38992 * 119.99553 * 126.04918 * 12 2 1 15 15 C 1.38997 * 119.66250 * 12.64862 * 14 12 2 16 16 C 1.38515 * 119.25988 * 179.75556 * 15 14 12 17 17 N 1.48010 * 120.70535 * 180.23921 * 16 15 14 18 18 O 1.21804 * 119.99564 * 180.26683 * 17 16 15 19 19 O 1.21793 * 120.00187 * 0.27163 * 17 16 15 20 20 C 1.38553 * 118.58484 * 0.50070 * 16 15 14 21 21 C 1.38957 * 119.26304 * 359.73813 * 20 16 15 22 22 N 1.39001 * 119.65465 * 179.97438 * 21 20 16 23 23 N 1.32469 * 119.65639 * 192.91444 * 14 12 2 24 24 H 1.08994 * 109.46734 * 300.00323 * 1 2 3 25 25 H 1.08996 * 109.47282 * 60.00290 * 1 2 3 26 26 H 1.09001 * 109.46587 * 180.02562 * 1 2 3 27 27 H 0.97003 * 120.00412 * 180.02562 * 7 6 4 28 28 H 1.09003 * 109.47442 * 90.00291 * 13 12 2 29 29 H 1.09007 * 109.46809 * 209.99626 * 13 12 2 30 30 H 1.08997 * 109.47405 * 329.99515 * 13 12 2 31 31 H 1.08002 * 120.37264 * 359.96891 * 15 14 12 32 32 H 1.08003 * 120.36752 * 179.71128 * 20 16 15 33 33 H 0.97006 * 119.99407 * 180.02562 * 22 21 20 34 34 H 0.96993 * 120.00708 * 0.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6533 -1.5884 1.1314 6 6 1.6993 -0.2393 2.4828 7 7 2.1380 -0.8589 3.5566 8 14 0.6248 1.2792 2.6541 9 1 -0.8028 0.8728 2.6997 10 1 0.9760 1.9953 3.9067 11 1 0.8472 2.1765 1.4920 12 7 2.0184 -0.6907 -1.1962 13 6 1.5586 -2.0488 -1.4968 14 6 2.9179 -0.0574 -2.0457 15 6 3.5513 1.1084 -1.6313 16 6 4.4500 1.7299 -2.4826 17 7 5.1465 2.9697 -2.0721 18 8 5.9306 3.5081 -2.8329 19 8 4.9357 3.4513 -0.9735 20 6 4.6790 1.1693 -3.7288 21 6 4.0087 0.0048 -4.0833 22 7 4.2319 -0.5643 -5.3317 23 7 3.1586 -0.5682 -3.2440 24 1 -0.3632 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3632 -1.0277 0.0005 27 1 1.9034 -0.5277 4.4376 28 1 0.6612 -2.0004 -2.1137 29 1 2.3401 -2.5863 -2.0339 30 1 1.3325 -2.5701 -0.5667 31 1 3.3477 1.5232 -0.6551 32 1 5.3703 1.6325 -4.4173 33 1 3.7664 -1.3770 -5.5844 34 1 4.8529 -0.1489 -5.9501 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000235062829.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:32:48 Heat of formation + Delta-G solvation = 39.787386 kcal Electronic energy + Delta-G solvation = -20362.141695 eV Core-core repulsion = 17105.508550 eV Total energy + Delta-G solvation = -3256.633145 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.36146 -41.51566 -38.68918 -37.74547 -35.77659 -34.96823 -33.76223 -31.80119 -30.44568 -28.36753 -27.26145 -26.82559 -24.58263 -23.37911 -21.77463 -20.21761 -20.01938 -18.95130 -18.72791 -18.33431 -17.78281 -17.12895 -16.90463 -16.51201 -16.03727 -15.83232 -15.18125 -14.75452 -14.54311 -14.04153 -13.73200 -13.62685 -13.02985 -12.93974 -12.79423 -12.58697 -12.47301 -12.35707 -12.31955 -12.04185 -11.69535 -11.53860 -11.30399 -10.90884 -10.79791 -9.53865 -8.47911 -8.36168 -6.43055 -1.27837 0.18534 0.22282 0.41654 1.27899 1.37165 1.44058 1.82336 2.26020 2.51435 2.59818 2.98524 3.56556 3.65313 3.86571 3.88817 4.24827 4.35966 4.44914 4.53432 4.59014 4.73654 4.76724 4.81297 4.92378 5.00938 5.22369 5.27597 5.43116 5.75706 6.12905 6.18530 6.45703 6.47612 6.54310 6.63717 7.17006 7.24495 8.79816 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.018246 B = 0.007147 C = 0.005598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1534.243081 B = 3916.989898 C = 5000.177590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.241 3.759 3 H 0.045 0.955 4 C -0.531 4.531 5 H 0.040 0.960 6 C 0.026 3.974 7 N -0.938 5.938 8 Si 0.937 3.063 9 H -0.256 1.256 10 H -0.298 1.298 11 H -0.249 1.249 12 N -0.577 5.577 13 C 0.109 3.891 14 C 0.460 3.540 15 C -0.263 4.263 16 C 0.077 3.923 17 N 0.026 4.974 18 O -0.118 6.118 19 O -0.207 6.207 20 C -0.246 4.246 21 C 0.464 3.536 22 N -0.814 5.814 23 N -0.577 5.577 24 H 0.047 0.953 25 H 0.061 0.939 26 H 0.067 0.933 27 H 0.269 0.731 28 H 0.065 0.935 29 H 0.070 0.930 30 H 0.062 0.938 31 H 0.137 0.863 32 H 0.181 0.819 33 H 0.418 0.582 34 H 0.428 0.572 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.645 1.364 -18.854 18.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.138 3.862 3 H 0.062 0.938 4 C -0.570 4.570 5 H 0.059 0.941 6 C -0.174 4.174 7 N -0.577 5.577 8 Si 0.764 3.236 9 H -0.181 1.181 10 H -0.225 1.225 11 H -0.173 1.173 12 N -0.284 5.284 13 C -0.033 4.033 14 C 0.220 3.780 15 C -0.291 4.291 16 C -0.013 4.013 17 N 0.546 4.454 18 O -0.347 6.347 19 O -0.410 6.410 20 C -0.275 4.275 21 C 0.219 3.781 22 N -0.360 5.360 23 N -0.308 5.308 24 H 0.065 0.935 25 H 0.080 0.920 26 H 0.086 0.914 27 H 0.078 0.922 28 H 0.084 0.916 29 H 0.089 0.911 30 H 0.081 0.919 31 H 0.155 0.845 32 H 0.198 0.802 33 H 0.249 0.751 34 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges -0.326 -0.094 -18.835 18.838 hybrid contribution 0.398 1.377 1.092 1.802 sum 0.072 1.283 -17.742 17.789 Atomic orbital electron populations 1.22358 0.96197 1.02550 1.00372 1.19221 0.92077 0.93033 0.81859 0.93766 1.21353 1.32016 1.13387 0.90206 0.94147 1.25663 0.96958 0.99531 0.95205 1.69998 1.46807 1.42159 0.98749 0.86036 0.79718 0.80070 0.77812 1.18119 1.22529 1.17346 1.46761 1.43232 1.15920 1.22536 1.21520 0.99867 0.81136 1.00784 1.17618 0.86872 0.86934 0.86619 1.20964 1.04053 1.01031 1.03095 1.20779 0.97332 0.86404 0.96758 1.43784 0.99416 1.02130 1.00064 1.94427 1.28903 1.61790 1.49579 1.94612 1.70222 1.67312 1.08862 1.20901 1.09926 1.00178 0.96478 1.17737 0.86471 0.86663 0.87180 1.42087 1.50425 1.31485 1.11995 1.66689 1.23792 1.36960 1.03337 0.93479 0.91960 0.91377 0.92183 0.91630 0.91093 0.91915 0.84498 0.80151 0.75080 0.73766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.98 8.58 71.98 0.62 -5.37 16 2 C 0.24 10.59 2.04 44.25 0.09 10.68 16 3 H 0.04 2.04 4.64 -2.39 -0.01 2.02 16 4 C -0.53 -28.57 8.67 25.60 0.22 -28.35 16 5 H 0.04 2.45 8.00 -2.91 -0.02 2.42 16 6 C 0.03 1.43 5.45 84.66 0.46 1.90 16 7 N -0.94 -56.61 13.96 21.45 0.30 -56.31 16 8 Si 0.94 42.71 24.37 68.60 1.67 44.38 16 9 H -0.26 -10.77 6.87 99.48 0.68 -10.09 16 10 H -0.30 -13.82 7.11 99.48 0.71 -13.11 16 11 H -0.25 -10.68 6.53 99.48 0.65 -10.03 16 12 N -0.58 -22.34 2.87 -708.95 -2.03 -24.37 16 13 C 0.11 3.58 9.21 127.77 1.18 4.76 16 14 C 0.46 16.81 7.29 133.01 0.97 17.78 16 15 C -0.26 -10.07 8.73 22.52 0.20 -9.87 16 16 C 0.08 2.56 6.89 36.52 0.25 2.81 16 17 N 0.03 0.91 4.45 -46.13 -0.21 0.71 16 18 O -0.12 -3.75 18.54 18.88 0.35 -3.40 16 19 O -0.21 -8.28 18.54 18.89 0.35 -7.93 16 20 C -0.25 -6.19 9.45 22.52 0.21 -5.97 16 21 C 0.46 10.98 7.74 132.99 1.03 12.01 16 22 N -0.81 -10.40 9.07 -55.50 -0.50 -10.91 16 23 N -0.58 -17.42 9.33 -190.70 -1.78 -19.20 16 24 H 0.05 1.86 3.27 -2.39 -0.01 1.85 16 25 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 26 H 0.07 2.47 7.50 -2.39 -0.02 2.45 16 27 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 28 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 29 H 0.07 2.17 7.61 -2.38 -0.02 2.15 16 30 H 0.06 2.25 7.44 -2.39 -0.02 2.24 16 31 H 0.14 5.93 5.67 -2.91 -0.02 5.91 16 32 H 0.18 3.30 7.69 -2.91 -0.02 3.28 16 33 H 0.42 4.38 8.95 -92.70 -0.83 3.55 16 34 H 0.43 2.66 8.82 -92.71 -0.82 1.85 16 Total: -1.00 -66.68 289.89 2.83 -63.85 By element: Atomic # 1 Polarization: 13.36 SS G_CDS: -0.55 Total: 12.81 kcal Atomic # 6 Polarization: -4.86 SS G_CDS: 5.23 Total: 0.37 kcal Atomic # 7 Polarization: -105.86 SS G_CDS: -4.22 Total: -110.09 kcal Atomic # 8 Polarization: -12.03 SS G_CDS: 0.70 Total: -11.33 kcal Atomic # 14 Polarization: 42.71 SS G_CDS: 1.67 Total: 44.38 kcal Total: -66.68 2.83 -63.85 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235062829.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.640 kcal (2) G-P(sol) polarization free energy of solvation -66.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.853 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds