Wall clock time and date at job start Mon Mar 30 2020 05:56:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36936 * 120.00301 * 2 1 4 4 H 1.07996 * 120.00085 * 158.80210 * 3 2 1 5 5 C 1.38820 * 119.99705 * 338.80559 * 3 2 1 6 6 N 1.31612 * 120.00118 * 348.48831 * 5 3 2 7 7 Si 1.86805 * 119.99692 * 168.76359 * 5 3 2 8 8 H 1.48497 * 109.47128 * 269.72251 * 7 5 3 9 9 H 1.48499 * 109.46955 * 29.72210 * 7 5 3 10 10 H 1.48501 * 109.46763 * 149.72488 * 7 5 3 11 11 C 1.46501 * 119.99861 * 180.02562 * 2 1 3 12 12 H 1.09000 * 110.28547 * 180.67466 * 11 2 1 13 13 C 1.54250 * 110.32725 * 58.54386 * 11 2 1 14 14 C 1.54382 * 105.05988 * 241.10529 * 13 11 2 15 15 N 1.48559 * 104.59605 * 23.85286 * 14 13 11 16 16 C 1.46901 * 111.00231 * 200.95902 * 15 14 13 17 17 C 1.50704 * 109.46902 * 69.87238 * 16 15 14 18 18 C 1.33385 * 125.20094 * 89.72123 * 17 16 15 19 19 C 1.38427 * 114.92005 * 179.85766 * 18 17 16 20 20 C 1.33385 * 114.91964 * 0.43280 * 19 18 17 21 21 S 1.75873 * 125.20239 * 270.02426 * 17 16 15 22 22 C 1.48555 * 104.22146 * 320.51679 * 15 14 13 23 23 H 1.09007 * 109.47040 * 84.94698 * 1 2 3 24 24 H 1.08997 * 109.47171 * 204.95242 * 1 2 3 25 25 H 1.09001 * 109.47147 * 324.95503 * 1 2 3 26 26 H 0.97002 * 120.00492 * 180.02562 * 6 5 3 27 27 H 1.09004 * 110.32821 * 359.97438 * 13 11 2 28 28 H 1.08996 * 110.32581 * 122.21084 * 13 11 2 29 29 H 1.09006 * 110.41318 * 142.63209 * 14 13 11 30 30 H 1.09000 * 110.41518 * 265.07143 * 14 13 11 31 31 H 1.08994 * 109.47106 * 189.87759 * 16 15 14 32 32 H 1.09001 * 109.46629 * 309.87574 * 16 15 14 33 33 H 1.08002 * 122.54139 * 0.02562 * 18 17 16 34 34 H 1.08000 * 122.54128 * 180.19834 * 19 18 17 35 35 H 1.07995 * 125.20649 * 179.79193 * 20 19 18 36 36 H 1.09001 * 110.41148 * 280.70401 * 22 15 14 37 37 H 1.09003 * 110.41364 * 158.25945 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1859 0.0000 4 1 3.1749 1.2175 0.3382 5 6 1.5261 2.3474 -0.4347 6 7 0.3671 2.2796 -1.0547 7 14 2.3355 4.0061 -0.1463 8 1 1.8866 4.5559 1.1580 9 1 3.8113 3.8409 -0.1324 10 1 1.9521 4.9399 -1.2355 11 6 2.1975 -1.2688 -0.0006 12 1 3.2718 -1.0849 0.0116 13 6 1.8117 -2.1097 -1.2348 14 6 1.1980 -3.4051 -0.6617 15 7 0.7229 -3.0264 0.6940 16 6 0.5713 -4.2115 1.5488 17 6 1.9314 -4.7703 1.8786 18 6 2.6731 -4.4184 2.9299 19 6 3.8903 -5.0702 3.0295 20 6 4.1409 -5.9448 2.0541 21 16 2.7869 -5.9808 0.9320 22 6 1.7844 -2.1269 1.2146 23 1 -0.3633 0.0905 -1.0237 24 1 -0.3633 -0.9317 0.4335 25 1 -0.3633 0.8414 0.5901 26 1 -0.0685 3.0912 -1.3587 27 1 1.0769 -1.5787 -1.8401 28 1 2.6968 -2.3402 -1.8276 29 1 0.3623 -3.7353 -1.2788 30 1 1.9544 -4.1870 -0.5948 31 1 0.0602 -3.9319 2.4700 32 1 -0.0139 -4.9660 1.0232 33 1 2.3474 -3.6827 3.6505 34 1 4.5860 -4.8819 3.8338 35 1 5.0378 -6.5400 1.9668 36 1 2.6327 -2.7087 1.5751 37 1 1.3904 -1.4945 2.0102 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258532351.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:56:22 Heat of formation + Delta-G solvation = 60.171043 kcal Electronic energy + Delta-G solvation = -18559.716951 eV Core-core repulsion = 15850.260922 eV Total energy + Delta-G solvation = -2709.456029 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.57336 -38.48153 -36.64042 -33.87101 -32.07420 -29.80073 -29.29123 -27.89259 -26.57342 -24.46898 -23.78522 -21.84576 -20.80554 -19.91173 -18.82021 -18.04714 -17.29466 -16.81393 -16.43610 -15.91150 -15.35197 -15.19161 -14.69805 -14.27133 -14.02991 -13.72258 -13.41660 -13.39463 -13.02799 -12.87107 -12.77397 -12.50895 -12.43672 -12.27089 -12.18023 -12.06164 -11.87499 -11.68045 -11.57011 -11.45793 -10.59188 -9.61124 -9.41551 -9.27938 -8.71187 -7.76036 -5.23627 0.08037 0.74031 1.10294 1.46917 1.48366 1.56960 1.85165 2.53403 3.18268 3.34854 3.68555 3.88946 3.95967 3.98513 4.25483 4.32255 4.45694 4.53423 4.67770 4.68578 4.76556 4.82774 4.85331 4.98430 5.02546 5.15019 5.21364 5.31125 5.39883 5.41476 5.52720 5.58741 5.67669 5.83825 5.96176 6.13433 6.37486 7.21422 7.96105 8.40672 9.26010 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.033569 B = 0.004972 C = 0.004703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 833.902403 B = 5629.686824 C = 5951.894400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.189 3.811 2 N -0.604 5.604 3 C -0.262 4.262 4 H 0.070 0.930 5 C -0.056 4.056 6 N -0.940 5.940 7 Si 0.968 3.032 8 H -0.287 1.287 9 H -0.268 1.268 10 H -0.296 1.296 11 C 0.166 3.834 12 H 0.058 0.942 13 C -0.136 4.136 14 C 0.038 3.962 15 N -0.502 5.502 16 C 0.111 3.889 17 C -0.215 4.215 18 C -0.136 4.136 19 C -0.144 4.144 20 C -0.216 4.216 21 S 0.092 5.908 22 C 0.027 3.973 23 H -0.009 1.009 24 H 0.047 0.953 25 H 0.003 0.997 26 H 0.245 0.755 27 H 0.047 0.953 28 H 0.068 0.932 29 H 0.081 0.919 30 H 0.059 0.941 31 H 0.099 0.901 32 H 0.093 0.907 33 H 0.141 0.859 34 H 0.156 0.844 35 H 0.184 0.816 36 H 0.066 0.934 37 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.277 -18.722 6.468 20.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 N -0.326 5.326 3 C -0.393 4.393 4 H 0.087 0.913 5 C -0.250 4.250 6 N -0.588 5.588 7 Si 0.797 3.203 8 H -0.214 1.214 9 H -0.193 1.193 10 H -0.223 1.223 11 C 0.058 3.942 12 H 0.076 0.924 13 C -0.176 4.176 14 C -0.090 4.090 15 N -0.224 5.224 16 C -0.018 4.018 17 C -0.334 4.334 18 C -0.168 4.168 19 C -0.174 4.174 20 C -0.352 4.352 21 S 0.355 5.645 22 C -0.102 4.102 23 H 0.009 0.991 24 H 0.065 0.935 25 H 0.022 0.978 26 H 0.055 0.945 27 H 0.066 0.934 28 H 0.087 0.913 29 H 0.099 0.901 30 H 0.077 0.923 31 H 0.117 0.883 32 H 0.111 0.889 33 H 0.159 0.841 34 H 0.174 0.826 35 H 0.201 0.799 36 H 0.084 0.916 37 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 4.331 -19.132 5.063 20.259 hybrid contribution 1.251 1.659 1.183 2.390 sum 5.581 -17.473 6.245 19.377 Atomic orbital electron populations 1.20380 0.82518 0.96132 0.96558 1.44155 1.02104 1.00804 1.85506 1.19632 0.97425 0.86720 1.35487 0.91261 1.25749 0.98384 1.01674 0.99213 1.70289 1.18676 1.26958 1.42835 0.85242 0.78371 0.79936 0.76747 1.21410 1.19312 1.22275 1.21254 0.94569 0.85430 0.92942 0.92384 1.22802 1.00118 0.95941 0.98784 1.23153 0.98989 0.96286 0.90593 1.65763 1.41385 1.12846 1.02398 1.21076 0.90303 0.91537 0.98927 1.25354 1.03775 1.03602 1.00674 1.20372 0.95219 1.02111 0.99060 1.20412 0.97954 0.97919 1.01076 1.25966 1.03894 1.06301 0.99029 1.84253 1.11805 1.39572 1.28858 1.23675 0.93777 0.94847 0.97909 0.99117 0.93458 0.97774 0.94547 0.93448 0.91333 0.90051 0.92313 0.88329 0.88857 0.84124 0.82615 0.79895 0.91617 0.91872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.19 9.95 7.93 127.77 1.01 10.96 16 2 N -0.60 -31.25 2.79 -697.77 -1.95 -33.19 16 3 C -0.26 -14.84 9.64 84.04 0.81 -14.03 16 4 H 0.07 3.79 7.81 -2.91 -0.02 3.76 16 5 C -0.06 -3.21 5.14 84.87 0.44 -2.78 16 6 N -0.94 -57.70 10.52 21.65 0.23 -57.47 16 7 Si 0.97 46.30 29.57 68.60 2.03 48.33 16 8 H -0.29 -13.53 7.11 99.48 0.71 -12.83 16 9 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 10 H -0.30 -14.24 7.11 99.48 0.71 -13.54 16 11 C 0.17 6.93 3.55 45.89 0.16 7.09 16 12 H 0.06 2.45 7.90 -2.39 -0.02 2.43 16 13 C -0.14 -5.08 6.48 31.49 0.20 -4.87 16 14 C 0.04 1.13 6.33 86.45 0.55 1.68 16 15 N -0.50 -15.50 4.41 -886.02 -3.91 -19.41 16 16 C 0.11 2.67 6.07 85.56 0.52 3.19 16 17 C -0.22 -4.90 4.19 24.59 0.10 -4.80 16 18 C -0.14 -2.99 8.02 21.22 0.17 -2.82 16 19 C -0.14 -2.75 10.18 21.22 0.22 -2.53 16 20 C -0.22 -3.91 11.23 66.72 0.75 -3.16 16 21 S 0.09 1.87 21.54 -56.49 -1.22 0.65 16 22 C 0.03 0.95 5.06 86.45 0.44 1.38 16 23 H -0.01 -0.55 7.33 -2.38 -0.02 -0.57 16 24 H 0.05 2.21 6.18 -2.39 -0.01 2.19 16 25 H 0.00 0.20 7.17 -2.39 -0.02 0.19 16 26 H 0.25 14.64 8.31 -92.71 -0.77 13.87 16 27 H 0.05 2.07 7.36 -2.38 -0.02 2.05 16 28 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 29 H 0.08 2.30 8.14 -2.38 -0.02 2.28 16 30 H 0.06 1.57 5.53 -2.39 -0.01 1.55 16 31 H 0.10 2.24 8.14 -2.39 -0.02 2.22 16 32 H 0.09 1.98 8.08 -2.39 -0.02 1.96 16 33 H 0.14 2.99 8.06 -2.91 -0.02 2.96 16 34 H 0.16 2.32 8.06 -2.91 -0.02 2.30 16 35 H 0.18 2.34 8.06 -2.91 -0.02 2.32 16 36 H 0.07 2.06 4.81 -2.39 -0.01 2.05 16 37 H 0.06 2.43 8.04 -2.39 -0.02 2.41 16 Total: -1.00 -64.89 301.08 1.60 -63.29 By element: Atomic # 1 Polarization: 7.43 SS G_CDS: 1.05 Total: 8.48 kcal Atomic # 6 Polarization: -16.05 SS G_CDS: 5.37 Total: -10.68 kcal Atomic # 7 Polarization: -104.44 SS G_CDS: -5.63 Total: -110.07 kcal Atomic # 14 Polarization: 46.30 SS G_CDS: 2.03 Total: 48.33 kcal Atomic # 16 Polarization: 1.87 SS G_CDS: -1.22 Total: 0.65 kcal Total: -64.89 1.60 -63.29 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258532351.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.458 kcal (2) G-P(sol) polarization free energy of solvation -64.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.287 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds