Wall clock time and date at job start Mon Mar 30 2020 05:46:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46956 * 111.00196 * 2 1 4 4 C 1.53051 * 109.36544 * 176.81200 * 3 2 1 5 5 N 1.46953 * 109.36287 * 58.40566 * 4 3 2 6 6 C 1.46892 * 111.00328 * 176.80943 * 5 4 3 7 7 C 1.50699 * 109.47292 * 293.95659 * 6 5 4 8 8 C 1.33392 * 125.20073 * 89.71257 * 7 6 5 9 9 C 1.38434 * 114.91707 * 179.86164 * 8 7 6 10 10 C 1.33384 * 114.92050 * 0.43040 * 9 8 7 11 11 S 1.75880 * 125.20437 * 270.02296 * 7 6 5 12 12 C 1.46956 * 110.88146 * 300.68113 * 5 4 3 13 13 C 1.46963 * 110.99593 * 236.20848 * 2 1 3 14 14 H 1.08997 * 109.48973 * 63.21927 * 13 2 1 15 15 C 1.50698 * 109.48565 * 303.15181 * 13 2 1 16 16 H 1.07998 * 120.00858 * 324.88328 * 15 13 2 17 17 C 1.37881 * 119.99937 * 144.88346 * 15 13 2 18 18 N 1.31512 * 119.99791 * 5.91930 * 17 15 13 19 19 Si 1.86796 * 120.00393 * 185.92184 * 17 15 13 20 20 H 1.48500 * 109.47154 * 89.99319 * 19 17 15 21 21 H 1.48493 * 109.47397 * 209.99895 * 19 17 15 22 22 H 1.48508 * 109.46880 * 330.00083 * 19 17 15 23 23 H 1.09004 * 109.47432 * 65.72793 * 1 2 3 24 24 H 1.09000 * 109.47121 * 305.73185 * 1 2 3 25 25 H 1.09000 * 109.47311 * 185.73204 * 1 2 3 26 26 H 1.08997 * 109.49314 * 296.78453 * 3 2 1 27 27 H 1.09002 * 109.48174 * 56.82857 * 3 2 1 28 28 H 1.08990 * 109.48845 * 178.37212 * 4 3 2 29 29 H 1.08997 * 109.48759 * 298.44382 * 4 3 2 30 30 H 1.08998 * 109.47062 * 53.95373 * 6 5 4 31 31 H 1.09002 * 109.47491 * 173.95260 * 6 5 4 32 32 H 1.07993 * 122.54425 * 0.02562 * 8 7 6 33 33 H 1.07999 * 122.53830 * 180.19968 * 9 8 7 34 34 H 1.08003 * 125.20797 * 179.79021 * 10 9 8 35 35 H 1.09002 * 109.49220 * 179.28458 * 12 5 4 36 36 H 1.08997 * 109.48805 * 299.35094 * 12 5 4 37 37 H 0.97005 * 120.00041 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9957 1.3719 0.0000 4 6 3.5235 1.3290 0.0803 5 7 4.0501 0.5659 -1.0598 6 6 5.5190 0.5659 -1.0600 7 6 6.0214 1.9657 -1.3028 8 6 6.2727 2.8681 -0.3531 9 6 6.7308 4.0897 -0.8158 10 6 6.8429 4.1824 -2.1417 11 16 6.3587 2.6622 -2.8822 12 6 3.5234 -0.8060 -1.0600 13 6 1.9956 -0.7631 -1.1403 14 1 1.6936 -0.2818 -2.0705 15 6 1.4504 -2.1674 -1.1001 16 1 1.2868 -2.6564 -0.1512 17 6 1.1603 -2.8282 -2.2750 18 7 1.4671 -2.2803 -3.4305 19 14 0.3316 -4.5015 -2.2255 20 1 -1.1426 -4.3247 -2.2513 21 1 0.7553 -5.2989 -3.4044 22 1 0.7232 -5.2112 -0.9812 23 1 -0.3634 0.4224 -0.9368 24 1 -0.3633 0.6001 0.8342 25 1 -0.3634 -1.0225 0.1026 26 1 1.6938 1.8774 -0.9173 27 1 1.6011 1.9128 0.8601 28 1 3.9178 2.3447 0.0513 29 1 3.8254 0.8477 1.0105 30 1 5.8824 0.2117 -0.0953 31 1 5.8823 -0.0925 -1.8490 32 1 6.1321 2.6605 0.6973 33 1 6.9752 4.9072 -0.1536 34 1 7.1797 5.0569 -2.6785 35 1 3.9176 -1.3469 -1.9203 36 1 3.8253 -1.3115 -0.1427 37 1 1.2627 -2.7450 -4.2571 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259889448.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:46:15 Heat of formation + Delta-G solvation = 30.636534 kcal Electronic energy + Delta-G solvation = -18366.639016 eV Core-core repulsion = 15655.902274 eV Total energy + Delta-G solvation = -2710.736741 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.26961 -38.62799 -36.34914 -34.77073 -31.82470 -31.58668 -28.99257 -27.03608 -26.34387 -24.15185 -23.96912 -22.80214 -20.54996 -19.95177 -18.61326 -17.90482 -17.06991 -16.52878 -16.32113 -15.87951 -15.58759 -15.29005 -15.04733 -14.93083 -14.11258 -13.70557 -13.59038 -13.50142 -13.28285 -13.06387 -12.80771 -12.74193 -12.51914 -12.46654 -12.21902 -12.03286 -11.73693 -11.55644 -11.47102 -11.02622 -10.57665 -9.61460 -9.34980 -9.18685 -8.93578 -8.15776 -6.28165 0.13166 0.79110 1.22132 1.41406 1.42284 1.53187 1.88571 2.40551 3.02178 3.23997 3.47288 3.84992 4.16460 4.19660 4.29177 4.36060 4.45125 4.54538 4.67508 4.70541 4.73844 4.74819 4.80588 4.84841 4.96536 5.03423 5.18868 5.25563 5.37658 5.42815 5.55191 5.65266 5.70568 5.99993 6.15444 6.26716 6.39662 6.75302 6.94567 7.42625 8.91708 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.028255 B = 0.005170 C = 0.004671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.739236 B = 5414.085392 C = 5992.728016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.051 3.949 2 N -0.552 5.552 3 C 0.056 3.944 4 C 0.068 3.932 5 N -0.551 5.551 6 C 0.125 3.875 7 C -0.174 4.174 8 C -0.138 4.138 9 C -0.137 4.137 10 C -0.214 4.214 11 S 0.075 5.925 12 C 0.095 3.905 13 C 0.217 3.783 14 H -0.010 1.010 15 C -0.518 4.518 16 H 0.056 0.944 17 C 0.017 3.983 18 N -0.921 5.921 19 Si 0.958 3.042 20 H -0.274 1.274 21 H -0.284 1.284 22 H -0.265 1.265 23 H -0.005 1.005 24 H 0.077 0.923 25 H 0.058 0.942 26 H 0.011 0.989 27 H 0.093 0.907 28 H 0.091 0.909 29 H 0.037 0.963 30 H 0.059 0.941 31 H 0.070 0.930 32 H 0.150 0.850 33 H 0.166 0.834 34 H 0.187 0.813 35 H 0.044 0.956 36 H 0.019 0.981 37 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.213 11.779 5.716 16.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 N -0.277 5.277 3 C -0.073 4.073 4 C -0.060 4.060 5 N -0.276 5.276 6 C -0.004 4.004 7 C -0.291 4.291 8 C -0.169 4.169 9 C -0.167 4.167 10 C -0.350 4.350 11 S 0.338 5.662 12 C -0.033 4.033 13 C 0.109 3.891 14 H 0.008 0.992 15 C -0.557 4.557 16 H 0.074 0.926 17 C -0.183 4.183 18 N -0.560 5.560 19 Si 0.784 3.216 20 H -0.200 1.200 21 H -0.210 1.210 22 H -0.190 1.190 23 H 0.014 0.986 24 H 0.095 0.905 25 H 0.077 0.923 26 H 0.029 0.971 27 H 0.112 0.888 28 H 0.109 0.891 29 H 0.056 0.944 30 H 0.077 0.923 31 H 0.089 0.911 32 H 0.167 0.833 33 H 0.183 0.817 34 H 0.204 0.796 35 H 0.063 0.937 36 H 0.037 0.963 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 9.122 11.223 4.027 15.013 hybrid contribution -0.477 -0.576 0.797 1.093 sum 8.646 10.647 4.824 14.539 Atomic orbital electron populations 1.22024 0.87798 1.01625 0.98291 1.62326 1.08016 1.12268 1.45125 1.22181 0.95081 0.90259 0.99761 1.22113 0.94154 0.98612 0.91073 1.62221 1.06457 1.15117 1.43794 1.20434 0.87622 0.91325 1.01013 1.24338 1.08264 1.00390 0.96141 1.20388 1.02631 0.93238 1.00681 1.20403 1.02513 0.98607 0.95220 1.25950 1.09235 1.01524 0.98286 1.84569 1.64058 1.07808 1.09723 1.22022 0.96828 0.86690 0.97765 1.19160 0.90336 0.92635 0.86946 0.99213 1.21202 1.42931 0.99187 0.92336 0.92613 1.25785 0.95803 1.01643 0.95030 1.70117 1.47652 1.40286 0.97972 0.85552 0.78840 0.79487 0.77770 1.20000 1.21010 1.18966 0.98592 0.90458 0.92276 0.97075 0.88833 0.89102 0.94433 0.92311 0.91147 0.83276 0.81663 0.79598 0.93705 0.96257 0.92839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 2.11 9.24 127.69 1.18 3.29 16 2 N -0.55 -24.52 4.78 -900.95 -4.30 -28.83 16 3 C 0.06 2.08 5.62 86.31 0.48 2.56 16 4 C 0.07 2.35 5.35 86.31 0.46 2.81 16 5 N -0.55 -21.80 4.70 -900.34 -4.23 -26.03 16 6 C 0.12 4.11 5.46 85.56 0.47 4.57 16 7 C -0.17 -4.95 5.45 24.59 0.13 -4.81 16 8 C -0.14 -3.23 8.50 21.22 0.18 -3.05 16 9 C -0.14 -2.71 10.18 21.22 0.22 -2.49 16 10 C -0.21 -4.39 11.23 66.72 0.75 -3.65 16 11 S 0.08 2.04 23.33 -56.49 -1.32 0.72 16 12 C 0.10 4.50 4.87 86.31 0.42 4.92 16 13 C 0.22 11.26 2.03 44.17 0.09 11.35 16 14 H -0.01 -0.61 7.39 -2.39 -0.02 -0.63 16 15 C -0.52 -28.62 6.98 25.60 0.18 -28.44 16 16 H 0.06 3.09 7.82 -2.91 -0.02 3.07 16 17 C 0.02 0.96 5.45 84.66 0.46 1.42 16 18 N -0.92 -54.54 12.85 21.45 0.28 -54.27 16 19 Si 0.96 43.67 29.54 68.60 2.03 45.70 16 20 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 21 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 22 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 23 H 0.00 -0.20 8.14 -2.38 -0.02 -0.22 16 24 H 0.08 2.56 8.10 -2.39 -0.02 2.54 16 25 H 0.06 2.60 7.07 -2.39 -0.02 2.58 16 26 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 27 H 0.09 2.87 8.11 -2.39 -0.02 2.85 16 28 H 0.09 2.72 6.11 -2.39 -0.01 2.71 16 29 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 30 H 0.06 1.77 8.12 -2.39 -0.02 1.75 16 31 H 0.07 2.43 8.03 -2.39 -0.02 2.41 16 32 H 0.15 3.02 8.05 -2.91 -0.02 3.00 16 33 H 0.17 2.24 8.06 -2.91 -0.02 2.21 16 34 H 0.19 2.69 8.06 -2.91 -0.02 2.67 16 35 H 0.04 2.33 8.07 -2.39 -0.02 2.31 16 36 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 37 H 0.26 14.75 8.31 -92.70 -0.77 13.98 16 Total: -1.00 -63.43 310.74 -1.49 -64.93 By element: Atomic # 1 Polarization: 8.25 SS G_CDS: 1.03 Total: 9.28 kcal Atomic # 6 Polarization: -16.53 SS G_CDS: 5.02 Total: -11.51 kcal Atomic # 7 Polarization: -100.86 SS G_CDS: -8.26 Total: -109.12 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.70 kcal Atomic # 16 Polarization: 2.04 SS G_CDS: -1.32 Total: 0.72 kcal Total: -63.43 -1.49 -64.93 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259889448.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.565 kcal (2) G-P(sol) polarization free energy of solvation -63.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.928 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds