Wall clock time and date at job start Mon Mar 30 2020 05:46:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46956 * 111.00196 * 2 1 4 4 C 1.53051 * 109.36544 * 176.81200 * 3 2 1 5 5 N 1.46953 * 109.36287 * 58.40566 * 4 3 2 6 6 C 1.46892 * 111.00328 * 176.80943 * 5 4 3 7 7 C 1.50699 * 109.47292 * 293.95659 * 6 5 4 8 8 C 1.33392 * 125.20073 * 89.71257 * 7 6 5 9 9 C 1.38434 * 114.91707 * 179.86164 * 8 7 6 10 10 C 1.33384 * 114.92050 * 0.43040 * 9 8 7 11 11 S 1.75880 * 125.20437 * 270.02296 * 7 6 5 12 12 C 1.46956 * 110.88146 * 300.68113 * 5 4 3 13 13 C 1.46963 * 110.99593 * 236.20848 * 2 1 3 14 14 H 1.08997 * 109.48973 * 63.21927 * 13 2 1 15 15 C 1.50698 * 109.48565 * 303.15181 * 13 2 1 16 16 H 1.07998 * 120.00858 * 324.88328 * 15 13 2 17 17 C 1.37881 * 119.99937 * 144.88346 * 15 13 2 18 18 N 1.31512 * 119.99791 * 5.91930 * 17 15 13 19 19 Si 1.86796 * 120.00393 * 185.92184 * 17 15 13 20 20 H 1.48500 * 109.47154 * 89.99319 * 19 17 15 21 21 H 1.48493 * 109.47397 * 209.99895 * 19 17 15 22 22 H 1.48508 * 109.46880 * 330.00083 * 19 17 15 23 23 H 1.09004 * 109.47432 * 65.72793 * 1 2 3 24 24 H 1.09000 * 109.47121 * 305.73185 * 1 2 3 25 25 H 1.09000 * 109.47311 * 185.73204 * 1 2 3 26 26 H 1.08997 * 109.49314 * 296.78453 * 3 2 1 27 27 H 1.09002 * 109.48174 * 56.82857 * 3 2 1 28 28 H 1.08990 * 109.48845 * 178.37212 * 4 3 2 29 29 H 1.08997 * 109.48759 * 298.44382 * 4 3 2 30 30 H 1.08998 * 109.47062 * 53.95373 * 6 5 4 31 31 H 1.09002 * 109.47491 * 173.95260 * 6 5 4 32 32 H 1.07993 * 122.54425 * 0.02562 * 8 7 6 33 33 H 1.07999 * 122.53830 * 180.19968 * 9 8 7 34 34 H 1.08003 * 125.20797 * 179.79021 * 10 9 8 35 35 H 1.09002 * 109.49220 * 179.28458 * 12 5 4 36 36 H 1.08997 * 109.48805 * 299.35094 * 12 5 4 37 37 H 0.97005 * 120.00041 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9957 1.3719 0.0000 4 6 3.5235 1.3290 0.0803 5 7 4.0501 0.5659 -1.0598 6 6 5.5190 0.5659 -1.0600 7 6 6.0214 1.9657 -1.3028 8 6 6.2727 2.8681 -0.3531 9 6 6.7308 4.0897 -0.8158 10 6 6.8429 4.1824 -2.1417 11 16 6.3587 2.6622 -2.8822 12 6 3.5234 -0.8060 -1.0600 13 6 1.9956 -0.7631 -1.1403 14 1 1.6936 -0.2818 -2.0705 15 6 1.4504 -2.1674 -1.1001 16 1 1.2868 -2.6564 -0.1512 17 6 1.1603 -2.8282 -2.2750 18 7 1.4671 -2.2803 -3.4305 19 14 0.3316 -4.5015 -2.2255 20 1 -1.1426 -4.3247 -2.2513 21 1 0.7553 -5.2989 -3.4044 22 1 0.7232 -5.2112 -0.9812 23 1 -0.3634 0.4224 -0.9368 24 1 -0.3633 0.6001 0.8342 25 1 -0.3634 -1.0225 0.1026 26 1 1.6938 1.8774 -0.9173 27 1 1.6011 1.9128 0.8601 28 1 3.9178 2.3447 0.0513 29 1 3.8254 0.8477 1.0105 30 1 5.8824 0.2117 -0.0953 31 1 5.8823 -0.0925 -1.8490 32 1 6.1321 2.6605 0.6973 33 1 6.9752 4.9072 -0.1536 34 1 7.1797 5.0569 -2.6785 35 1 3.9176 -1.3469 -1.9203 36 1 3.8253 -1.3115 -0.1427 37 1 1.2627 -2.7450 -4.2571 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259889448.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:46:16 Heat of formation + Delta-G solvation = 49.394796 kcal Electronic energy + Delta-G solvation = -18365.825596 eV Core-core repulsion = 15655.902274 eV Total energy + Delta-G solvation = -2709.923322 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -38.73109 -37.43675 -34.79464 -32.76097 -30.49423 -29.84076 -27.50364 -25.23231 -24.86988 -22.84045 -22.31212 -21.23241 -19.15058 -18.60565 -16.97810 -16.37880 -15.39213 -15.30854 -14.70691 -14.32898 -13.88100 -13.64747 -13.49251 -13.26056 -12.77160 -12.51046 -12.31474 -12.06591 -11.95581 -11.40060 -11.09067 -11.02664 -10.96898 -10.70711 -10.61700 -10.53637 -10.29181 -9.85601 -9.65628 -9.07844 -8.57971 -8.47304 -8.29295 -7.65193 -7.09778 -6.07106 -4.12487 1.14903 1.82063 2.21365 2.85938 3.28048 3.35410 3.38767 4.37073 4.63369 5.01959 5.06208 5.14857 5.30995 5.43872 5.63074 5.68673 5.77488 5.88303 5.94633 6.00215 6.22638 6.26922 6.33134 6.40598 6.45652 6.56412 6.63657 6.68403 6.73242 6.92001 7.24185 7.54731 7.66331 7.79451 7.86667 8.06885 8.26924 8.63519 9.04331 9.54262 11.00294 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.028255 B = 0.005170 C = 0.004671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.739236 B = 5414.085392 C = 5992.728016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.048 3.952 2 N -0.547 5.547 3 C 0.057 3.943 4 C 0.062 3.938 5 N -0.537 5.537 6 C 0.119 3.881 7 C -0.145 4.145 8 C -0.151 4.151 9 C -0.132 4.132 10 C -0.231 4.231 11 S 0.118 5.882 12 C 0.078 3.922 13 C 0.210 3.790 14 H 0.038 0.962 15 C -0.508 4.508 16 H 0.061 0.939 17 C 0.065 3.935 18 N -0.886 5.886 19 Si 0.893 3.107 20 H -0.280 1.280 21 H -0.287 1.287 22 H -0.273 1.273 23 H 0.012 0.988 24 H 0.038 0.962 25 H 0.074 0.926 26 H 0.028 0.972 27 H 0.060 0.940 28 H 0.068 0.932 29 H 0.031 0.969 30 H 0.048 0.952 31 H 0.082 0.918 32 H 0.135 0.865 33 H 0.134 0.866 34 H 0.158 0.842 35 H 0.074 0.926 36 H 0.023 0.977 37 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.628 10.259 3.887 13.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 N -0.273 5.273 3 C -0.072 4.072 4 C -0.066 4.066 5 N -0.262 5.262 6 C -0.010 4.010 7 C -0.264 4.264 8 C -0.182 4.182 9 C -0.163 4.163 10 C -0.367 4.367 11 S 0.381 5.619 12 C -0.049 4.049 13 C 0.104 3.896 14 H 0.056 0.944 15 C -0.547 4.547 16 H 0.080 0.920 17 C -0.138 4.138 18 N -0.523 5.523 19 Si 0.721 3.279 20 H -0.206 1.206 21 H -0.213 1.213 22 H -0.197 1.197 23 H 0.030 0.970 24 H 0.057 0.943 25 H 0.093 0.907 26 H 0.047 0.953 27 H 0.078 0.922 28 H 0.086 0.914 29 H 0.050 0.950 30 H 0.066 0.934 31 H 0.100 0.900 32 H 0.152 0.848 33 H 0.151 0.849 34 H 0.176 0.824 35 H 0.092 0.908 36 H 0.041 0.959 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 8.532 9.689 2.179 13.093 hybrid contribution -0.340 -0.239 1.329 1.392 sum 8.192 9.450 3.508 12.989 Atomic orbital electron populations 1.22019 0.88501 1.01961 0.97576 1.62352 1.07222 1.10556 1.47142 1.22027 0.93973 0.91970 0.99191 1.22100 0.95175 0.97720 0.91636 1.62342 1.04145 1.17241 1.42461 1.20532 0.89838 0.89806 1.00823 1.24553 1.05559 1.00814 0.95435 1.20091 1.04555 0.93270 1.00307 1.20079 1.03052 0.98376 0.94828 1.25596 1.10689 1.02262 0.98184 1.84399 1.63039 1.05495 1.08934 1.22484 0.98226 0.84802 0.99383 1.19405 0.88897 0.93341 0.87954 0.94441 1.20989 1.42890 0.98241 0.92562 0.92037 1.25026 0.95254 0.98031 0.95488 1.69982 1.46339 1.38633 0.97379 0.86571 0.79836 0.83849 0.77634 1.20597 1.21274 1.19740 0.96971 0.94320 0.90689 0.95336 0.92207 0.91392 0.95049 0.93444 0.89956 0.84767 0.84852 0.82409 0.90803 0.95903 0.92790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.00 9.24 60.07 0.55 1.55 16 2 N -0.55 -12.20 4.78 -236.12 -1.13 -13.33 16 3 C 0.06 1.11 5.62 -3.77 -0.02 1.09 16 4 C 0.06 1.12 5.35 -3.77 -0.02 1.10 16 5 N -0.54 -10.55 4.70 -235.93 -1.11 -11.66 16 6 C 0.12 1.97 5.46 -4.98 -0.03 1.94 16 7 C -0.15 -2.16 5.45 -36.00 -0.20 -2.35 16 8 C -0.15 -2.00 8.50 -41.20 -0.35 -2.35 16 9 C -0.13 -1.56 10.18 -41.21 -0.42 -1.98 16 10 C -0.23 -2.72 11.23 29.04 0.33 -2.39 16 11 S 0.12 1.63 23.33 -107.50 -2.51 -0.88 16 12 C 0.08 1.79 4.87 -3.77 -0.02 1.77 16 13 C 0.21 5.29 2.03 -68.80 -0.14 5.16 16 14 H 0.04 1.09 7.39 -51.93 -0.38 0.71 16 15 C -0.51 -13.67 6.98 -34.44 -0.24 -13.91 16 16 H 0.06 1.68 7.82 -52.49 -0.41 1.27 16 17 C 0.07 1.78 5.45 -17.82 -0.10 1.68 16 18 N -0.89 -25.25 12.85 55.43 0.71 -24.54 16 19 Si 0.89 20.94 29.54 -169.99 -5.02 15.92 16 20 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 21 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 22 H -0.27 -6.32 7.11 56.52 0.40 -5.91 16 23 H 0.01 0.26 8.14 -51.93 -0.42 -0.17 16 24 H 0.04 0.68 8.10 -51.93 -0.42 0.26 16 25 H 0.07 1.64 7.07 -51.93 -0.37 1.27 16 26 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.06 1.02 8.11 -51.93 -0.42 0.59 16 28 H 0.07 1.11 6.11 -51.93 -0.32 0.80 16 29 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.05 0.74 8.12 -51.93 -0.42 0.32 16 31 H 0.08 1.36 8.03 -51.93 -0.42 0.94 16 32 H 0.13 1.61 8.05 -52.49 -0.42 1.19 16 33 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 34 H 0.16 1.45 8.06 -52.48 -0.42 1.03 16 35 H 0.07 1.81 8.07 -51.93 -0.42 1.39 16 36 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 LS Contribution 310.74 15.07 4.68 4.68 Total: -1.00 -28.50 310.74 -10.69 -39.20 By element: Atomic # 1 Polarization: 4.97 SS G_CDS: -5.67 Total: -0.70 kcal Atomic # 6 Polarization: -8.05 SS G_CDS: -0.65 Total: -8.70 kcal Atomic # 7 Polarization: -48.00 SS G_CDS: -1.52 Total: -49.53 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Atomic # 16 Polarization: 1.63 SS G_CDS: -2.51 Total: -0.88 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -28.50 -10.69 -39.20 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259889448.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.592 kcal (2) G-P(sol) polarization free energy of solvation -28.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.198 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds