Wall clock time and date at job start Mon Mar 30 2020 05:01:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86799 * 119.99702 * 2 1 4 4 H 1.48503 * 109.47349 * 239.99745 * 3 2 1 5 5 H 1.48498 * 109.47169 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47016 * 119.99859 * 3 2 1 7 7 C 1.38812 * 120.00465 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00113 * 180.02562 * 7 2 1 9 9 N 1.36942 * 119.99642 * 359.97438 * 7 2 1 10 10 C 1.46499 * 119.99666 * 180.02562 * 9 7 2 11 11 H 1.09001 * 109.50569 * 35.08287 * 10 9 7 12 12 C 1.53115 * 109.50183 * 274.99981 * 10 9 7 13 13 C 1.53119 * 109.16259 * 182.36888 * 12 10 9 14 14 C 1.53040 * 109.28018 * 57.65125 * 13 12 10 15 15 N 1.46855 * 109.52341 * 300.82636 * 14 13 12 16 16 C 1.46899 * 110.99979 * 185.83648 * 15 14 13 17 17 C 1.50697 * 109.47260 * 66.04408 * 16 15 14 18 18 C 1.33385 * 125.20045 * 89.99849 * 17 16 15 19 19 C 1.38424 * 114.92103 * 180.02562 * 18 17 16 20 20 C 1.33394 * 114.92041 * 359.97438 * 19 18 17 21 21 S 1.75884 * 125.20291 * 270.04275 * 17 16 15 22 22 C 1.46850 * 111.19494 * 61.74053 * 15 14 13 23 23 H 0.96997 * 120.00294 * 359.97438 * 1 2 3 24 24 H 0.97005 * 119.99726 * 0.02562 * 9 7 2 25 25 H 1.08993 * 109.52457 * 62.46388 * 12 10 9 26 26 H 1.09004 * 109.57652 * 302.29793 * 12 10 9 27 27 H 1.09003 * 109.50327 * 297.71661 * 13 12 10 28 28 H 1.08995 * 109.53942 * 177.61462 * 13 12 10 29 29 H 1.08997 * 109.46767 * 180.80736 * 14 13 12 30 30 H 1.09000 * 109.45367 * 60.83239 * 14 13 12 31 31 H 1.09007 * 109.46942 * 306.04708 * 16 15 14 32 32 H 1.08996 * 109.47356 * 186.05151 * 16 15 14 33 33 H 1.07998 * 122.54483 * 0.05998 * 18 17 16 34 34 H 1.08001 * 122.54383 * 180.02562 * 19 18 17 35 35 H 1.07995 * 125.20296 * 179.73420 * 20 19 18 36 36 H 1.08994 * 109.46577 * 58.27491 * 22 15 14 37 37 H 1.09006 * 109.45779 * 178.24255 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2851 2.7464 0.0006 6 1 3.1038 1.6965 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 7 1.3257 -2.3881 -0.0005 10 6 2.0583 -3.6567 -0.0005 11 1 2.9684 -3.5515 0.5900 12 6 2.4228 -4.0365 -1.4384 13 6 3.1357 -5.3916 -1.4349 14 6 2.2267 -6.4391 -0.7879 15 7 1.9073 -6.0303 0.5860 16 6 1.1505 -7.0778 1.2845 17 6 2.0239 -8.2924 1.4657 18 6 2.8134 -8.5220 2.5160 19 6 3.5252 -9.7080 2.4624 20 6 3.3133 -10.4418 1.3689 21 16 2.1588 -9.6237 0.3242 22 6 1.1804 -4.7544 0.6049 23 1 -0.4850 0.8400 0.0004 24 1 0.3556 -2.3880 -0.0005 25 1 3.0834 -3.2785 -1.8590 26 1 1.5160 -4.1036 -2.0395 27 1 4.0628 -5.3137 -0.8670 28 1 3.3604 -5.6879 -2.4595 29 1 2.7370 -7.4021 -0.7709 30 1 1.3057 -6.5263 -1.3642 31 1 0.2730 -7.3458 0.6959 32 1 0.8346 -6.7085 2.2601 33 1 2.8911 -7.8349 3.3456 34 1 4.2004 -10.0162 3.2470 35 1 3.7830 -11.3905 1.1551 36 1 0.2643 -4.8497 0.0221 37 1 0.9309 -4.4939 1.6335 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258523198.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:01:51 Heat of formation + Delta-G solvation = 28.118619 kcal Electronic energy + Delta-G solvation = -17870.531488 eV Core-core repulsion = 15159.685562 eV Total energy + Delta-G solvation = -2710.845926 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.24446 -38.56705 -36.46704 -34.40662 -32.85388 -31.17286 -29.65679 -27.09333 -25.84376 -24.43130 -23.60405 -22.59165 -20.79569 -19.92813 -19.16184 -18.03844 -17.18346 -16.47942 -16.43381 -15.82374 -15.51964 -15.36863 -14.87609 -14.60052 -14.54129 -13.91016 -13.58416 -13.55740 -13.28219 -13.12882 -12.86865 -12.78901 -12.43881 -12.26167 -12.10965 -11.99401 -11.76765 -11.60770 -11.50936 -11.27528 -10.86063 -9.63478 -9.36445 -9.23968 -9.00876 -7.93733 -5.22650 0.10358 0.74804 1.13365 1.47710 1.50719 1.56714 1.88945 2.55317 2.96283 3.39343 3.74283 3.91576 3.97180 4.11866 4.22147 4.24820 4.32132 4.40775 4.46172 4.61652 4.64343 4.75252 4.78377 4.81221 4.85408 4.99776 5.12302 5.15937 5.28837 5.43476 5.45155 5.50595 5.57315 5.64247 6.03562 6.09264 6.29385 7.34142 8.08663 8.33016 9.29668 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.042484 B = 0.003810 C = 0.003745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 658.911511 B = 7348.100958 C = 7475.797241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.074 4.074 3 Si 0.972 3.028 4 H -0.279 1.279 5 H -0.295 1.295 6 H -0.278 1.278 7 C -0.239 4.239 8 H 0.073 0.927 9 N -0.737 5.737 10 C 0.180 3.820 11 H 0.042 0.958 12 C -0.128 4.128 13 C -0.105 4.105 14 C 0.054 3.946 15 N -0.532 5.532 16 C 0.125 3.875 17 C -0.180 4.180 18 C -0.128 4.128 19 C -0.142 4.142 20 C -0.211 4.211 21 S 0.081 5.919 22 C 0.068 3.932 23 H 0.251 0.749 24 H 0.372 0.628 25 H 0.043 0.957 26 H 0.042 0.958 27 H 0.065 0.935 28 H 0.081 0.919 29 H 0.088 0.912 30 H 0.029 0.971 31 H 0.045 0.955 32 H 0.097 0.903 33 H 0.144 0.856 34 H 0.160 0.840 35 H 0.186 0.814 36 H 0.027 0.973 37 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.890 -22.655 2.004 23.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.266 4.266 3 Si 0.801 3.199 4 H -0.205 1.205 5 H -0.221 1.221 6 H -0.204 1.204 7 C -0.370 4.370 8 H 0.091 0.909 9 N -0.376 5.376 10 C 0.071 3.929 11 H 0.061 0.939 12 C -0.169 4.169 13 C -0.143 4.143 14 C -0.074 4.074 15 N -0.257 5.257 16 C -0.004 4.004 17 C -0.297 4.297 18 C -0.159 4.159 19 C -0.173 4.173 20 C -0.346 4.346 21 S 0.343 5.657 22 C -0.060 4.060 23 H 0.060 0.940 24 H 0.203 0.797 25 H 0.062 0.938 26 H 0.061 0.939 27 H 0.084 0.916 28 H 0.100 0.900 29 H 0.106 0.894 30 H 0.048 0.952 31 H 0.064 0.936 32 H 0.116 0.884 33 H 0.162 0.838 34 H 0.177 0.823 35 H 0.203 0.797 36 H 0.045 0.955 37 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 5.821 -22.805 0.868 23.553 hybrid contribution -0.311 1.458 0.845 1.714 sum 5.510 -21.347 1.713 22.113 Atomic orbital electron populations 1.69807 1.06578 1.26096 1.59629 1.25532 0.96360 1.00971 1.03784 0.85232 0.77220 0.79259 0.78188 1.20475 1.22138 1.20379 1.19547 0.91328 0.85138 1.41022 0.90877 1.42541 1.05384 1.00913 1.88802 1.20297 0.94041 0.84413 0.94100 0.93943 1.22132 0.99367 0.96760 0.98609 1.21506 0.98500 0.93471 1.00825 1.22240 0.98460 0.99095 0.87575 1.61892 1.45105 1.01920 1.16794 1.20528 0.92250 0.87471 1.00184 1.24331 1.06101 1.00048 0.99234 1.20372 0.97257 0.98591 0.99705 1.20433 1.02383 0.94618 0.99819 1.25943 1.04565 1.05692 0.98446 1.84286 1.43333 1.13914 1.24136 1.22105 0.94507 0.88872 1.00539 0.94034 0.79672 0.93775 0.93891 0.91584 0.90036 0.89424 0.95246 0.93640 0.88448 0.83831 0.82269 0.79657 0.95490 0.91094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.92 13.06 21.65 0.28 -59.64 16 2 C -0.07 -4.32 5.50 84.86 0.47 -3.85 16 3 Si 0.97 46.64 29.55 68.60 2.03 48.66 16 4 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 5 H -0.30 -14.23 7.11 99.48 0.71 -13.52 16 6 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 7 C -0.24 -13.49 9.93 84.03 0.83 -12.65 16 8 H 0.07 4.00 7.83 -2.91 -0.02 3.98 16 9 N -0.74 -38.05 5.13 -322.70 -1.65 -39.70 16 10 C 0.18 7.44 2.93 45.04 0.13 7.58 16 11 H 0.04 1.86 8.08 -2.39 -0.02 1.84 16 12 C -0.13 -4.76 5.58 30.67 0.17 -4.59 16 13 C -0.10 -3.01 6.09 30.65 0.19 -2.82 16 14 C 0.05 1.46 5.29 86.33 0.46 1.92 16 15 N -0.53 -15.41 4.65 -900.90 -4.19 -19.59 16 16 C 0.12 3.03 5.46 85.56 0.47 3.50 16 17 C -0.18 -3.98 5.26 24.59 0.13 -3.85 16 18 C -0.13 -2.62 10.05 21.22 0.21 -2.41 16 19 C -0.14 -2.41 10.18 21.22 0.22 -2.19 16 20 C -0.21 -3.36 11.23 66.72 0.75 -2.61 16 21 S 0.08 1.54 21.74 -56.49 -1.23 0.31 16 22 C 0.07 2.37 4.93 86.33 0.43 2.80 16 23 H 0.25 15.05 8.31 -92.71 -0.77 14.28 16 24 H 0.37 20.48 7.80 -92.70 -0.72 19.76 16 25 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 26 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 27 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 28 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 29 H 0.09 2.13 5.71 -2.39 -0.01 2.12 16 30 H 0.03 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.05 1.07 8.12 -2.38 -0.02 1.06 16 32 H 0.10 2.25 7.98 -2.39 -0.02 2.23 16 33 H 0.14 2.77 8.06 -2.91 -0.02 2.74 16 34 H 0.16 1.93 8.06 -2.91 -0.02 1.90 16 35 H 0.19 1.92 8.06 -2.91 -0.02 1.89 16 36 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 37 H 0.07 2.51 8.01 -2.38 -0.02 2.49 16 Total: -1.00 -63.74 312.75 0.02 -63.73 By element: Atomic # 1 Polarization: 25.09 SS G_CDS: 0.33 Total: 25.42 kcal Atomic # 6 Polarization: -23.63 SS G_CDS: 4.45 Total: -19.18 kcal Atomic # 7 Polarization: -113.38 SS G_CDS: -5.56 Total: -118.93 kcal Atomic # 14 Polarization: 46.64 SS G_CDS: 2.03 Total: 48.66 kcal Atomic # 16 Polarization: 1.54 SS G_CDS: -1.23 Total: 0.31 kcal Total: -63.74 0.02 -63.73 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258523198.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.846 kcal (2) G-P(sol) polarization free energy of solvation -63.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.727 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds