Wall clock time and date at job start Mon Mar 30 2020 05:32:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08994 * 109.47756 * 2 1 4 4 C 1.50701 * 109.46735 * 239.99723 * 2 1 3 5 5 H 1.08001 * 120.00055 * 239.99952 * 4 2 1 6 6 C 1.37873 * 119.99874 * 59.72992 * 4 2 1 7 7 N 1.31518 * 120.00293 * 0.27516 * 6 4 2 8 8 Si 1.86799 * 120.00128 * 180.27386 * 6 4 2 9 9 H 1.48501 * 109.47253 * 90.00126 * 8 6 4 10 10 H 1.48504 * 109.47118 * 210.00014 * 8 6 4 11 11 H 1.48502 * 109.47159 * 329.99884 * 8 6 4 12 12 N 1.46498 * 109.47078 * 120.00305 * 2 1 3 13 13 C 1.46503 * 120.00255 * 66.15375 * 12 2 1 14 14 C 1.38991 * 120.00352 * 246.15731 * 12 2 1 15 15 C 1.39009 * 119.65610 * 12.76297 * 14 12 2 16 16 C 1.38507 * 119.25815 * 179.75327 * 15 14 12 17 17 N 1.48007 * 120.70705 * 180.23524 * 16 15 14 18 18 O 1.21797 * 120.00361 * 180.27566 * 17 16 15 19 19 O 1.21804 * 119.99865 * 0.28223 * 17 16 15 20 20 C 1.38553 * 118.59096 * 0.51006 * 16 15 14 21 21 C 1.38965 * 119.25825 * 359.72808 * 20 16 15 22 22 N 1.38997 * 119.65606 * 179.97438 * 21 20 16 23 23 N 1.32464 * 119.66322 * 193.03323 * 14 12 2 24 24 H 1.09002 * 109.46692 * 300.00370 * 1 2 3 25 25 H 1.09002 * 109.47118 * 59.99260 * 1 2 3 26 26 H 1.08994 * 109.47756 * 180.02562 * 1 2 3 27 27 H 0.96996 * 120.00562 * 180.02562 * 7 6 4 28 28 H 1.09007 * 109.46866 * 90.00050 * 13 12 2 29 29 H 1.08999 * 109.47389 * 210.00087 * 13 12 2 30 30 H 1.08999 * 109.47184 * 330.00444 * 13 12 2 31 31 H 1.08003 * 120.36679 * 359.97438 * 15 14 12 32 32 H 1.07999 * 120.37020 * 179.70713 * 20 16 15 33 33 H 0.97003 * 119.99842 * 180.02562 * 22 21 20 34 34 H 0.96997 * 120.00369 * 0.02648 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0322 -0.7105 -1.2305 5 1 2.6531 -1.5886 -1.1314 6 6 1.6945 -0.2427 -2.4827 7 7 0.9385 0.8267 -2.6034 8 14 2.3107 -1.1278 -4.0079 9 1 1.3304 -2.1701 -4.4054 10 1 2.4719 -0.1518 -5.1154 11 1 3.6197 -1.7652 -3.7154 12 7 2.0183 -0.6907 1.1961 13 6 1.7789 -2.1264 1.3620 14 6 2.7087 0.0162 2.1737 15 6 2.7046 1.4060 2.1495 16 6 3.3911 2.1022 3.1306 17 7 3.4038 3.5821 3.1386 18 8 4.0158 4.1813 4.0046 19 8 2.8021 4.2010 2.2792 20 6 4.0704 1.3836 4.1011 21 6 4.0384 -0.0052 4.0650 22 7 4.7175 -0.7343 5.0342 23 7 3.3682 -0.6415 3.1156 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5140 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 0.7005 1.1555 -3.4843 28 1 2.6058 -2.6856 0.9241 29 1 1.7029 -2.3619 2.4236 30 1 0.8499 -2.4001 0.8618 31 1 2.1692 1.9371 1.3764 32 1 4.6190 1.8971 4.8769 33 1 4.6987 -1.7039 5.0135 34 1 5.2100 -0.2735 5.7313 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000235419323.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:32:54 Heat of formation + Delta-G solvation = 49.479429 kcal Electronic energy + Delta-G solvation = -20246.527288 eV Core-core repulsion = 16990.314422 eV Total energy + Delta-G solvation = -3256.212867 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.90534 -40.12244 -37.06491 -36.26850 -34.48914 -33.33771 -32.07671 -29.38825 -29.09812 -26.92840 -25.44038 -25.32648 -23.00554 -21.95921 -20.23016 -18.76284 -18.59753 -17.26480 -17.21139 -16.64827 -16.15550 -15.66562 -15.34072 -14.97758 -14.65912 -14.50851 -13.44340 -13.23154 -12.73372 -12.22730 -11.70244 -11.48362 -11.33330 -11.27561 -11.12900 -11.03140 -10.90117 -10.86940 -10.75438 -10.45676 -10.26413 -10.16612 -9.56980 -9.26102 -8.61621 -8.29876 -7.02049 -6.23600 -4.34055 0.15904 1.55791 1.61859 1.84188 3.17948 3.21514 3.26290 3.30466 3.73531 3.96344 4.26805 4.95625 5.03187 5.06061 5.13098 5.28028 5.59285 5.85826 6.00831 6.10183 6.19866 6.33626 6.53855 6.63926 6.68234 6.81238 7.05094 7.10084 7.24602 7.51231 7.63188 7.79493 7.93186 7.94681 8.18213 8.39636 8.71677 9.33752 10.80539 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.019339 B = 0.006123 C = 0.005164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1447.498881 B = 4571.755519 C = 5420.373061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.262 3.738 3 H 0.055 0.945 4 C -0.533 4.533 5 H 0.063 0.937 6 C 0.068 3.932 7 N -0.885 5.885 8 Si 0.902 3.098 9 H -0.278 1.278 10 H -0.284 1.284 11 H -0.274 1.274 12 N -0.566 5.566 13 C 0.109 3.891 14 C 0.466 3.534 15 C -0.227 4.227 16 C 0.084 3.916 17 N 0.027 4.973 18 O -0.165 6.165 19 O -0.147 6.147 20 C -0.276 4.276 21 C 0.460 3.540 22 N -0.846 5.846 23 N -0.579 5.579 24 H 0.015 0.985 25 H 0.098 0.902 26 H 0.034 0.966 27 H 0.267 0.733 28 H 0.047 0.953 29 H 0.057 0.943 30 H 0.070 0.930 31 H 0.164 0.836 32 H 0.146 0.854 33 H 0.406 0.594 34 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.826 -3.021 11.857 12.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.163 3.837 3 H 0.073 0.927 4 C -0.571 4.571 5 H 0.082 0.918 6 C -0.136 4.136 7 N -0.522 5.522 8 Si 0.729 3.271 9 H -0.204 1.204 10 H -0.209 1.209 11 H -0.199 1.199 12 N -0.271 5.271 13 C -0.034 4.034 14 C 0.224 3.776 15 C -0.255 4.255 16 C -0.005 4.005 17 N 0.548 4.452 18 O -0.380 6.380 19 O -0.366 6.366 20 C -0.305 4.305 21 C 0.219 3.781 22 N -0.390 5.390 23 N -0.309 5.309 24 H 0.034 0.966 25 H 0.117 0.883 26 H 0.053 0.947 27 H 0.077 0.923 28 H 0.066 0.934 29 H 0.076 0.924 30 H 0.089 0.911 31 H 0.181 0.819 32 H 0.164 0.836 33 H 0.236 0.764 34 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges 3.560 -4.591 11.464 12.851 hybrid contribution 0.568 0.593 -0.612 1.024 sum 4.128 -3.997 10.851 12.279 Atomic orbital electron populations 1.22159 0.97598 1.00021 1.01248 1.19211 0.91513 0.93522 0.79493 0.92701 1.21252 1.32462 1.13645 0.89769 0.91846 1.24885 0.94689 0.94921 0.99062 1.69849 1.35722 1.22343 1.24277 0.86430 0.79236 0.79351 0.82058 1.20442 1.20931 1.19883 1.47463 1.52814 1.08587 1.18283 1.21393 1.01100 0.80554 1.00388 1.17748 0.86826 0.86561 0.86471 1.21192 1.07709 0.93959 1.02629 1.20635 1.02258 0.78617 0.99041 1.43643 0.98410 1.03782 0.99344 1.94476 1.42211 1.69964 1.31309 1.94579 1.42332 1.68196 1.31486 1.20436 1.12142 0.92915 1.05000 1.17483 0.87474 0.86457 0.86707 1.42087 1.57133 1.09527 1.30274 1.66693 1.16887 1.39874 1.07470 0.96612 0.88343 0.94692 0.92315 0.93423 0.92397 0.91101 0.81906 0.83648 0.76439 0.76088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.35 9.04 37.16 0.34 -3.01 16 2 C 0.26 6.05 2.44 -69.08 -0.17 5.88 16 3 H 0.06 1.37 5.59 -51.93 -0.29 1.08 16 4 C -0.53 -13.46 8.30 -34.44 -0.29 -13.74 16 5 H 0.06 1.61 7.31 -52.49 -0.38 1.23 16 6 C 0.07 1.74 5.30 -17.82 -0.09 1.65 16 7 N -0.88 -23.44 11.31 55.43 0.63 -22.81 16 8 Si 0.90 20.16 29.54 -169.99 -5.02 15.14 16 9 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 10 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 11 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 12 N -0.57 -11.42 2.87 -175.44 -0.50 -11.93 16 13 C 0.11 1.91 9.36 59.85 0.56 2.47 16 14 C 0.47 8.97 7.29 -155.02 -1.13 7.84 16 15 C -0.23 -4.37 8.73 -39.20 -0.34 -4.71 16 16 C 0.08 1.49 6.89 -79.74 -0.55 0.94 16 17 N 0.03 0.49 4.45 34.07 0.15 0.65 16 18 O -0.16 -2.89 18.54 -29.46 -0.55 -3.44 16 19 O -0.15 -2.87 18.54 -29.46 -0.55 -3.42 16 20 C -0.28 -4.14 9.45 -39.20 -0.37 -4.51 16 21 C 0.46 6.64 7.74 -155.01 -1.20 5.44 16 22 N -0.85 -8.10 9.07 31.11 0.28 -7.81 16 23 N -0.58 -9.90 9.33 -11.62 -0.11 -10.01 16 24 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 25 H 0.10 2.40 6.06 -51.93 -0.31 2.08 16 26 H 0.03 0.73 6.92 -51.93 -0.36 0.37 16 27 H 0.27 6.77 8.31 -40.82 -0.34 6.43 16 28 H 0.05 0.84 7.99 -51.92 -0.42 0.42 16 29 H 0.06 0.91 7.61 -51.93 -0.40 0.51 16 30 H 0.07 1.22 6.77 -51.93 -0.35 0.87 16 31 H 0.16 3.34 5.67 -52.48 -0.30 3.04 16 32 H 0.15 1.83 7.69 -52.49 -0.40 1.43 16 33 H 0.41 3.42 8.95 -40.82 -0.37 3.05 16 34 H 0.41 2.70 8.82 -40.82 -0.36 2.34 16 LS Contribution 295.37 15.07 4.45 4.45 Total: -1.00 -27.67 295.37 -7.95 -35.63 By element: Atomic # 1 Polarization: 8.80 SS G_CDS: -3.49 Total: 5.31 kcal Atomic # 6 Polarization: 1.50 SS G_CDS: -3.25 Total: -1.75 kcal Atomic # 7 Polarization: -52.36 SS G_CDS: 0.45 Total: -51.92 kcal Atomic # 8 Polarization: -5.77 SS G_CDS: -1.09 Total: -6.86 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -5.02 Total: 15.14 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -27.67 -7.95 -35.63 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235419323.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.105 kcal (2) G-P(sol) polarization free energy of solvation -27.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.626 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds