Wall clock time and date at job start Mon Mar 30 2020 05:14:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.39868 * 126.03767 * 2 1 4 4 N 1.30844 * 108.19764 * 179.97438 * 3 2 1 5 5 N 1.40078 * 108.20890 * 0.02562 * 4 3 2 6 6 C 1.46495 * 126.04021 * 179.97438 * 5 4 3 7 7 C 1.52997 * 109.47240 * 305.02409 * 6 5 4 8 8 N 1.46501 * 109.47523 * 179.97438 * 7 6 5 9 9 C 1.34773 * 120.00006 * 180.02562 * 8 7 6 10 10 O 1.21430 * 120.00428 * 0.02562 * 9 8 7 11 11 C 1.48835 * 119.99848 * 180.02562 * 9 8 7 12 12 O 1.21507 * 120.00083 * 0.02562 * 11 9 8 13 13 N 1.34777 * 120.00389 * 179.97438 * 11 9 8 14 14 C 1.36110 * 120.00258 * 179.97438 * 13 11 9 15 15 H 1.08001 * 120.00473 * 0.02562 * 14 13 11 16 16 C 1.39589 * 120.00118 * 180.02562 * 14 13 11 17 17 N 1.31017 * 119.99787 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00281 * 179.97438 * 16 14 13 19 19 H 1.48506 * 109.46739 * 59.99952 * 18 16 14 20 20 H 1.48498 * 109.47214 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.46964 * 300.00366 * 18 16 14 22 22 C 1.34957 * 107.92650 * 0.02562 * 5 4 3 23 23 H 1.09000 * 109.47551 * 90.02427 * 1 2 3 24 24 H 1.09002 * 109.46861 * 210.02340 * 1 2 3 25 25 H 1.09005 * 109.47196 * 330.02268 * 1 2 3 26 26 H 1.07995 * 125.89923 * 0.21784 * 3 2 1 27 27 H 1.09000 * 109.47058 * 65.02749 * 6 5 4 28 28 H 1.09005 * 109.47365 * 185.02206 * 6 5 4 29 29 H 1.09000 * 109.47373 * 300.00147 * 7 6 5 30 30 H 1.09005 * 109.47107 * 59.99639 * 7 6 5 31 31 H 0.97005 * 119.99858 * 0.02562 * 8 7 6 32 32 H 0.96998 * 119.99357 * 0.02562 * 13 11 9 33 33 H 0.96997 * 119.99861 * 179.97438 * 17 16 14 34 34 H 1.07995 * 126.12756 * 180.02562 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3299 1.1310 0.0000 4 7 3.5754 0.7302 0.0006 5 7 3.5844 -0.6706 0.0003 6 6 4.7745 -1.5248 0.0003 7 6 5.6716 -1.1495 -1.1809 8 7 6.8621 -2.0034 -1.1807 9 6 7.8005 -1.8515 -2.1361 10 8 7.6595 -1.0067 -2.9968 11 6 9.0096 -2.7194 -2.1361 12 8 9.1505 -3.5651 -1.2751 13 7 9.9478 -2.5680 -3.0918 14 6 11.0538 -3.3613 -3.0915 15 1 11.1795 -4.1125 -2.3258 16 6 12.0258 -3.2041 -4.0810 17 7 11.8736 -2.2926 -5.0097 18 14 13.5440 -4.2924 -4.0803 19 1 13.1338 -5.7144 -4.2031 20 1 14.4153 -3.9273 -5.2261 21 1 14.2901 -4.1003 -2.8108 22 6 2.3031 -1.0942 -0.0009 23 1 -0.3634 -0.0004 -1.0276 24 1 -0.3633 -0.8898 0.5142 25 1 -0.3634 0.8902 0.5135 26 1 1.9950 2.1577 0.0033 27 1 5.3226 -1.3844 0.9319 28 1 4.4727 -2.5684 -0.0899 29 1 5.1235 -1.2900 -2.1125 30 1 5.9734 -0.1060 -1.0907 31 1 6.9749 -2.6781 -0.4928 32 1 9.8351 -1.8931 -3.7793 33 1 12.5492 -2.1831 -5.6971 34 1 1.9724 -2.1223 -0.0010 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000235802430.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:14:24 Heat of formation + Delta-G solvation = -22.832251 kcal Electronic energy + Delta-G solvation = -18838.411895 eV Core-core repulsion = 15579.063359 eV Total energy + Delta-G solvation = -3259.348536 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.15203 -41.33048 -39.23218 -37.02548 -36.20180 -34.30612 -33.45557 -32.48291 -30.37846 -27.99398 -26.93030 -25.28498 -23.74313 -21.94303 -21.24502 -21.06807 -20.38529 -18.85839 -18.07145 -17.38941 -17.10603 -16.72486 -16.43215 -15.83943 -15.75947 -15.42267 -15.12662 -14.69817 -14.46611 -14.11019 -13.85267 -13.70934 -13.67521 -13.05237 -12.97077 -12.75418 -12.63734 -12.60796 -12.37320 -12.12701 -11.66656 -11.44246 -10.46304 -10.38486 -10.30124 -10.29436 -9.24508 -8.67756 -6.12839 0.54173 0.93272 1.28723 1.42673 1.48728 1.55251 1.88928 1.95094 2.29370 2.33226 3.13354 3.23420 3.40606 3.70878 3.95184 3.99061 4.07791 4.17827 4.45091 4.53425 4.62567 4.73063 4.95246 5.03886 5.11399 5.23534 5.28523 5.34266 5.64673 5.76815 6.07439 6.12487 6.33658 6.75328 6.77049 6.95966 7.24399 7.76296 8.47812 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.064894 B = 0.002882 C = 0.002815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 431.370535 B = 9711.770336 C = 9945.583343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C -0.256 4.256 3 C 0.040 3.960 4 N -0.340 5.340 5 N -0.380 5.380 6 C 0.132 3.868 7 C 0.117 3.883 8 N -0.689 5.689 9 C 0.521 3.479 10 O -0.567 6.567 11 C 0.391 3.609 12 O -0.614 6.614 13 N -0.510 5.510 14 C -0.345 4.345 15 H 0.102 0.898 16 C -0.006 4.006 17 N -0.896 5.896 18 Si 1.012 2.988 19 H -0.262 1.262 20 H -0.268 1.268 21 H -0.263 1.263 22 C 0.056 3.944 23 H 0.063 0.937 24 H 0.072 0.928 25 H 0.069 0.931 26 H 0.200 0.800 27 H 0.104 0.896 28 H 0.141 0.859 29 H 0.065 0.935 30 H 0.061 0.939 31 H 0.422 0.578 32 H 0.400 0.600 33 H 0.289 0.711 34 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.123 1.106 9.209 21.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.267 4.267 3 C -0.146 4.146 4 N -0.161 5.161 5 N -0.163 5.163 6 C 0.010 3.990 7 C -0.007 4.007 8 N -0.344 5.344 9 C 0.304 3.696 10 O -0.446 6.446 11 C 0.176 3.824 12 O -0.503 6.503 13 N -0.143 5.143 14 C -0.475 4.475 15 H 0.120 0.880 16 C -0.210 4.210 17 N -0.534 5.534 18 Si 0.832 3.168 19 H -0.187 1.187 20 H -0.192 1.192 21 H -0.188 1.188 22 C -0.089 4.089 23 H 0.082 0.918 24 H 0.091 0.909 25 H 0.088 0.912 26 H 0.217 0.783 27 H 0.122 0.878 28 H 0.159 0.841 29 H 0.083 0.917 30 H 0.079 0.921 31 H 0.261 0.739 32 H 0.235 0.765 33 H 0.100 0.900 34 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -17.697 1.515 8.990 19.907 hybrid contribution 0.015 -0.234 -0.356 0.427 sum -17.681 1.281 8.634 19.718 Atomic orbital electron populations 1.20079 0.87310 1.03113 1.02049 1.20582 0.98581 0.91464 1.16120 1.24320 0.89698 1.01360 0.99213 1.77360 1.22835 0.90132 1.25799 1.48490 1.06011 1.04320 1.57475 1.21854 0.83826 0.94601 0.98679 1.21481 0.85188 0.94757 0.99302 1.45286 1.20092 1.38909 1.30104 1.20131 0.84393 0.83334 0.81771 1.90702 1.78883 1.36452 1.38530 1.19446 0.86706 0.89581 0.86677 1.90547 1.80021 1.39525 1.40238 1.41666 1.17245 1.31344 1.24092 1.19979 0.97557 1.16347 1.13611 0.88018 1.26590 1.02536 0.98178 0.93707 1.69550 1.37287 1.32411 1.14108 0.84729 0.75529 0.77886 0.78648 1.18662 1.19231 1.18788 1.23022 0.83072 1.01820 1.01026 0.91824 0.90886 0.91188 0.78330 0.87826 0.84124 0.91698 0.92099 0.73943 0.76531 0.90048 0.77539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.71 10.37 71.24 0.74 0.03 16 2 C -0.26 -4.33 6.10 -20.14 -0.12 -4.46 16 3 C 0.04 0.82 11.96 85.23 1.02 1.84 16 4 N -0.34 -8.89 12.42 -57.02 -0.71 -9.60 16 5 N -0.38 -8.03 3.68 -348.07 -1.28 -9.31 16 6 C 0.13 2.36 6.62 86.38 0.57 2.93 16 7 C 0.12 3.15 5.86 86.38 0.51 3.65 16 8 N -0.69 -21.91 5.55 -465.01 -2.58 -24.49 16 9 C 0.52 22.56 7.87 87.08 0.69 23.25 16 10 O -0.57 -27.36 16.47 -3.50 -0.06 -27.41 16 11 C 0.39 19.76 7.82 87.08 0.68 20.44 16 12 O -0.61 -32.33 16.03 -3.74 -0.06 -32.39 16 13 N -0.51 -27.88 5.25 -308.87 -1.62 -29.50 16 14 C -0.35 -19.25 9.67 84.36 0.82 -18.44 16 15 H 0.10 5.76 7.15 -2.91 -0.02 5.74 16 16 C -0.01 -0.30 5.51 85.14 0.47 0.17 16 17 N -0.90 -48.21 13.03 21.77 0.28 -47.92 16 18 Si 1.01 40.36 29.56 68.60 2.03 42.39 16 19 H -0.26 -10.14 7.11 99.48 0.71 -9.44 16 20 H -0.27 -10.07 7.11 99.48 0.71 -9.36 16 21 H -0.26 -10.24 7.11 99.48 0.71 -9.53 16 22 C 0.06 0.90 11.36 83.54 0.95 1.85 16 23 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 24 H 0.07 0.57 8.14 -2.39 -0.02 0.56 16 25 H 0.07 0.63 8.14 -2.38 -0.02 0.61 16 26 H 0.20 2.95 8.06 -2.91 -0.02 2.93 16 27 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 28 H 0.14 1.49 8.07 -2.38 -0.02 1.47 16 29 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 30 H 0.06 1.94 8.14 -2.38 -0.02 1.92 16 31 H 0.42 11.58 7.93 -92.70 -0.74 10.84 16 32 H 0.40 22.29 7.35 -92.71 -0.68 21.61 16 33 H 0.29 14.28 8.30 -92.71 -0.77 13.51 16 34 H 0.21 1.66 8.06 -2.91 -0.02 1.64 16 Total: -1.00 -72.39 310.20 2.05 -70.34 By element: Atomic # 1 Polarization: 36.90 SS G_CDS: -0.27 Total: 36.63 kcal Atomic # 6 Polarization: 24.95 SS G_CDS: 6.31 Total: 31.27 kcal Atomic # 7 Polarization: -114.92 SS G_CDS: -5.90 Total: -120.83 kcal Atomic # 8 Polarization: -59.68 SS G_CDS: -0.12 Total: -59.80 kcal Atomic # 14 Polarization: 40.36 SS G_CDS: 2.03 Total: 42.39 kcal Total: -72.39 2.05 -70.34 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235802430.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.512 kcal (2) G-P(sol) polarization free energy of solvation -72.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds