Wall clock time and date at job start Mon Mar 30 2020 05:01:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86800 * 120.00275 * 2 1 4 4 H 1.48504 * 109.47069 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47059 * 300.00226 * 3 2 1 6 6 H 1.48495 * 109.47177 * 60.00024 * 3 2 1 7 7 C 1.38821 * 119.99951 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00067 * 179.97438 * 7 2 1 9 9 N 1.36930 * 119.99649 * 359.97438 * 7 2 1 10 10 C 1.46500 * 119.99822 * 180.02562 * 9 7 2 11 11 H 1.09002 * 109.53482 * 325.09594 * 10 9 7 12 12 C 1.53119 * 109.50623 * 85.19702 * 10 9 7 13 13 C 1.53116 * 109.16456 * 177.59581 * 12 10 9 14 14 C 1.53039 * 109.27732 * 302.34716 * 13 12 10 15 15 N 1.46845 * 109.52624 * 59.17590 * 14 13 12 16 16 C 1.46899 * 111.00058 * 174.16150 * 15 14 13 17 17 C 1.50697 * 109.46935 * 294.20997 * 16 15 14 18 18 C 1.33387 * 125.20287 * 90.00248 * 17 16 15 19 19 C 1.38427 * 114.91991 * 179.75128 * 18 17 16 20 20 C 1.33381 * 114.92374 * 0.25034 * 19 18 17 21 21 S 1.75886 * 125.20508 * 270.13702 * 17 16 15 22 22 C 1.46852 * 111.19784 * 298.26020 * 15 14 13 23 23 H 0.96995 * 119.99644 * 359.97438 * 1 2 3 24 24 H 0.97000 * 120.00471 * 359.97438 * 9 7 2 25 25 H 1.09001 * 109.52395 * 297.50082 * 12 10 9 26 26 H 1.08999 * 109.51954 * 57.68995 * 12 10 9 27 27 H 1.09004 * 109.50407 * 62.28313 * 13 12 10 28 28 H 1.08997 * 109.50949 * 182.36447 * 13 12 10 29 29 H 1.08999 * 109.46271 * 299.15952 * 14 13 12 30 30 H 1.09003 * 109.46364 * 179.19584 * 14 13 12 31 31 H 1.09004 * 109.47176 * 174.21417 * 16 15 14 32 32 H 1.08991 * 109.47066 * 54.21364 * 16 15 14 33 33 H 1.08002 * 122.54190 * 0.02679 * 18 17 16 34 34 H 1.08001 * 122.53885 * 180.22673 * 19 18 17 35 35 H 1.07994 * 125.20771 * 180.02562 * 20 19 18 36 36 H 1.08994 * 109.45869 * 181.75583 * 22 15 14 37 37 H 1.08997 * 109.45762 * 301.73438 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3462 -0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8916 2.3964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2023 -0.0010 9 7 1.3255 -2.3880 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 1 2.9699 -3.5512 -0.5884 12 6 2.4183 -4.0392 1.4377 13 6 3.1302 -5.3947 1.4341 14 6 2.2223 -6.4405 0.7828 15 7 1.9070 -6.0294 -0.5912 16 6 1.1514 -7.0752 -1.2934 17 6 2.0224 -8.2924 -1.4686 18 6 2.1161 -9.3021 -0.6019 19 6 2.9788 -10.3167 -0.9795 20 6 3.5896 -10.1285 -2.1502 21 16 3.0735 -8.5975 -2.8454 22 6 1.1811 -4.7529 -0.6102 23 1 -0.4849 0.8400 0.0004 24 1 0.3555 -2.3880 0.0002 25 1 3.0783 -3.2822 1.8614 26 1 1.5092 -4.1067 2.0352 27 1 4.0589 -5.3166 0.8689 28 1 3.3519 -5.6922 2.4590 29 1 1.2996 -6.5282 1.3564 30 1 2.7320 -7.4039 0.7658 31 1 0.8425 -6.7058 -2.2713 32 1 0.2697 -7.3402 -0.7100 33 1 1.5577 -9.3282 0.3222 34 1 3.1451 -11.1940 -0.3719 35 1 4.2931 -10.8119 -2.6024 36 1 0.9347 -4.4907 -1.6390 37 1 0.2634 -4.8485 -0.0299 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258523202.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:01:55 Heat of formation + Delta-G solvation = 46.141860 kcal Electronic energy + Delta-G solvation = -17872.209406 eV Core-core repulsion = 15162.145026 eV Total energy + Delta-G solvation = -2710.064380 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.07693 -37.58895 -34.77536 -32.85493 -31.08284 -30.10694 -27.90542 -26.24704 -23.90585 -23.25973 -22.32607 -21.17160 -19.47871 -19.03694 -17.22251 -16.98199 -15.82784 -15.58872 -14.69722 -14.58189 -14.03199 -13.79329 -13.37482 -13.20754 -12.90749 -12.88675 -12.64391 -12.47855 -12.12281 -11.97134 -11.37155 -10.97529 -10.87547 -10.76554 -10.73174 -10.39327 -10.23932 -10.13450 -9.74775 -9.60314 -8.87840 -8.76601 -8.49804 -8.10073 -6.93911 -5.74819 -3.03327 0.92934 1.60513 1.99458 2.64926 3.44965 3.50849 3.52995 4.12168 4.63728 4.73953 4.96516 5.09852 5.24014 5.35577 5.41378 5.49045 5.53715 5.62232 5.69211 5.71305 5.80670 5.94080 6.01399 6.03392 6.19617 6.23897 6.26592 6.40252 6.43178 6.55609 6.63564 6.98553 7.10295 7.27634 7.37522 7.74383 8.44047 9.54932 10.12389 10.47119 11.48146 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.038207 B = 0.003875 C = 0.003776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.678737 B = 7224.112092 C = 7412.640108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.015 4.015 3 Si 0.906 3.094 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.234 4.234 8 H 0.072 0.928 9 N -0.725 5.725 10 C 0.183 3.817 11 H 0.056 0.944 12 C -0.137 4.137 13 C -0.114 4.114 14 C 0.055 3.945 15 N -0.530 5.530 16 C 0.121 3.879 17 C -0.153 4.153 18 C -0.146 4.146 19 C -0.134 4.134 20 C -0.226 4.226 21 S 0.119 5.881 22 C 0.054 3.946 23 H 0.254 0.746 24 H 0.382 0.618 25 H 0.061 0.939 26 H 0.050 0.950 27 H 0.065 0.935 28 H 0.057 0.943 29 H 0.028 0.972 30 H 0.072 0.928 31 H 0.085 0.915 32 H 0.052 0.948 33 H 0.135 0.865 34 H 0.135 0.865 35 H 0.160 0.840 36 H 0.075 0.925 37 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.534 -20.937 -2.055 21.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.211 4.211 3 Si 0.737 3.263 4 H -0.205 1.205 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.365 4.365 8 H 0.089 0.911 9 N -0.365 5.365 10 C 0.073 3.927 11 H 0.074 0.926 12 C -0.177 4.177 13 C -0.152 4.152 14 C -0.072 4.072 15 N -0.255 5.255 16 C -0.008 4.008 17 C -0.271 4.271 18 C -0.177 4.177 19 C -0.165 4.165 20 C -0.362 4.362 21 S 0.383 5.617 22 C -0.074 4.074 23 H 0.064 0.936 24 H 0.215 0.785 25 H 0.080 0.920 26 H 0.069 0.931 27 H 0.084 0.916 28 H 0.076 0.924 29 H 0.047 0.953 30 H 0.090 0.910 31 H 0.103 0.897 32 H 0.070 0.930 33 H 0.153 0.847 34 H 0.153 0.847 35 H 0.178 0.822 36 H 0.093 0.907 37 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 5.445 -19.920 -3.661 20.973 hybrid contribution -0.927 -0.021 1.840 2.060 sum 4.519 -19.942 -1.821 20.528 Atomic orbital electron populations 1.69672 1.05114 1.25480 1.58046 1.24737 0.95509 0.97661 1.03158 0.86125 0.78842 0.84169 0.77139 1.20519 1.21901 1.21941 1.19291 0.91055 0.83956 1.42201 0.91054 1.42383 1.05752 0.99801 1.88612 1.20150 0.94518 0.85165 0.92857 0.92617 1.22308 0.99754 0.95078 1.00579 1.21565 0.98986 0.95565 0.99127 1.22152 0.98379 0.98806 0.87906 1.61891 1.45241 1.02215 1.16134 1.20520 0.92362 0.87981 0.99966 1.24434 1.03796 1.00271 0.98646 1.20112 1.02207 0.94383 1.00967 1.20102 0.98793 1.00555 0.97001 1.25626 1.07810 1.01637 1.01115 1.84373 1.39632 1.15287 1.22422 1.22416 0.95304 0.88369 1.01303 0.93621 0.78453 0.91982 0.93075 0.91587 0.92437 0.95344 0.90967 0.89655 0.93044 0.84697 0.84682 0.82245 0.90665 0.95044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.33 13.06 55.49 0.72 -27.61 16 2 C -0.01 -0.43 5.50 -17.43 -0.10 -0.53 16 3 Si 0.91 22.55 29.55 -169.99 -5.02 17.53 16 4 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 6 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 7 C -0.23 -6.53 9.93 -15.06 -0.15 -6.68 16 8 H 0.07 1.95 7.83 -52.48 -0.41 1.54 16 9 N -0.72 -18.33 5.12 -53.34 -0.27 -18.60 16 10 C 0.18 3.75 2.93 -67.85 -0.20 3.55 16 11 H 0.06 1.21 8.08 -51.93 -0.42 0.79 16 12 C -0.14 -2.53 5.59 -26.61 -0.15 -2.67 16 13 C -0.11 -1.70 6.09 -26.65 -0.16 -1.87 16 14 C 0.06 0.77 5.25 -3.83 -0.02 0.75 16 15 N -0.53 -7.87 4.65 -236.12 -1.10 -8.97 16 16 C 0.12 1.53 5.46 -4.98 -0.03 1.50 16 17 C -0.15 -1.81 5.44 -36.00 -0.20 -2.00 16 18 C -0.15 -1.55 8.46 -41.21 -0.35 -1.90 16 19 C -0.13 -1.29 10.18 -41.21 -0.42 -1.71 16 20 C -0.23 -2.16 11.23 29.04 0.33 -1.84 16 21 S 0.12 1.32 23.33 -107.50 -2.51 -1.19 16 22 C 0.05 0.94 4.93 -3.83 -0.02 0.92 16 23 H 0.25 7.44 8.31 -40.82 -0.34 7.10 16 24 H 0.38 10.22 7.80 -40.82 -0.32 9.90 16 25 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 26 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 27 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 28 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.07 0.93 5.95 -51.93 -0.31 0.62 16 31 H 0.09 1.05 7.99 -51.93 -0.41 0.64 16 32 H 0.05 0.61 8.12 -51.93 -0.42 0.19 16 33 H 0.14 1.29 8.04 -52.49 -0.42 0.87 16 34 H 0.14 1.01 8.06 -52.49 -0.42 0.59 16 35 H 0.16 1.15 8.06 -52.49 -0.42 0.73 16 36 H 0.07 1.33 8.01 -51.93 -0.42 0.91 16 37 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 313.11 15.07 4.72 4.72 Total: -1.00 -29.92 313.11 -10.57 -40.49 By element: Atomic # 1 Polarization: 11.76 SS G_CDS: -5.65 Total: 6.11 kcal Atomic # 6 Polarization: -11.03 SS G_CDS: -1.46 Total: -12.49 kcal Atomic # 7 Polarization: -54.53 SS G_CDS: -0.65 Total: -55.17 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -5.02 Total: 17.53 kcal Atomic # 16 Polarization: 1.32 SS G_CDS: -2.51 Total: -1.19 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -29.92 -10.57 -40.49 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258523202.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.633 kcal (2) G-P(sol) polarization free energy of solvation -29.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.491 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds