Wall clock time and date at job start Mon Mar 30 2020 05:46:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46954 * 111.01374 * 2 1 4 4 C 1.53054 * 109.37872 * 183.16879 * 3 2 1 5 5 N 1.46952 * 109.36792 * 301.61181 * 4 3 2 6 6 C 1.46897 * 111.00367 * 183.18887 * 5 4 3 7 7 C 1.50704 * 109.46924 * 66.19908 * 6 5 4 8 8 C 1.33383 * 125.20111 * 89.72111 * 7 6 5 9 9 C 1.38425 * 114.92170 * 179.85760 * 8 7 6 10 10 C 1.33395 * 114.91936 * 0.42849 * 9 8 7 11 11 S 1.75881 * 125.20157 * 270.02364 * 7 6 5 12 12 C 1.46960 * 110.88079 * 59.31760 * 5 4 3 13 13 C 1.46951 * 111.00017 * 123.81472 * 2 1 3 14 14 H 1.09003 * 109.49190 * 296.79684 * 13 2 1 15 15 C 1.50699 * 109.49247 * 56.84346 * 13 2 1 16 16 H 1.08001 * 119.99618 * 24.92047 * 15 13 2 17 17 C 1.37874 * 120.00215 * 204.92517 * 15 13 2 18 18 N 1.31510 * 120.00016 * 357.83934 * 17 15 13 19 19 Si 1.86807 * 120.00058 * 177.84560 * 17 15 13 20 20 H 1.48496 * 109.46741 * 179.97438 * 19 17 15 21 21 H 1.48498 * 109.46464 * 299.99540 * 19 17 15 22 22 H 1.48496 * 109.47044 * 59.99518 * 19 17 15 23 23 H 1.09003 * 109.46820 * 290.59490 * 1 2 3 24 24 H 1.08994 * 109.47344 * 50.59321 * 1 2 3 25 25 H 1.09000 * 109.47386 * 170.59838 * 1 2 3 26 26 H 1.08995 * 109.47174 * 63.20606 * 3 2 1 27 27 H 1.08996 * 109.50909 * 303.15709 * 3 2 1 28 28 H 1.08997 * 109.48979 * 181.64014 * 4 3 2 29 29 H 1.09000 * 109.49014 * 61.58181 * 4 3 2 30 30 H 1.09001 * 109.47104 * 186.20052 * 6 5 4 31 31 H 1.08999 * 109.46684 * 306.20049 * 6 5 4 32 32 H 1.08005 * 122.54397 * 0.02562 * 8 7 6 33 33 H 1.07998 * 122.54485 * 180.20206 * 9 8 7 34 34 H 1.08000 * 125.20585 * 179.79142 * 10 9 8 35 35 H 1.08998 * 109.49246 * 180.71568 * 12 5 4 36 36 H 1.08995 * 109.48696 * 60.64775 * 12 5 4 37 37 H 0.97001 * 120.00122 * 354.45478 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9960 1.3718 0.0000 4 6 3.5239 1.3289 -0.0798 5 7 4.0502 0.5656 1.0603 6 6 5.5192 0.5656 1.0608 7 6 6.0214 1.9649 1.3078 8 6 6.2722 2.4912 2.5075 9 6 6.7303 3.7973 2.4873 10 6 6.8429 4.3346 1.2716 11 16 6.3592 3.1561 0.0587 12 6 3.5235 -0.8064 1.0600 13 6 1.9957 -0.7635 1.1398 14 1 1.6935 -0.2828 2.0703 15 6 1.4505 -2.1678 1.0994 16 1 1.1321 -2.5966 0.1606 17 6 1.3581 -2.9052 2.2607 18 7 1.7850 -2.3989 3.3968 19 14 0.6266 -4.6236 2.2202 20 1 0.6416 -5.2002 3.5886 21 1 -0.7723 -4.5545 1.7269 22 1 1.4296 -5.4822 1.3129 23 1 -0.3633 0.3615 0.9620 24 1 -0.3634 0.6523 -0.7940 25 1 -0.3634 -1.0138 -0.1679 26 1 1.6939 1.8771 0.9173 27 1 1.6020 1.9131 -0.8601 28 1 3.9182 2.3447 -0.0506 29 1 3.8261 0.8479 -1.0101 30 1 5.8822 -0.0950 1.8481 31 1 5.8827 0.2143 0.0952 32 1 6.1314 1.9392 3.4251 33 1 6.9744 4.3413 3.3877 34 1 7.1797 5.3395 1.0637 35 1 3.9175 -1.3474 1.9203 36 1 3.8257 -1.3116 0.1427 37 1 2.2376 -1.5410 3.4058 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259889452.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:46:21 Heat of formation + Delta-G solvation = 46.962445 kcal Electronic energy + Delta-G solvation = -18431.060346 eV Core-core repulsion = 15721.031549 eV Total energy + Delta-G solvation = -2710.028797 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -38.79731 -37.57916 -34.97512 -33.06780 -30.59944 -29.67471 -27.46358 -25.17856 -24.68805 -22.98007 -22.40670 -21.46460 -19.24676 -18.82137 -17.17861 -16.64490 -15.44309 -15.35356 -14.60766 -14.35558 -13.95295 -13.86362 -13.71572 -13.38874 -12.79679 -12.58513 -12.41064 -12.11263 -11.72747 -11.59712 -11.24634 -11.14535 -10.96564 -10.85032 -10.61199 -10.45160 -10.24432 -10.08228 -9.93327 -8.69377 -8.53781 -8.44147 -8.34824 -7.78640 -7.25537 -6.37778 -4.12174 1.06544 1.69627 2.06476 2.84181 3.43056 3.43629 3.63036 4.45482 4.55969 4.90384 4.95618 5.08151 5.33527 5.39769 5.59598 5.60064 5.67612 5.75898 5.84416 5.90151 6.14548 6.20379 6.21701 6.31881 6.39951 6.42692 6.51025 6.56208 6.60035 6.77632 6.99687 7.27614 7.50955 7.62145 7.87792 8.01883 8.37968 8.57983 8.85063 9.61348 10.98734 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.029523 B = 0.005165 C = 0.004686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.178404 B = 5419.880193 C = 5973.224906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.048 3.952 2 N -0.540 5.540 3 C 0.057 3.943 4 C 0.059 3.941 5 N -0.538 5.538 6 C 0.121 3.879 7 C -0.150 4.150 8 C -0.131 4.131 9 C -0.130 4.130 10 C -0.224 4.224 11 S 0.082 5.918 12 C 0.071 3.929 13 C 0.207 3.793 14 H 0.012 0.988 15 C -0.586 4.586 16 H 0.057 0.943 17 C 0.022 3.978 18 N -0.909 5.909 19 Si 1.068 2.932 20 H -0.283 1.283 21 H -0.288 1.288 22 H -0.287 1.287 23 H 0.013 0.987 24 H 0.040 0.960 25 H 0.075 0.925 26 H 0.028 0.972 27 H 0.063 0.937 28 H 0.069 0.931 29 H 0.033 0.967 30 H 0.091 0.909 31 H 0.039 0.961 32 H 0.141 0.859 33 H 0.137 0.863 34 H 0.159 0.841 35 H 0.071 0.929 36 H 0.029 0.971 37 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.226 10.668 -4.660 14.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 N -0.266 5.266 3 C -0.072 4.072 4 C -0.070 4.070 5 N -0.263 5.263 6 C -0.008 4.008 7 C -0.268 4.268 8 C -0.161 4.161 9 C -0.161 4.161 10 C -0.359 4.359 11 S 0.344 5.656 12 C -0.056 4.056 13 C 0.100 3.900 14 H 0.030 0.970 15 C -0.625 4.625 16 H 0.075 0.925 17 C -0.183 4.183 18 N -0.545 5.545 19 Si 0.896 3.104 20 H -0.208 1.208 21 H -0.214 1.214 22 H -0.214 1.214 23 H 0.031 0.969 24 H 0.059 0.941 25 H 0.093 0.907 26 H 0.047 0.953 27 H 0.081 0.919 28 H 0.088 0.912 29 H 0.051 0.949 30 H 0.110 0.890 31 H 0.058 0.942 32 H 0.159 0.841 33 H 0.154 0.846 34 H 0.177 0.823 35 H 0.090 0.910 36 H 0.047 0.953 37 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 7.703 9.400 -5.262 13.243 hybrid contribution 0.612 1.470 0.578 1.694 sum 8.315 10.870 -4.684 14.465 Atomic orbital electron populations 1.22041 0.88180 1.01948 0.97857 1.62220 1.07395 1.10590 1.46367 1.22051 0.93949 0.91812 0.99372 1.22174 0.95296 0.97801 0.91745 1.62374 1.04479 1.16956 1.42456 1.20560 0.89499 0.89871 1.00911 1.24504 1.06415 1.00237 0.95606 1.20141 1.02421 0.95407 0.98163 1.20179 1.02538 0.95499 0.97845 1.25540 1.10623 1.03574 0.96174 1.84244 1.64791 1.05278 1.11243 1.22581 0.98166 0.85092 0.99808 1.19435 0.89231 0.93991 0.87354 0.97028 1.21844 1.46033 0.98020 0.96650 0.92490 1.25836 0.95922 1.04517 0.92028 1.70770 1.36023 1.20473 1.27194 0.83557 0.76178 0.74786 0.75864 1.20840 1.21430 1.21392 0.96862 0.94072 0.90666 0.95336 0.91852 0.91228 0.94878 0.89047 0.94249 0.84147 0.84551 0.82293 0.91039 0.95286 0.91635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.00 9.19 60.07 0.55 1.55 16 2 N -0.54 -12.09 4.77 -236.13 -1.13 -13.22 16 3 C 0.06 1.11 5.61 -3.77 -0.02 1.08 16 4 C 0.06 1.07 5.40 -3.77 -0.02 1.05 16 5 N -0.54 -10.52 4.70 -235.91 -1.11 -11.62 16 6 C 0.12 2.00 5.46 -4.98 -0.03 1.97 16 7 C -0.15 -2.22 5.26 -36.00 -0.19 -2.41 16 8 C -0.13 -1.82 10.05 -41.21 -0.41 -2.23 16 9 C -0.13 -1.55 10.18 -41.21 -0.42 -1.97 16 10 C -0.22 -2.55 11.23 29.04 0.33 -2.22 16 11 S 0.08 1.05 21.82 -107.50 -2.35 -1.30 16 12 C 0.07 1.62 4.79 -3.76 -0.02 1.60 16 13 C 0.21 5.20 1.56 -68.81 -0.11 5.09 16 14 H 0.01 0.34 6.96 -51.93 -0.36 -0.02 16 15 C -0.59 -15.98 7.20 -34.44 -0.25 -16.23 16 16 H 0.06 1.58 7.52 -52.49 -0.39 1.19 16 17 C 0.02 0.61 5.46 -17.82 -0.10 0.52 16 18 N -0.91 -26.69 13.59 55.43 0.75 -25.94 16 19 Si 1.07 24.60 29.90 -169.99 -5.08 19.52 16 20 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 21 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 22 H -0.29 -6.36 7.11 56.52 0.40 -5.96 16 23 H 0.01 0.28 8.13 -51.93 -0.42 -0.14 16 24 H 0.04 0.72 8.04 -51.93 -0.42 0.30 16 25 H 0.07 1.64 7.03 -51.93 -0.37 1.28 16 26 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.06 1.07 8.08 -51.93 -0.42 0.65 16 28 H 0.07 1.16 5.89 -51.93 -0.31 0.85 16 29 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.09 1.47 8.03 -51.93 -0.42 1.05 16 31 H 0.04 0.63 8.12 -51.93 -0.42 0.21 16 32 H 0.14 1.89 8.06 -52.48 -0.42 1.47 16 33 H 0.14 1.31 8.06 -52.49 -0.42 0.89 16 34 H 0.16 1.39 8.06 -52.49 -0.42 0.96 16 35 H 0.07 1.74 7.60 -51.93 -0.39 1.34 16 36 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.27 8.05 6.30 -40.82 -0.26 7.79 16 LS Contribution 307.77 15.07 4.64 4.64 Total: -1.00 -29.33 307.77 -10.47 -39.79 By element: Atomic # 1 Polarization: 5.84 SS G_CDS: -5.51 Total: 0.33 kcal Atomic # 6 Polarization: -11.51 SS G_CDS: -0.68 Total: -12.20 kcal Atomic # 7 Polarization: -49.30 SS G_CDS: -1.48 Total: -50.78 kcal Atomic # 14 Polarization: 24.60 SS G_CDS: -5.08 Total: 19.52 kcal Atomic # 16 Polarization: 1.05 SS G_CDS: -2.35 Total: -1.30 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -29.33 -10.47 -39.79 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259889452.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.756 kcal (2) G-P(sol) polarization free energy of solvation -29.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.793 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds