Wall clock time and date at job start Mon Mar 30 2020 05:01:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86800 * 120.00275 * 2 1 4 4 H 1.48504 * 109.47069 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47059 * 300.00226 * 3 2 1 6 6 H 1.48495 * 109.47177 * 60.00024 * 3 2 1 7 7 C 1.38821 * 119.99951 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00067 * 179.97438 * 7 2 1 9 9 N 1.36930 * 119.99649 * 359.97438 * 7 2 1 10 10 C 1.46500 * 119.99822 * 180.02562 * 9 7 2 11 11 H 1.09002 * 109.53482 * 325.09594 * 10 9 7 12 12 C 1.53119 * 109.50623 * 85.19702 * 10 9 7 13 13 C 1.53116 * 109.16456 * 177.59581 * 12 10 9 14 14 C 1.53039 * 109.27732 * 302.34716 * 13 12 10 15 15 N 1.46845 * 109.52624 * 59.17590 * 14 13 12 16 16 C 1.46899 * 111.00058 * 174.16150 * 15 14 13 17 17 C 1.50697 * 109.46935 * 294.20997 * 16 15 14 18 18 C 1.33387 * 125.20287 * 90.00248 * 17 16 15 19 19 C 1.38427 * 114.91991 * 179.75128 * 18 17 16 20 20 C 1.33381 * 114.92374 * 0.25034 * 19 18 17 21 21 S 1.75886 * 125.20508 * 270.13702 * 17 16 15 22 22 C 1.46852 * 111.19784 * 298.26020 * 15 14 13 23 23 H 0.96995 * 119.99644 * 359.97438 * 1 2 3 24 24 H 0.97000 * 120.00471 * 359.97438 * 9 7 2 25 25 H 1.09001 * 109.52395 * 297.50082 * 12 10 9 26 26 H 1.08999 * 109.51954 * 57.68995 * 12 10 9 27 27 H 1.09004 * 109.50407 * 62.28313 * 13 12 10 28 28 H 1.08997 * 109.50949 * 182.36447 * 13 12 10 29 29 H 1.08999 * 109.46271 * 299.15952 * 14 13 12 30 30 H 1.09003 * 109.46364 * 179.19584 * 14 13 12 31 31 H 1.09004 * 109.47176 * 174.21417 * 16 15 14 32 32 H 1.08991 * 109.47066 * 54.21364 * 16 15 14 33 33 H 1.08002 * 122.54190 * 0.02679 * 18 17 16 34 34 H 1.08001 * 122.53885 * 180.22673 * 19 18 17 35 35 H 1.07994 * 125.20771 * 180.02562 * 20 19 18 36 36 H 1.08994 * 109.45869 * 181.75583 * 22 15 14 37 37 H 1.08997 * 109.45762 * 301.73438 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3462 -0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8916 2.3964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2023 -0.0010 9 7 1.3255 -2.3880 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 1 2.9699 -3.5512 -0.5884 12 6 2.4183 -4.0392 1.4377 13 6 3.1302 -5.3947 1.4341 14 6 2.2223 -6.4405 0.7828 15 7 1.9070 -6.0294 -0.5912 16 6 1.1514 -7.0752 -1.2934 17 6 2.0224 -8.2924 -1.4686 18 6 2.1161 -9.3021 -0.6019 19 6 2.9788 -10.3167 -0.9795 20 6 3.5896 -10.1285 -2.1502 21 16 3.0735 -8.5975 -2.8454 22 6 1.1811 -4.7529 -0.6102 23 1 -0.4849 0.8400 0.0004 24 1 0.3555 -2.3880 0.0002 25 1 3.0783 -3.2822 1.8614 26 1 1.5092 -4.1067 2.0352 27 1 4.0589 -5.3166 0.8689 28 1 3.3519 -5.6922 2.4590 29 1 1.2996 -6.5282 1.3564 30 1 2.7320 -7.4039 0.7658 31 1 0.8425 -6.7058 -2.2713 32 1 0.2697 -7.3402 -0.7100 33 1 1.5577 -9.3282 0.3222 34 1 3.1451 -11.1940 -0.3719 35 1 4.2931 -10.8119 -2.6024 36 1 0.9347 -4.4907 -1.6390 37 1 0.2634 -4.8485 -0.0299 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258523202.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:01:54 Heat of formation + Delta-G solvation = 27.672821 kcal Electronic energy + Delta-G solvation = -17873.010283 eV Core-core repulsion = 15162.145026 eV Total energy + Delta-G solvation = -2710.865258 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.29609 -38.54394 -36.42963 -34.40186 -32.84478 -31.18184 -29.57657 -27.24603 -25.77018 -24.40071 -23.55207 -22.54213 -20.79211 -19.99928 -19.15293 -18.00709 -17.14634 -16.52181 -16.32830 -15.94074 -15.42465 -15.36650 -14.85997 -14.58801 -14.51298 -13.86430 -13.57445 -13.54453 -13.35367 -13.07541 -12.89590 -12.81967 -12.35135 -12.23739 -12.04392 -12.00347 -11.76937 -11.57073 -11.50848 -11.22679 -10.88052 -9.63399 -9.33004 -9.25121 -9.01103 -7.94670 -5.23323 0.12810 0.80060 1.21429 1.47398 1.47916 1.58189 1.87556 2.54653 2.97469 3.38827 3.78051 3.93492 3.97861 4.13569 4.22453 4.27370 4.30917 4.43081 4.48846 4.57209 4.67049 4.74880 4.80463 4.82805 4.87089 5.02628 5.12901 5.17347 5.26182 5.42892 5.44687 5.50623 5.58122 5.64626 6.05144 6.13328 6.29059 7.33589 8.08066 8.32410 9.29151 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.038207 B = 0.003875 C = 0.003776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.678737 B = 7224.112092 C = 7412.640108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.075 4.075 3 Si 0.971 3.029 4 H -0.267 1.267 5 H -0.293 1.293 6 H -0.293 1.293 7 C -0.236 4.236 8 H 0.073 0.927 9 N -0.737 5.737 10 C 0.180 3.820 11 H 0.040 0.960 12 C -0.128 4.128 13 C -0.105 4.105 14 C 0.059 3.941 15 N -0.536 5.536 16 C 0.124 3.876 17 C -0.174 4.174 18 C -0.139 4.139 19 C -0.141 4.141 20 C -0.216 4.216 21 S 0.088 5.912 22 C 0.069 3.931 23 H 0.251 0.749 24 H 0.372 0.628 25 H 0.042 0.958 26 H 0.044 0.956 27 H 0.062 0.938 28 H 0.082 0.918 29 H 0.033 0.967 30 H 0.091 0.909 31 H 0.082 0.918 32 H 0.061 0.939 33 H 0.148 0.852 34 H 0.161 0.839 35 H 0.184 0.816 36 H 0.066 0.934 37 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.703 -22.947 -1.533 23.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.267 4.267 3 Si 0.801 3.199 4 H -0.192 1.192 5 H -0.220 1.220 6 H -0.220 1.220 7 C -0.368 4.368 8 H 0.091 0.909 9 N -0.377 5.377 10 C 0.071 3.929 11 H 0.058 0.942 12 C -0.168 4.168 13 C -0.144 4.144 14 C -0.069 4.069 15 N -0.261 5.261 16 C -0.005 4.005 17 C -0.292 4.292 18 C -0.171 4.171 19 C -0.171 4.171 20 C -0.352 4.352 21 S 0.351 5.649 22 C -0.060 4.060 23 H 0.060 0.940 24 H 0.203 0.797 25 H 0.061 0.939 26 H 0.063 0.937 27 H 0.081 0.919 28 H 0.100 0.900 29 H 0.052 0.948 30 H 0.109 0.891 31 H 0.100 0.900 32 H 0.079 0.921 33 H 0.166 0.834 34 H 0.178 0.822 35 H 0.201 0.799 36 H 0.084 0.916 37 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 6.652 -21.979 -3.139 23.177 hybrid contribution -1.249 0.473 1.667 2.136 sum 5.404 -21.506 -1.472 22.223 Atomic orbital electron populations 1.69820 1.06562 1.25934 1.59780 1.25529 0.96372 1.00947 1.03858 0.85098 0.78234 0.79929 0.76674 1.19155 1.22007 1.22017 1.19613 0.91309 0.85137 1.40721 0.90914 1.42554 1.05403 1.00943 1.88766 1.20305 0.93974 0.84425 0.94195 0.94172 1.22126 0.99402 0.96852 0.98443 1.21515 0.98501 0.93550 1.00820 1.22165 0.98492 0.99023 0.87182 1.61847 1.45319 1.01843 1.17068 1.20486 0.92708 0.87698 0.99606 1.24325 1.04849 1.00530 0.99524 1.20375 1.01749 0.93980 1.00949 1.20397 0.98311 1.01119 0.97266 1.25950 1.07651 1.00731 1.00881 1.84493 1.40234 1.17052 1.23080 1.22089 0.94622 0.88958 1.00304 0.94046 0.79656 0.93921 0.93749 0.91876 0.89984 0.94836 0.89121 0.90003 0.92102 0.83432 0.82156 0.79905 0.91560 0.95242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.97 13.06 21.65 0.28 -59.69 16 2 C -0.07 -4.36 5.50 84.86 0.47 -3.90 16 3 Si 0.97 46.81 29.55 68.60 2.03 48.84 16 4 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 5 H -0.29 -14.07 7.11 99.48 0.71 -13.36 16 6 H -0.29 -14.06 7.11 99.48 0.71 -13.36 16 7 C -0.24 -13.38 9.93 84.04 0.83 -12.54 16 8 H 0.07 4.02 7.83 -2.91 -0.02 3.99 16 9 N -0.74 -38.13 5.12 -322.68 -1.65 -39.78 16 10 C 0.18 7.43 2.93 45.04 0.13 7.57 16 11 H 0.04 1.78 8.08 -2.39 -0.02 1.76 16 12 C -0.13 -4.70 5.59 30.67 0.17 -4.52 16 13 C -0.11 -2.96 6.09 30.65 0.19 -2.77 16 14 C 0.06 1.50 5.25 86.33 0.45 1.95 16 15 N -0.54 -15.32 4.65 -900.93 -4.19 -19.50 16 16 C 0.12 2.97 5.46 85.56 0.47 3.44 16 17 C -0.17 -3.80 5.44 24.59 0.13 -3.66 16 18 C -0.14 -2.56 8.46 21.22 0.18 -2.38 16 19 C -0.14 -2.23 10.18 21.22 0.22 -2.02 16 20 C -0.22 -3.53 11.23 66.72 0.75 -2.78 16 21 S 0.09 1.84 23.33 -56.49 -1.32 0.52 16 22 C 0.07 2.39 4.93 86.33 0.43 2.82 16 23 H 0.25 14.98 8.31 -92.71 -0.77 14.21 16 24 H 0.37 20.50 7.80 -92.71 -0.72 19.77 16 25 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 26 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 27 H 0.06 1.82 8.14 -2.38 -0.02 1.81 16 28 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 29 H 0.03 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.09 2.04 5.95 -2.39 -0.01 2.02 16 31 H 0.08 1.99 7.99 -2.38 -0.02 1.97 16 32 H 0.06 1.34 8.12 -2.39 -0.02 1.32 16 33 H 0.15 2.30 8.04 -2.91 -0.02 2.28 16 34 H 0.16 1.72 8.06 -2.91 -0.02 1.70 16 35 H 0.18 2.02 8.06 -2.91 -0.02 2.00 16 36 H 0.07 2.39 8.01 -2.39 -0.02 2.37 16 37 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 Total: -1.00 -64.18 313.11 -0.11 -64.29 By element: Atomic # 1 Polarization: 23.80 SS G_CDS: 0.33 Total: 24.12 kcal Atomic # 6 Polarization: -23.22 SS G_CDS: 4.42 Total: -18.80 kcal Atomic # 7 Polarization: -113.41 SS G_CDS: -5.56 Total: -118.97 kcal Atomic # 14 Polarization: 46.81 SS G_CDS: 2.03 Total: 48.84 kcal Atomic # 16 Polarization: 1.84 SS G_CDS: -1.32 Total: 0.52 kcal Total: -64.18 -0.11 -64.29 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258523202.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.961 kcal (2) G-P(sol) polarization free energy of solvation -64.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.288 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds