Wall clock time and date at job start Mon Mar 30 2020 05:56:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36936 * 120.00301 * 2 1 4 4 H 1.07996 * 120.00085 * 158.80210 * 3 2 1 5 5 C 1.38820 * 119.99705 * 338.80559 * 3 2 1 6 6 N 1.31612 * 120.00118 * 348.48831 * 5 3 2 7 7 Si 1.86805 * 119.99692 * 168.76359 * 5 3 2 8 8 H 1.48497 * 109.47128 * 269.72251 * 7 5 3 9 9 H 1.48499 * 109.46955 * 29.72210 * 7 5 3 10 10 H 1.48501 * 109.46763 * 149.72488 * 7 5 3 11 11 C 1.46501 * 119.99861 * 180.02562 * 2 1 3 12 12 H 1.09000 * 110.28547 * 180.67466 * 11 2 1 13 13 C 1.54250 * 110.32725 * 58.54386 * 11 2 1 14 14 C 1.54382 * 105.05988 * 241.10529 * 13 11 2 15 15 N 1.48559 * 104.59605 * 23.85286 * 14 13 11 16 16 C 1.46901 * 111.00231 * 200.95902 * 15 14 13 17 17 C 1.50704 * 109.46902 * 69.87238 * 16 15 14 18 18 C 1.33385 * 125.20094 * 89.72123 * 17 16 15 19 19 C 1.38427 * 114.92005 * 179.85766 * 18 17 16 20 20 C 1.33385 * 114.91964 * 0.43280 * 19 18 17 21 21 S 1.75873 * 125.20239 * 270.02426 * 17 16 15 22 22 C 1.48555 * 104.22146 * 320.51679 * 15 14 13 23 23 H 1.09007 * 109.47040 * 84.94698 * 1 2 3 24 24 H 1.08997 * 109.47171 * 204.95242 * 1 2 3 25 25 H 1.09001 * 109.47147 * 324.95503 * 1 2 3 26 26 H 0.97002 * 120.00492 * 180.02562 * 6 5 3 27 27 H 1.09004 * 110.32821 * 359.97438 * 13 11 2 28 28 H 1.08996 * 110.32581 * 122.21084 * 13 11 2 29 29 H 1.09006 * 110.41318 * 142.63209 * 14 13 11 30 30 H 1.09000 * 110.41518 * 265.07143 * 14 13 11 31 31 H 1.08994 * 109.47106 * 189.87759 * 16 15 14 32 32 H 1.09001 * 109.46629 * 309.87574 * 16 15 14 33 33 H 1.08002 * 122.54139 * 0.02562 * 18 17 16 34 34 H 1.08000 * 122.54128 * 180.19834 * 19 18 17 35 35 H 1.07995 * 125.20649 * 179.79193 * 20 19 18 36 36 H 1.09001 * 110.41148 * 280.70401 * 22 15 14 37 37 H 1.09003 * 110.41364 * 158.25945 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1859 0.0000 4 1 3.1749 1.2175 0.3382 5 6 1.5261 2.3474 -0.4347 6 7 0.3671 2.2796 -1.0547 7 14 2.3355 4.0061 -0.1463 8 1 1.8866 4.5559 1.1580 9 1 3.8113 3.8409 -0.1324 10 1 1.9521 4.9399 -1.2355 11 6 2.1975 -1.2688 -0.0006 12 1 3.2718 -1.0849 0.0116 13 6 1.8117 -2.1097 -1.2348 14 6 1.1980 -3.4051 -0.6617 15 7 0.7229 -3.0264 0.6940 16 6 0.5713 -4.2115 1.5488 17 6 1.9314 -4.7703 1.8786 18 6 2.6731 -4.4184 2.9299 19 6 3.8903 -5.0702 3.0295 20 6 4.1409 -5.9448 2.0541 21 16 2.7869 -5.9808 0.9320 22 6 1.7844 -2.1269 1.2146 23 1 -0.3633 0.0905 -1.0237 24 1 -0.3633 -0.9317 0.4335 25 1 -0.3633 0.8414 0.5901 26 1 -0.0685 3.0912 -1.3587 27 1 1.0769 -1.5787 -1.8401 28 1 2.6968 -2.3402 -1.8276 29 1 0.3623 -3.7353 -1.2788 30 1 1.9544 -4.1870 -0.5948 31 1 0.0602 -3.9319 2.4700 32 1 -0.0139 -4.9660 1.0232 33 1 2.3474 -3.6827 3.6505 34 1 4.5860 -4.8819 3.8338 35 1 5.0378 -6.5400 1.9668 36 1 2.6327 -2.7087 1.5751 37 1 1.3904 -1.4945 2.0102 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258532351.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:56:23 Heat of formation + Delta-G solvation = 77.885575 kcal Electronic energy + Delta-G solvation = -18558.948792 eV Core-core repulsion = 15850.260922 eV Total energy + Delta-G solvation = -2708.687869 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.28166 -37.37020 -34.88844 -32.25364 -30.36556 -28.60874 -27.74814 -25.84620 -25.29545 -23.17171 -22.19962 -20.58814 -19.38018 -18.72616 -17.09477 -16.79612 -15.71056 -15.54814 -15.11153 -14.29641 -13.97682 -13.55193 -13.25993 -12.89674 -12.67616 -12.44970 -12.37427 -11.98018 -11.55605 -11.45227 -11.00557 -10.95525 -10.79173 -10.70299 -10.59398 -10.44351 -10.30031 -9.88719 -9.75395 -9.67873 -8.67269 -8.46573 -8.41053 -8.11944 -6.62775 -5.59936 -3.05264 0.96250 1.61302 1.96948 2.72717 3.43525 3.49425 3.50800 4.42937 4.57362 4.83547 5.00872 5.13364 5.32155 5.44520 5.52025 5.56120 5.60252 5.71255 5.83377 5.85321 6.06027 6.09240 6.24544 6.29241 6.31790 6.42230 6.45423 6.56439 6.84578 6.99828 7.22433 7.35273 7.37758 7.65532 7.88499 8.00945 8.51525 9.37078 10.01480 10.51213 11.43432 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.033569 B = 0.004972 C = 0.004703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 833.902403 B = 5629.686824 C = 5951.894400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.163 3.837 2 N -0.589 5.589 3 C -0.253 4.253 4 H 0.066 0.934 5 C 0.001 3.999 6 N -0.907 5.907 7 Si 0.902 3.098 8 H -0.289 1.289 9 H -0.281 1.281 10 H -0.292 1.292 11 C 0.178 3.822 12 H 0.064 0.936 13 C -0.142 4.142 14 C 0.027 3.973 15 N -0.486 5.486 16 C 0.108 3.892 17 C -0.196 4.196 18 C -0.132 4.132 19 C -0.132 4.132 20 C -0.222 4.222 21 S 0.093 5.907 22 C 0.008 3.992 23 H 0.021 0.979 24 H 0.023 0.977 25 H 0.034 0.966 26 H 0.250 0.750 27 H 0.079 0.921 28 H 0.054 0.946 29 H 0.071 0.929 30 H 0.041 0.959 31 H 0.093 0.907 32 H 0.079 0.921 33 H 0.140 0.860 34 H 0.137 0.863 35 H 0.160 0.840 36 H 0.049 0.951 37 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.889 -17.110 5.641 18.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.311 5.311 3 C -0.383 4.383 4 H 0.084 0.916 5 C -0.197 4.197 6 N -0.553 5.553 7 Si 0.733 3.267 8 H -0.216 1.216 9 H -0.207 1.207 10 H -0.218 1.218 11 C 0.068 3.932 12 H 0.082 0.918 13 C -0.182 4.182 14 C -0.102 4.102 15 N -0.208 5.208 16 C -0.022 4.022 17 C -0.316 4.316 18 C -0.163 4.163 19 C -0.162 4.162 20 C -0.358 4.358 21 S 0.355 5.645 22 C -0.122 4.122 23 H 0.039 0.961 24 H 0.042 0.958 25 H 0.053 0.947 26 H 0.060 0.940 27 H 0.097 0.903 28 H 0.073 0.927 29 H 0.089 0.911 30 H 0.059 0.941 31 H 0.111 0.889 32 H 0.098 0.902 33 H 0.157 0.843 34 H 0.155 0.845 35 H 0.177 0.823 36 H 0.067 0.933 37 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 2.917 -17.473 4.222 18.211 hybrid contribution 1.624 1.274 1.407 2.498 sum 4.540 -16.199 5.629 17.740 Atomic orbital electron populations 1.20766 0.82023 0.96441 0.98912 1.43981 1.02153 0.99704 1.85215 1.19269 0.97167 0.85498 1.36368 0.91618 1.24967 0.97620 0.98236 0.98904 1.70110 1.17190 1.26547 1.41433 0.86283 0.78729 0.84405 0.77285 1.21640 1.20654 1.21849 1.21000 0.95268 0.86420 0.90501 0.91800 1.22962 1.00228 0.95018 0.99979 1.23238 0.98318 0.97727 0.90878 1.65853 1.41986 1.11137 1.01814 1.21093 0.89501 0.92516 0.99107 1.25436 1.03832 1.02474 0.99814 1.20167 0.94754 1.02167 0.99210 1.20180 0.97952 0.97880 1.00222 1.25610 1.03651 1.06666 0.99857 1.84272 1.11451 1.39996 1.28737 1.24034 0.92780 0.95170 1.00199 0.96096 0.95845 0.94678 0.93965 0.90253 0.92695 0.91060 0.94075 0.88901 0.90247 0.84259 0.84511 0.82279 0.93274 0.90037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.17 7.93 59.85 0.47 4.65 16 2 N -0.59 -15.02 2.79 -171.90 -0.48 -15.50 16 3 C -0.25 -7.09 9.64 -15.06 -0.15 -7.23 16 4 H 0.07 1.80 7.81 -52.49 -0.41 1.39 16 5 C 0.00 0.02 5.14 -17.43 -0.09 -0.07 16 6 N -0.91 -27.07 10.52 55.49 0.58 -26.49 16 7 Si 0.90 22.28 29.57 -169.99 -5.03 17.25 16 8 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 9 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 10 H -0.29 -7.28 7.11 56.52 0.40 -6.87 16 11 C 0.18 3.74 3.55 -66.55 -0.24 3.51 16 12 H 0.06 1.36 7.90 -51.93 -0.41 0.95 16 13 C -0.14 -2.68 6.48 -25.35 -0.16 -2.84 16 14 C 0.03 0.42 6.33 -2.18 -0.01 0.41 16 15 N -0.49 -7.90 4.41 -231.40 -1.02 -8.92 16 16 C 0.11 1.42 6.07 -4.97 -0.03 1.39 16 17 C -0.20 -2.47 4.19 -36.00 -0.15 -2.63 16 18 C -0.13 -1.60 8.02 -41.21 -0.33 -1.93 16 19 C -0.13 -1.45 10.18 -41.21 -0.42 -1.87 16 20 C -0.22 -2.37 11.23 29.04 0.33 -2.04 16 21 S 0.09 1.07 21.54 -107.50 -2.32 -1.25 16 22 C 0.01 0.14 5.06 -2.18 -0.01 0.13 16 23 H 0.02 0.58 7.33 -51.93 -0.38 0.20 16 24 H 0.02 0.54 6.18 -51.93 -0.32 0.22 16 25 H 0.03 0.97 7.17 -51.93 -0.37 0.60 16 26 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 27 H 0.08 1.72 7.36 -51.93 -0.38 1.33 16 28 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 30 H 0.04 0.60 5.53 -51.93 -0.29 0.32 16 31 H 0.09 1.15 8.14 -51.93 -0.42 0.72 16 32 H 0.08 0.95 8.08 -51.93 -0.42 0.53 16 33 H 0.14 1.61 8.06 -52.49 -0.42 1.19 16 34 H 0.14 1.24 8.06 -52.49 -0.42 0.81 16 35 H 0.16 1.32 8.06 -52.49 -0.42 0.90 16 36 H 0.05 0.82 4.81 -51.93 -0.25 0.57 16 37 H 0.08 1.59 8.04 -51.93 -0.42 1.18 16 LS Contribution 301.08 15.07 4.54 4.54 Total: -1.00 -30.04 301.08 -9.83 -39.87 By element: Atomic # 1 Polarization: 4.37 SS G_CDS: -5.32 Total: -0.95 kcal Atomic # 6 Polarization: -7.76 SS G_CDS: -0.79 Total: -8.55 kcal Atomic # 7 Polarization: -50.00 SS G_CDS: -0.92 Total: -50.91 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.03 Total: 17.25 kcal Atomic # 16 Polarization: 1.07 SS G_CDS: -2.32 Total: -1.25 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -30.04 -9.83 -39.87 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258532351.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.755 kcal (2) G-P(sol) polarization free energy of solvation -30.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.869 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds