Wall clock time and date at job start Mon Mar 30 2020 05:09:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.33390 * 125.19870 * 2 1 4 4 C 1.38426 * 114.91834 * 179.75165 * 3 2 1 5 5 C 1.33391 * 114.92244 * 0.42689 * 4 3 2 6 6 C 1.50703 * 125.20601 * 179.85876 * 5 4 3 7 7 H 1.08998 * 110.36256 * 18.82771 * 6 5 4 8 8 C 1.54380 * 110.41170 * 256.35081 * 6 5 4 9 9 H 1.09000 * 110.32063 * 336.26422 * 8 6 5 10 10 N 1.46894 * 110.32502 * 98.47096 * 8 6 5 11 11 C 1.54263 * 105.05880 * 217.36789 * 8 6 5 12 12 H 1.08995 * 110.40665 * 241.06014 * 11 8 6 13 13 C 1.50698 * 110.32380 * 118.89364 * 11 8 6 14 14 H 1.08005 * 119.99819 * 2.91227 * 13 11 8 15 15 C 1.37875 * 120.00046 * 182.90568 * 13 11 8 16 16 N 1.31511 * 120.00192 * 0.02562 * 15 13 11 17 17 Si 1.86798 * 119.99979 * 180.02562 * 15 13 11 18 18 H 1.48506 * 109.47297 * 180.02562 * 17 15 13 19 19 H 1.48503 * 109.47261 * 60.00310 * 17 15 13 20 20 H 1.48500 * 109.47454 * 300.00304 * 17 15 13 21 21 C 1.54383 * 105.05793 * 359.97438 * 11 8 6 22 22 N 1.48555 * 104.59902 * 23.85465 * 21 11 8 23 23 C 1.46896 * 111.00422 * 200.95797 * 22 21 11 24 24 S 1.75882 * 125.20638 * 179.97438 * 2 1 3 25 25 H 1.09000 * 109.46658 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.46851 * 299.99625 * 1 2 3 27 27 H 1.08999 * 109.47264 * 60.00039 * 1 2 3 28 28 H 1.08000 * 122.54091 * 359.97438 * 3 2 1 29 29 H 1.08001 * 122.54114 * 180.27960 * 4 3 2 30 30 H 1.00899 * 111.00188 * 177.08645 * 10 8 6 31 31 H 1.00906 * 110.99898 * 301.04692 * 10 8 6 32 32 H 0.97001 * 119.99934 * 359.97438 * 16 15 13 33 33 H 1.09007 * 110.40877 * 142.63312 * 21 11 8 34 34 H 1.08993 * 110.41083 * 265.07072 * 21 11 8 35 35 H 1.09000 * 109.46837 * 59.87264 * 23 22 21 36 36 H 1.08998 * 109.47464 * 179.86866 * 23 22 21 37 37 H 1.08998 * 109.46802 * 299.87257 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2759 1.0900 0.0000 4 6 3.6380 0.8430 0.0054 5 6 3.9752 -0.4476 0.0008 6 6 5.3862 -0.9769 0.0021 7 1 6.0802 -0.2060 0.3369 8 6 5.7739 -1.4798 -1.4050 9 1 4.8809 -1.7406 -1.9731 10 7 6.5516 -0.4565 -2.1162 11 6 6.6375 -2.7340 -1.1586 12 1 7.6386 -2.5921 -1.5655 13 6 5.9891 -3.9458 -1.7768 14 1 5.0735 -3.8401 -2.3400 15 6 6.5646 -5.1892 -1.6236 16 7 7.6792 -5.3180 -0.9376 17 14 5.7612 -6.6912 -2.3905 18 1 6.5705 -7.8974 -2.0818 19 1 5.6806 -6.5121 -3.8625 20 1 4.3935 -6.8581 -1.8366 21 6 6.6995 -2.8830 0.3768 22 7 5.4889 -2.1776 0.8705 23 6 5.6403 -1.7961 2.2810 24 16 2.5211 -1.4371 0.0006 25 1 -0.3632 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.8668 2.0895 -0.0004 29 1 4.3720 1.6351 0.0105 30 1 6.8510 -0.7925 -3.0193 31 1 6.0259 0.4003 -2.2052 32 1 8.0966 -4.5380 -0.5397 33 1 6.6674 -3.9356 0.6582 34 1 7.6006 -2.4112 0.7684 35 1 6.5004 -1.1351 2.3882 36 1 4.7411 -1.2795 2.6163 37 1 5.7921 -2.6907 2.8850 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259909673.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:09:51 Heat of formation + Delta-G solvation = 34.085156 kcal Electronic energy + Delta-G solvation = -18560.528860 eV Core-core repulsion = 15849.941663 eV Total energy + Delta-G solvation = -2710.587198 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -38.95629 -37.31864 -33.70334 -33.17925 -31.82156 -29.01588 -28.35508 -25.39526 -24.78014 -23.20533 -22.58870 -20.31787 -19.54746 -18.62743 -17.08713 -16.32404 -15.31592 -15.04833 -14.71450 -13.94708 -13.83273 -13.74862 -13.57606 -13.52686 -12.97171 -12.66167 -12.20395 -12.10773 -12.04974 -11.73023 -11.29903 -11.09407 -10.90935 -10.74152 -10.55568 -10.29002 -10.23981 -10.10079 -9.78786 -8.53411 -8.34302 -8.20630 -8.09106 -8.04268 -7.81380 -6.31839 -4.03552 1.29261 1.97995 2.46561 2.96877 3.45615 3.48197 3.65890 4.49825 4.56043 5.00795 5.18910 5.30185 5.31951 5.34609 5.51382 5.51806 5.63367 5.70486 5.78599 5.82589 5.91585 5.97142 6.17801 6.23023 6.34248 6.38436 6.51329 6.57166 6.75393 6.88337 7.15225 7.28704 7.47640 7.69102 7.82838 7.96449 8.28107 8.43462 8.88083 9.65612 11.05251 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.020931 B = 0.006701 C = 0.006038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.393074 B = 4177.217758 C = 4636.487122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C -0.217 4.217 3 C -0.141 4.141 4 C -0.158 4.158 5 C -0.145 4.145 6 C 0.131 3.869 7 H 0.067 0.933 8 C 0.105 3.895 9 H 0.044 0.956 10 N -0.845 5.845 11 C 0.041 3.959 12 H 0.034 0.966 13 C -0.579 4.579 14 H 0.048 0.952 15 C 0.020 3.980 16 N -0.913 5.913 17 Si 1.065 2.935 18 H -0.283 1.283 19 H -0.289 1.289 20 H -0.287 1.287 21 C 0.040 3.960 22 N -0.498 5.498 23 C 0.016 3.984 24 S 0.164 5.836 25 H 0.064 0.936 26 H 0.069 0.931 27 H 0.070 0.930 28 H 0.129 0.871 29 H 0.131 0.869 30 H 0.343 0.657 31 H 0.326 0.674 32 H 0.270 0.730 33 H 0.093 0.907 34 H 0.015 0.985 35 H 0.020 0.980 36 H 0.059 0.941 37 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.762 11.089 2.581 14.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.334 4.334 3 C -0.172 4.172 4 C -0.188 4.188 5 C -0.264 4.264 6 C 0.021 3.979 7 H 0.085 0.915 8 C -0.007 4.007 9 H 0.062 0.938 10 N -0.374 5.374 11 C 0.022 3.978 12 H 0.052 0.948 13 C -0.618 4.618 14 H 0.066 0.934 15 C -0.183 4.183 16 N -0.550 5.550 17 Si 0.894 3.106 18 H -0.208 1.208 19 H -0.216 1.216 20 H -0.214 1.214 21 C -0.088 4.088 22 N -0.222 5.222 23 C -0.133 4.133 24 S 0.430 5.570 25 H 0.083 0.917 26 H 0.088 0.912 27 H 0.088 0.912 28 H 0.146 0.854 29 H 0.149 0.851 30 H 0.156 0.844 31 H 0.137 0.863 32 H 0.082 0.918 33 H 0.111 0.889 34 H 0.033 0.967 35 H 0.039 0.961 36 H 0.077 0.923 37 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -9.851 7.451 2.998 12.710 hybrid contribution 0.133 3.827 -0.315 3.842 sum -9.718 11.277 2.683 15.126 Atomic orbital electron populations 1.20229 0.88493 1.02510 1.02228 1.24712 0.99982 0.97696 1.11050 1.19853 0.92803 0.98747 1.05778 1.19952 0.96033 0.95677 1.07150 1.24570 0.98801 0.95992 1.07034 1.21116 0.88706 0.92720 0.95406 0.91522 1.22247 0.95501 0.91906 0.91046 0.93770 1.58891 1.45835 1.06861 1.25840 1.19603 0.95466 0.91827 0.90906 0.94836 1.21905 1.11073 0.92950 1.35841 0.93388 1.25715 0.95782 1.00882 0.95950 1.70815 1.17753 1.34084 1.32358 0.83595 0.75502 0.75765 0.75781 1.20845 1.21606 1.21392 1.23472 0.87424 0.99330 0.98569 1.65263 1.38976 1.17021 1.00957 1.22477 0.99568 1.00120 0.91115 1.84720 0.94783 1.06752 1.70794 0.91709 0.91189 0.91170 0.85352 0.85120 0.84361 0.86317 0.91819 0.88863 0.96651 0.96107 0.92251 0.91477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.80 10.38 36.01 0.37 -0.42 16 2 C -0.22 -3.02 6.51 -36.00 -0.23 -3.25 16 3 C -0.14 -1.92 10.05 -41.21 -0.41 -2.34 16 4 C -0.16 -2.37 10.05 -41.21 -0.41 -2.78 16 5 C -0.15 -2.51 5.16 -36.00 -0.19 -2.70 16 6 C 0.13 2.52 2.39 -67.23 -0.16 2.36 16 7 H 0.07 1.28 7.81 -51.93 -0.41 0.87 16 8 C 0.10 2.19 3.37 -66.33 -0.22 1.97 16 9 H 0.04 1.00 7.13 -51.93 -0.37 0.63 16 10 N -0.84 -15.09 9.14 -3.50 -0.03 -15.12 16 11 C 0.04 1.02 2.42 -90.39 -0.22 0.80 16 12 H 0.03 0.90 7.85 -51.93 -0.41 0.49 16 13 C -0.58 -15.88 8.55 -34.44 -0.29 -16.17 16 14 H 0.05 1.34 7.36 -52.48 -0.39 0.95 16 15 C 0.02 0.57 5.09 -17.82 -0.09 0.48 16 16 N -0.91 -26.81 12.91 55.43 0.72 -26.09 16 17 Si 1.06 25.10 29.90 -169.99 -5.08 20.02 16 18 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 19 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 20 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 21 C 0.04 0.93 4.89 -2.18 -0.01 0.92 16 22 N -0.50 -10.33 5.12 -231.75 -1.19 -11.52 16 23 C 0.02 0.29 9.41 60.06 0.57 0.85 16 24 S 0.16 2.77 23.08 -107.50 -2.48 0.29 16 25 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.13 1.44 8.06 -52.49 -0.42 1.01 16 29 H 0.13 1.75 8.06 -52.49 -0.42 1.33 16 30 H 0.34 5.96 9.06 -39.29 -0.36 5.61 16 31 H 0.33 5.02 9.05 -39.29 -0.36 4.66 16 32 H 0.27 7.86 5.98 -40.82 -0.24 7.62 16 33 H 0.09 2.46 6.27 -51.92 -0.33 2.14 16 34 H 0.02 0.35 7.97 -51.93 -0.41 -0.07 16 35 H 0.02 0.34 7.97 -51.93 -0.41 -0.07 16 36 H 0.06 0.96 8.04 -51.93 -0.42 0.54 16 37 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 LS Contribution 312.93 15.07 4.72 4.72 Total: -1.00 -29.42 312.93 -10.09 -39.51 By element: Atomic # 1 Polarization: 13.91 SS G_CDS: -5.43 Total: 8.48 kcal Atomic # 6 Polarization: -18.98 SS G_CDS: -1.31 Total: -20.29 kcal Atomic # 7 Polarization: -52.23 SS G_CDS: -0.50 Total: -52.73 kcal Atomic # 14 Polarization: 25.10 SS G_CDS: -5.08 Total: 20.02 kcal Atomic # 16 Polarization: 2.77 SS G_CDS: -2.48 Total: 0.29 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -29.42 -10.09 -39.51 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259909673.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.594 kcal (2) G-P(sol) polarization free energy of solvation -29.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.509 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds