Wall clock time and date at job start Mon Mar 30 2020 05:14:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.39868 * 126.03767 * 2 1 4 4 N 1.30844 * 108.19764 * 179.97438 * 3 2 1 5 5 N 1.40078 * 108.20890 * 0.02562 * 4 3 2 6 6 C 1.46495 * 126.04021 * 179.97438 * 5 4 3 7 7 C 1.52997 * 109.47240 * 305.02409 * 6 5 4 8 8 N 1.46501 * 109.47523 * 179.97438 * 7 6 5 9 9 C 1.34773 * 120.00006 * 180.02562 * 8 7 6 10 10 O 1.21430 * 120.00428 * 0.02562 * 9 8 7 11 11 C 1.48835 * 119.99848 * 180.02562 * 9 8 7 12 12 O 1.21507 * 120.00083 * 0.02562 * 11 9 8 13 13 N 1.34777 * 120.00389 * 179.97438 * 11 9 8 14 14 C 1.36110 * 120.00258 * 179.97438 * 13 11 9 15 15 H 1.08001 * 120.00473 * 0.02562 * 14 13 11 16 16 C 1.39589 * 120.00118 * 180.02562 * 14 13 11 17 17 N 1.31017 * 119.99787 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00281 * 179.97438 * 16 14 13 19 19 H 1.48506 * 109.46739 * 59.99952 * 18 16 14 20 20 H 1.48498 * 109.47214 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.46964 * 300.00366 * 18 16 14 22 22 C 1.34957 * 107.92650 * 0.02562 * 5 4 3 23 23 H 1.09000 * 109.47551 * 90.02427 * 1 2 3 24 24 H 1.09002 * 109.46861 * 210.02340 * 1 2 3 25 25 H 1.09005 * 109.47196 * 330.02268 * 1 2 3 26 26 H 1.07995 * 125.89923 * 0.21784 * 3 2 1 27 27 H 1.09000 * 109.47058 * 65.02749 * 6 5 4 28 28 H 1.09005 * 109.47365 * 185.02206 * 6 5 4 29 29 H 1.09000 * 109.47373 * 300.00147 * 7 6 5 30 30 H 1.09005 * 109.47107 * 59.99639 * 7 6 5 31 31 H 0.97005 * 119.99858 * 0.02562 * 8 7 6 32 32 H 0.96998 * 119.99357 * 0.02562 * 13 11 9 33 33 H 0.96997 * 119.99861 * 179.97438 * 17 16 14 34 34 H 1.07995 * 126.12756 * 180.02562 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3299 1.1310 0.0000 4 7 3.5754 0.7302 0.0006 5 7 3.5844 -0.6706 0.0003 6 6 4.7745 -1.5248 0.0003 7 6 5.6716 -1.1495 -1.1809 8 7 6.8621 -2.0034 -1.1807 9 6 7.8005 -1.8515 -2.1361 10 8 7.6595 -1.0067 -2.9968 11 6 9.0096 -2.7194 -2.1361 12 8 9.1505 -3.5651 -1.2751 13 7 9.9478 -2.5680 -3.0918 14 6 11.0538 -3.3613 -3.0915 15 1 11.1795 -4.1125 -2.3258 16 6 12.0258 -3.2041 -4.0810 17 7 11.8736 -2.2926 -5.0097 18 14 13.5440 -4.2924 -4.0803 19 1 13.1338 -5.7144 -4.2031 20 1 14.4153 -3.9273 -5.2261 21 1 14.2901 -4.1003 -2.8108 22 6 2.3031 -1.0942 -0.0009 23 1 -0.3634 -0.0004 -1.0276 24 1 -0.3633 -0.8898 0.5142 25 1 -0.3634 0.8902 0.5135 26 1 1.9950 2.1577 0.0033 27 1 5.3226 -1.3844 0.9319 28 1 4.4727 -2.5684 -0.0899 29 1 5.1235 -1.2900 -2.1125 30 1 5.9734 -0.1060 -1.0907 31 1 6.9749 -2.6781 -0.4928 32 1 9.8351 -1.8931 -3.7793 33 1 12.5492 -2.1831 -5.6971 34 1 1.9724 -2.1223 -0.0010 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000235802430.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:14:25 Heat of formation + Delta-G solvation = 2.574913 kcal Electronic energy + Delta-G solvation = -18837.310158 eV Core-core repulsion = 15579.063359 eV Total energy + Delta-G solvation = -3258.246799 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.38219 -39.54421 -37.34574 -35.63913 -34.32096 -33.18360 -31.76149 -31.43395 -29.33446 -26.50998 -25.70170 -24.02570 -22.22383 -21.04438 -20.37167 -19.52851 -18.38847 -17.12527 -17.01019 -15.96519 -15.70477 -15.17037 -14.86955 -14.47290 -14.31380 -14.07324 -13.91933 -13.51867 -13.19009 -13.13049 -12.78836 -12.58086 -12.18336 -12.10348 -11.80224 -11.68548 -11.20221 -10.67948 -10.62257 -10.49975 -10.40105 -9.74759 -9.62047 -8.90099 -8.53430 -8.33543 -8.27105 -6.71092 -4.03495 1.70426 2.19413 2.38034 2.62311 3.13427 3.14882 3.16401 3.39576 4.02373 4.21922 4.26372 4.58179 4.61018 4.81549 4.96396 4.99781 5.06411 5.14552 5.23520 5.48730 5.53792 5.68228 5.75670 5.85095 5.94082 6.01122 6.46739 6.60113 6.81896 7.26908 7.52852 7.58856 7.78512 8.26423 8.54357 8.91033 9.26639 9.79914 10.43533 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.064894 B = 0.002882 C = 0.002815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 431.370535 B = 9711.770336 C = 9945.583343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.246 4.246 3 C 0.047 3.953 4 N -0.288 5.288 5 N -0.368 5.368 6 C 0.125 3.875 7 C 0.112 3.888 8 N -0.716 5.716 9 C 0.516 3.484 10 O -0.542 6.542 11 C 0.393 3.607 12 O -0.599 6.599 13 N -0.496 5.496 14 C -0.307 4.307 15 H 0.113 0.887 16 C 0.031 3.969 17 N -0.867 5.867 18 Si 0.941 3.059 19 H -0.268 1.268 20 H -0.280 1.280 21 H -0.268 1.268 22 C 0.055 3.945 23 H 0.060 0.940 24 H 0.058 0.942 25 H 0.062 0.938 26 H 0.182 0.818 27 H 0.094 0.906 28 H 0.104 0.896 29 H 0.071 0.929 30 H 0.082 0.918 31 H 0.411 0.589 32 H 0.405 0.595 33 H 0.282 0.718 34 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.036 2.183 8.439 20.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.258 4.258 3 C -0.139 4.139 4 N -0.109 5.109 5 N -0.151 5.151 6 C 0.003 3.997 7 C -0.013 4.013 8 N -0.372 5.372 9 C 0.300 3.700 10 O -0.418 6.418 11 C 0.177 3.823 12 O -0.488 6.488 13 N -0.130 5.130 14 C -0.437 4.437 15 H 0.131 0.869 16 C -0.176 4.176 17 N -0.505 5.505 18 Si 0.766 3.234 19 H -0.193 1.193 20 H -0.206 1.206 21 H -0.193 1.193 22 C -0.090 4.090 23 H 0.078 0.922 24 H 0.077 0.923 25 H 0.081 0.919 26 H 0.199 0.801 27 H 0.112 0.888 28 H 0.123 0.877 29 H 0.089 0.911 30 H 0.100 0.900 31 H 0.246 0.754 32 H 0.240 0.760 33 H 0.092 0.908 34 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -16.566 2.593 8.184 18.659 hybrid contribution -0.172 -0.622 -0.171 0.667 sum -16.738 1.971 8.013 18.662 Atomic orbital electron populations 1.20035 0.89324 1.02014 1.01519 1.20154 0.97122 0.91905 1.16579 1.23836 0.89953 0.99862 1.00255 1.77419 1.21244 0.88648 1.23575 1.48409 1.05135 1.04775 1.56757 1.21834 0.84360 0.93023 1.00501 1.21429 0.86025 0.96439 0.97435 1.45462 1.20708 1.39229 1.31799 1.20712 0.84424 0.83996 0.80836 1.90708 1.78385 1.35529 1.37151 1.18851 0.86127 0.89722 0.87577 1.90578 1.79403 1.38865 1.39947 1.41560 1.16635 1.31168 1.23638 1.19848 0.96146 1.15259 1.12467 0.86935 1.25616 0.99987 0.97167 0.94829 1.69477 1.36051 1.31327 1.13621 0.85758 0.79612 0.79795 0.78213 1.19329 1.20553 1.19324 1.22374 0.83997 1.00155 1.02505 0.92159 0.92256 0.91946 0.80116 0.88752 0.87738 0.91064 0.89996 0.75360 0.75954 0.90765 0.80971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.46 10.37 36.01 0.37 -0.09 16 2 C -0.25 -2.33 6.10 -105.05 -0.64 -2.97 16 3 C 0.05 0.51 11.96 -17.36 -0.21 0.30 16 4 N -0.29 -3.83 12.42 30.62 0.38 -3.45 16 5 N -0.37 -4.20 3.68 -61.37 -0.23 -4.43 16 6 C 0.12 1.25 6.62 -4.05 -0.03 1.23 16 7 C 0.11 1.55 5.86 -4.04 -0.02 1.53 16 8 N -0.72 -11.74 5.55 -60.93 -0.34 -12.07 16 9 C 0.52 11.14 7.87 -11.88 -0.09 11.04 16 10 O -0.54 -12.87 16.47 5.43 0.09 -12.78 16 11 C 0.39 9.79 7.82 -11.87 -0.09 9.70 16 12 O -0.60 -15.73 16.03 5.36 0.09 -15.64 16 13 N -0.50 -13.22 5.25 -11.59 -0.06 -13.28 16 14 C -0.31 -8.39 9.67 -15.15 -0.15 -8.53 16 15 H 0.11 3.12 7.15 -52.49 -0.38 2.75 16 16 C 0.03 0.81 5.51 -17.40 -0.10 0.71 16 17 N -0.87 -23.15 13.03 55.53 0.72 -22.43 16 18 Si 0.94 19.91 29.56 -169.99 -5.02 14.88 16 19 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 20 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 21 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 22 C 0.06 0.52 11.36 -17.22 -0.20 0.33 16 23 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 24 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 25 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.18 1.41 8.06 -52.49 -0.42 0.99 16 27 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 28 H 0.10 0.76 8.07 -51.93 -0.42 0.34 16 29 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 30 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 31 H 0.41 5.99 7.93 -40.82 -0.32 5.66 16 32 H 0.41 10.91 7.35 -40.82 -0.30 10.61 16 33 H 0.28 6.98 8.30 -40.82 -0.34 6.64 16 34 H 0.17 1.04 8.06 -52.49 -0.42 0.62 16 LS Contribution 310.20 15.07 4.67 4.67 Total: -1.00 -32.94 310.20 -4.78 -37.72 By element: Atomic # 1 Polarization: 17.50 SS G_CDS: -3.93 Total: 13.56 kcal Atomic # 6 Polarization: 14.40 SS G_CDS: -1.15 Total: 13.25 kcal Atomic # 7 Polarization: -56.14 SS G_CDS: 0.48 Total: -55.66 kcal Atomic # 8 Polarization: -28.60 SS G_CDS: 0.18 Total: -28.42 kcal Atomic # 14 Polarization: 19.91 SS G_CDS: -5.02 Total: 14.88 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -32.94 -4.78 -37.72 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235802430.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.290 kcal (2) G-P(sol) polarization free energy of solvation -32.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.715 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds