Wall clock time and date at job start Mon Mar 30 2020 05:32:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08994 * 109.47756 * 2 1 4 4 C 1.50701 * 109.46735 * 239.99723 * 2 1 3 5 5 H 1.08001 * 120.00055 * 239.99952 * 4 2 1 6 6 C 1.37873 * 119.99874 * 59.72992 * 4 2 1 7 7 N 1.31518 * 120.00293 * 0.27516 * 6 4 2 8 8 Si 1.86799 * 120.00128 * 180.27386 * 6 4 2 9 9 H 1.48501 * 109.47253 * 90.00126 * 8 6 4 10 10 H 1.48504 * 109.47118 * 210.00014 * 8 6 4 11 11 H 1.48502 * 109.47159 * 329.99884 * 8 6 4 12 12 N 1.46498 * 109.47078 * 120.00305 * 2 1 3 13 13 C 1.46503 * 120.00255 * 66.15375 * 12 2 1 14 14 C 1.38991 * 120.00352 * 246.15731 * 12 2 1 15 15 C 1.39009 * 119.65610 * 12.76297 * 14 12 2 16 16 C 1.38507 * 119.25815 * 179.75327 * 15 14 12 17 17 N 1.48007 * 120.70705 * 180.23524 * 16 15 14 18 18 O 1.21797 * 120.00361 * 180.27566 * 17 16 15 19 19 O 1.21804 * 119.99865 * 0.28223 * 17 16 15 20 20 C 1.38553 * 118.59096 * 0.51006 * 16 15 14 21 21 C 1.38965 * 119.25825 * 359.72808 * 20 16 15 22 22 N 1.38997 * 119.65606 * 179.97438 * 21 20 16 23 23 N 1.32464 * 119.66322 * 193.03323 * 14 12 2 24 24 H 1.09002 * 109.46692 * 300.00370 * 1 2 3 25 25 H 1.09002 * 109.47118 * 59.99260 * 1 2 3 26 26 H 1.08994 * 109.47756 * 180.02562 * 1 2 3 27 27 H 0.96996 * 120.00562 * 180.02562 * 7 6 4 28 28 H 1.09007 * 109.46866 * 90.00050 * 13 12 2 29 29 H 1.08999 * 109.47389 * 210.00087 * 13 12 2 30 30 H 1.08999 * 109.47184 * 330.00444 * 13 12 2 31 31 H 1.08003 * 120.36679 * 359.97438 * 15 14 12 32 32 H 1.07999 * 120.37020 * 179.70713 * 20 16 15 33 33 H 0.97003 * 119.99842 * 180.02562 * 22 21 20 34 34 H 0.96997 * 120.00369 * 0.02648 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0322 -0.7105 -1.2305 5 1 2.6531 -1.5886 -1.1314 6 6 1.6945 -0.2427 -2.4827 7 7 0.9385 0.8267 -2.6034 8 14 2.3107 -1.1278 -4.0079 9 1 1.3304 -2.1701 -4.4054 10 1 2.4719 -0.1518 -5.1154 11 1 3.6197 -1.7652 -3.7154 12 7 2.0183 -0.6907 1.1961 13 6 1.7789 -2.1264 1.3620 14 6 2.7087 0.0162 2.1737 15 6 2.7046 1.4060 2.1495 16 6 3.3911 2.1022 3.1306 17 7 3.4038 3.5821 3.1386 18 8 4.0158 4.1813 4.0046 19 8 2.8021 4.2010 2.2792 20 6 4.0704 1.3836 4.1011 21 6 4.0384 -0.0052 4.0650 22 7 4.7175 -0.7343 5.0342 23 7 3.3682 -0.6415 3.1156 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5140 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 0.7005 1.1555 -3.4843 28 1 2.6058 -2.6856 0.9241 29 1 1.7029 -2.3619 2.4236 30 1 0.8499 -2.4001 0.8618 31 1 2.1692 1.9371 1.3764 32 1 4.6190 1.8971 4.8769 33 1 4.6987 -1.7039 5.0135 34 1 5.2100 -0.2735 5.7313 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000235419323.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:32:53 Heat of formation + Delta-G solvation = 33.652802 kcal Electronic energy + Delta-G solvation = -20247.213583 eV Core-core repulsion = 16990.314422 eV Total energy + Delta-G solvation = -3256.899161 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -43.34918 -41.47071 -38.55081 -37.73138 -35.76306 -34.98092 -33.58173 -31.06218 -30.41025 -28.31341 -27.32612 -26.81656 -24.44999 -23.36527 -21.82069 -20.18553 -20.00449 -18.72125 -18.62385 -18.18911 -17.67385 -17.08071 -16.69221 -16.44175 -16.01829 -15.92955 -15.05354 -14.65200 -14.40404 -13.61454 -13.48687 -13.08918 -12.94125 -12.79401 -12.76211 -12.58194 -12.45946 -12.34701 -12.33264 -12.12875 -12.07082 -11.61262 -11.13546 -10.86674 -10.55175 -9.50588 -8.48343 -8.14497 -6.34851 -1.25941 0.21554 0.24148 0.43927 1.40745 1.42676 1.51581 1.91867 2.39217 2.55653 2.63928 3.09802 3.61368 3.68605 3.90437 3.92527 4.29881 4.47269 4.63283 4.71737 4.80442 4.82804 4.90002 4.99304 5.03789 5.23676 5.35539 5.59290 5.70439 5.95865 6.08028 6.21952 6.47483 6.51904 6.58854 6.78276 7.20672 7.37087 8.84988 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.019339 B = 0.006123 C = 0.005164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1447.498881 B = 4571.755519 C = 5420.373061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.270 3.730 3 H 0.027 0.973 4 C -0.542 4.542 5 H 0.059 0.941 6 C 0.023 3.977 7 N -0.911 5.911 8 Si 0.960 3.040 9 H -0.270 1.270 10 H -0.284 1.284 11 H -0.273 1.273 12 N -0.581 5.581 13 C 0.114 3.886 14 C 0.457 3.543 15 C -0.262 4.262 16 C 0.077 3.923 17 N 0.027 4.973 18 O -0.118 6.118 19 O -0.206 6.206 20 C -0.250 4.250 21 C 0.463 3.537 22 N -0.815 5.815 23 N -0.581 5.581 24 H 0.024 0.976 25 H 0.073 0.927 26 H 0.042 0.958 27 H 0.267 0.733 28 H 0.043 0.957 29 H 0.077 0.923 30 H 0.069 0.931 31 H 0.136 0.864 32 H 0.180 0.820 33 H 0.417 0.583 34 H 0.428 0.572 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.545 -4.362 14.184 15.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.169 3.831 3 H 0.045 0.955 4 C -0.581 4.581 5 H 0.077 0.923 6 C -0.178 4.178 7 N -0.549 5.549 8 Si 0.786 3.214 9 H -0.195 1.195 10 H -0.210 1.210 11 H -0.198 1.198 12 N -0.288 5.288 13 C -0.028 4.028 14 C 0.217 3.783 15 C -0.291 4.291 16 C -0.012 4.012 17 N 0.547 4.453 18 O -0.348 6.348 19 O -0.410 6.410 20 C -0.279 4.279 21 C 0.219 3.781 22 N -0.361 5.361 23 N -0.312 5.312 24 H 0.043 0.957 25 H 0.092 0.908 26 H 0.061 0.939 27 H 0.076 0.924 28 H 0.062 0.938 29 H 0.095 0.905 30 H 0.087 0.913 31 H 0.153 0.847 32 H 0.198 0.802 33 H 0.248 0.752 34 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges 5.229 -5.949 13.737 15.857 hybrid contribution 0.247 1.015 -0.999 1.445 sum 5.477 -4.935 12.738 14.718 Atomic orbital electron populations 1.21960 0.97183 1.00164 1.00416 1.18831 0.91751 0.92220 0.80343 0.95515 1.21506 1.32206 1.13458 0.90901 0.92311 1.25612 0.94931 0.95562 1.01664 1.69975 1.36742 1.23514 1.24702 0.85519 0.78745 0.78348 0.78801 1.19534 1.21009 1.19819 1.47216 1.54151 1.09363 1.18043 1.21429 1.00797 0.79077 1.01540 1.17721 0.87275 0.86385 0.86957 1.20934 1.10213 0.94274 1.03678 1.20771 1.02834 0.78045 0.99593 1.43775 0.98190 1.04202 0.99155 1.94421 1.40050 1.70222 1.30065 1.94613 1.44822 1.68607 1.32948 1.20872 1.09863 0.93157 1.03964 1.17758 0.86916 0.86701 0.86734 1.42073 1.55090 1.10119 1.28798 1.66724 1.17029 1.39822 1.07587 0.95668 0.90827 0.93892 0.92393 0.93812 0.90469 0.91276 0.84672 0.80220 0.75151 0.73801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.34 9.04 71.98 0.65 -5.69 16 2 C 0.27 12.96 2.44 44.25 0.11 13.07 16 3 H 0.03 1.44 5.59 -2.39 -0.01 1.43 16 4 C -0.54 -28.06 8.30 25.60 0.21 -27.85 16 5 H 0.06 3.03 7.31 -2.91 -0.02 3.00 16 6 C 0.02 1.20 5.30 84.65 0.45 1.65 16 7 N -0.91 -49.91 11.31 21.45 0.24 -49.67 16 8 Si 0.96 41.80 29.54 68.60 2.03 43.82 16 9 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 10 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 11 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 12 N -0.58 -23.80 2.87 -708.96 -2.03 -25.84 16 13 C 0.11 3.93 9.36 127.77 1.20 5.12 16 14 C 0.46 17.61 7.29 133.02 0.97 18.58 16 15 C -0.26 -10.43 8.73 22.52 0.20 -10.24 16 16 C 0.08 2.66 6.89 36.52 0.25 2.92 16 17 N 0.03 0.96 4.45 -46.14 -0.21 0.76 16 18 O -0.12 -3.86 18.54 18.89 0.35 -3.51 16 19 O -0.21 -8.44 18.54 18.88 0.35 -8.09 16 20 C -0.25 -6.62 9.45 22.52 0.21 -6.41 16 21 C 0.46 11.70 7.74 133.00 1.03 12.73 16 22 N -0.81 -11.57 9.07 -55.49 -0.50 -12.08 16 23 N -0.58 -18.68 9.33 -190.69 -1.78 -20.46 16 24 H 0.02 1.05 8.14 -2.39 -0.02 1.03 16 25 H 0.07 3.74 6.06 -2.39 -0.01 3.73 16 26 H 0.04 1.83 6.92 -2.39 -0.02 1.82 16 27 H 0.27 13.94 8.31 -92.71 -0.77 13.17 16 28 H 0.04 1.51 7.99 -2.38 -0.02 1.49 16 29 H 0.08 2.31 7.61 -2.39 -0.02 2.29 16 30 H 0.07 2.35 6.77 -2.39 -0.02 2.34 16 31 H 0.14 6.07 5.67 -2.91 -0.02 6.06 16 32 H 0.18 3.51 7.69 -2.91 -0.02 3.49 16 33 H 0.42 4.98 8.95 -92.71 -0.83 4.15 16 34 H 0.43 3.19 8.82 -92.71 -0.82 2.37 16 Total: -1.00 -61.30 295.37 3.25 -58.05 By element: Atomic # 1 Polarization: 13.59 SS G_CDS: -0.47 Total: 13.11 kcal Atomic # 6 Polarization: -1.38 SS G_CDS: 5.28 Total: 3.90 kcal Atomic # 7 Polarization: -103.00 SS G_CDS: -4.28 Total: -107.28 kcal Atomic # 8 Polarization: -12.30 SS G_CDS: 0.70 Total: -11.60 kcal Atomic # 14 Polarization: 41.80 SS G_CDS: 2.03 Total: 43.82 kcal Total: -61.30 3.25 -58.05 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235419323.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.705 kcal (2) G-P(sol) polarization free energy of solvation -61.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.052 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds