Wall clock time and date at job start Mon Mar 30 2020 05:09:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.33390 * 125.19870 * 2 1 4 4 C 1.38426 * 114.91834 * 179.75165 * 3 2 1 5 5 C 1.33391 * 114.92244 * 0.42689 * 4 3 2 6 6 C 1.50703 * 125.20601 * 179.85876 * 5 4 3 7 7 H 1.08998 * 110.36256 * 18.82771 * 6 5 4 8 8 C 1.54380 * 110.41170 * 256.35081 * 6 5 4 9 9 H 1.09000 * 110.32063 * 336.26422 * 8 6 5 10 10 N 1.46894 * 110.32502 * 98.47096 * 8 6 5 11 11 C 1.54263 * 105.05880 * 217.36789 * 8 6 5 12 12 H 1.08995 * 110.40665 * 241.06014 * 11 8 6 13 13 C 1.50698 * 110.32380 * 118.89364 * 11 8 6 14 14 H 1.08005 * 119.99819 * 2.91227 * 13 11 8 15 15 C 1.37875 * 120.00046 * 182.90568 * 13 11 8 16 16 N 1.31511 * 120.00192 * 0.02562 * 15 13 11 17 17 Si 1.86798 * 119.99979 * 180.02562 * 15 13 11 18 18 H 1.48506 * 109.47297 * 180.02562 * 17 15 13 19 19 H 1.48503 * 109.47261 * 60.00310 * 17 15 13 20 20 H 1.48500 * 109.47454 * 300.00304 * 17 15 13 21 21 C 1.54383 * 105.05793 * 359.97438 * 11 8 6 22 22 N 1.48555 * 104.59902 * 23.85465 * 21 11 8 23 23 C 1.46896 * 111.00422 * 200.95797 * 22 21 11 24 24 S 1.75882 * 125.20638 * 179.97438 * 2 1 3 25 25 H 1.09000 * 109.46658 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.46851 * 299.99625 * 1 2 3 27 27 H 1.08999 * 109.47264 * 60.00039 * 1 2 3 28 28 H 1.08000 * 122.54091 * 359.97438 * 3 2 1 29 29 H 1.08001 * 122.54114 * 180.27960 * 4 3 2 30 30 H 1.00899 * 111.00188 * 177.08645 * 10 8 6 31 31 H 1.00906 * 110.99898 * 301.04692 * 10 8 6 32 32 H 0.97001 * 119.99934 * 359.97438 * 16 15 13 33 33 H 1.09007 * 110.40877 * 142.63312 * 21 11 8 34 34 H 1.08993 * 110.41083 * 265.07072 * 21 11 8 35 35 H 1.09000 * 109.46837 * 59.87264 * 23 22 21 36 36 H 1.08998 * 109.47464 * 179.86866 * 23 22 21 37 37 H 1.08998 * 109.46802 * 299.87257 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2759 1.0900 0.0000 4 6 3.6380 0.8430 0.0054 5 6 3.9752 -0.4476 0.0008 6 6 5.3862 -0.9769 0.0021 7 1 6.0802 -0.2060 0.3369 8 6 5.7739 -1.4798 -1.4050 9 1 4.8809 -1.7406 -1.9731 10 7 6.5516 -0.4565 -2.1162 11 6 6.6375 -2.7340 -1.1586 12 1 7.6386 -2.5921 -1.5655 13 6 5.9891 -3.9458 -1.7768 14 1 5.0735 -3.8401 -2.3400 15 6 6.5646 -5.1892 -1.6236 16 7 7.6792 -5.3180 -0.9376 17 14 5.7612 -6.6912 -2.3905 18 1 6.5705 -7.8974 -2.0818 19 1 5.6806 -6.5121 -3.8625 20 1 4.3935 -6.8581 -1.8366 21 6 6.6995 -2.8830 0.3768 22 7 5.4889 -2.1776 0.8705 23 6 5.6403 -1.7961 2.2810 24 16 2.5211 -1.4371 0.0006 25 1 -0.3632 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.8668 2.0895 -0.0004 29 1 4.3720 1.6351 0.0105 30 1 6.8510 -0.7925 -3.0193 31 1 6.0259 0.4003 -2.2052 32 1 8.0966 -4.5380 -0.5397 33 1 6.6674 -3.9356 0.6582 34 1 7.6006 -2.4112 0.7684 35 1 6.5004 -1.1351 2.3882 36 1 4.7411 -1.2795 2.6163 37 1 5.7921 -2.6907 2.8850 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259909673.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:09:50 Heat of formation + Delta-G solvation = 13.911361 kcal Electronic energy + Delta-G solvation = -18561.403662 eV Core-core repulsion = 15849.941663 eV Total energy + Delta-G solvation = -2711.461999 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.55743 -38.54520 -35.52426 -34.90228 -33.02149 -30.80655 -29.64076 -27.24694 -26.10632 -25.03475 -23.74936 -21.96416 -21.29762 -19.86203 -19.03728 -17.65037 -16.85593 -16.43898 -16.31871 -15.62877 -15.36753 -15.26076 -15.08941 -14.80682 -14.24597 -13.97972 -13.92166 -13.47453 -13.24491 -13.03229 -12.89710 -12.62083 -12.51187 -12.28422 -12.22851 -12.11386 -11.96681 -11.58386 -11.41075 -10.60208 -10.44934 -9.71483 -9.48992 -9.30831 -9.28520 -8.55096 -6.26971 0.11892 0.78059 1.28627 1.52869 1.60392 1.79165 1.84983 2.58331 2.97211 3.22614 3.68072 3.78589 3.97871 4.04436 4.12728 4.28601 4.34257 4.45237 4.46019 4.59780 4.66467 4.77496 4.78458 4.81808 4.86113 5.00814 5.12545 5.24405 5.27537 5.37428 5.39955 5.66890 5.82486 5.98994 6.09363 6.24805 6.32809 6.55689 6.71013 7.49494 8.82657 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.020931 B = 0.006701 C = 0.006038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.393074 B = 4177.217758 C = 4636.487122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C -0.195 4.195 3 C -0.147 4.147 4 C -0.137 4.137 5 C -0.174 4.174 6 C 0.144 3.856 7 H 0.070 0.930 8 C 0.116 3.884 9 H 0.023 0.977 10 N -0.838 5.838 11 C 0.035 3.965 12 H 0.007 0.993 13 C -0.587 4.587 14 H 0.037 0.963 15 C -0.026 4.026 16 N -0.935 5.935 17 Si 1.107 2.893 18 H -0.284 1.284 19 H -0.272 1.272 20 H -0.277 1.277 21 C 0.053 3.947 22 N -0.512 5.512 23 C 0.019 3.981 24 S 0.096 5.904 25 H 0.064 0.936 26 H 0.091 0.909 27 H 0.089 0.911 28 H 0.163 0.837 29 H 0.151 0.849 30 H 0.346 0.654 31 H 0.344 0.656 32 H 0.261 0.739 33 H 0.059 0.941 34 H 0.016 0.984 35 H 0.031 0.969 36 H 0.075 0.925 37 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.719 13.212 2.674 17.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.313 4.313 3 C -0.176 4.176 4 C -0.168 4.168 5 C -0.292 4.292 6 C 0.034 3.966 7 H 0.088 0.912 8 C 0.003 3.997 9 H 0.041 0.959 10 N -0.369 5.369 11 C 0.015 3.985 12 H 0.025 0.975 13 C -0.625 4.625 14 H 0.055 0.945 15 C -0.224 4.224 16 N -0.573 5.573 17 Si 0.930 3.070 18 H -0.209 1.209 19 H -0.198 1.198 20 H -0.202 1.202 21 C -0.076 4.076 22 N -0.236 5.236 23 C -0.129 4.129 24 S 0.361 5.639 25 H 0.083 0.917 26 H 0.110 0.890 27 H 0.107 0.893 28 H 0.180 0.820 29 H 0.169 0.831 30 H 0.159 0.841 31 H 0.157 0.843 32 H 0.071 0.929 33 H 0.077 0.923 34 H 0.034 0.966 35 H 0.049 0.951 36 H 0.093 0.907 37 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -11.815 9.616 3.089 15.543 hybrid contribution 0.679 3.286 -0.339 3.373 sum -11.136 12.902 2.750 17.264 Atomic orbital electron populations 1.20392 0.85930 1.03222 1.04109 1.25101 1.01361 0.95735 1.09098 1.20185 0.92042 1.00155 1.05253 1.20286 0.97337 0.95042 1.04167 1.24282 0.97363 0.96717 1.10811 1.20926 0.90396 0.91845 0.93459 0.91229 1.21946 0.93864 0.91291 0.92558 0.95926 1.58801 1.45404 1.06820 1.25902 1.19531 0.94425 0.93004 0.91508 0.97534 1.22154 1.10581 0.94232 1.35521 0.94457 1.26991 0.95696 1.03879 0.95862 1.70909 1.18901 1.33703 1.33820 0.83052 0.75088 0.72779 0.76102 1.20907 1.19752 1.20241 1.23087 0.88864 0.97840 0.97760 1.65191 1.37205 1.18352 1.02849 1.22499 1.00743 1.00544 0.89153 1.84923 0.96670 1.09903 1.72422 0.91704 0.89048 0.89259 0.81965 0.83147 0.84116 0.84288 0.92870 0.92295 0.96573 0.95093 0.90665 0.91390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.35 10.38 71.24 0.74 -0.61 16 2 C -0.20 -4.86 6.51 24.59 0.16 -4.70 16 3 C -0.15 -3.41 10.05 21.22 0.21 -3.20 16 4 C -0.14 -3.69 10.05 21.22 0.21 -3.47 16 5 C -0.17 -5.76 5.16 24.59 0.13 -5.63 16 6 C 0.14 5.45 2.39 44.32 0.11 5.56 16 7 H 0.07 2.57 7.81 -2.39 -0.02 2.55 16 8 C 0.12 4.89 3.37 45.81 0.15 5.04 16 9 H 0.02 1.06 7.13 -2.39 -0.02 1.04 16 10 N -0.84 -29.50 9.14 -164.97 -1.51 -31.01 16 11 C 0.03 1.77 2.42 -10.64 -0.03 1.74 16 12 H 0.01 0.37 7.85 -2.39 -0.02 0.35 16 13 C -0.59 -33.20 8.55 25.60 0.22 -32.98 16 14 H 0.04 2.14 7.36 -2.91 -0.02 2.12 16 15 C -0.03 -1.49 5.09 84.65 0.43 -1.06 16 16 N -0.94 -56.71 12.91 21.45 0.28 -56.43 16 17 Si 1.11 51.22 29.90 68.60 2.05 53.27 16 18 H -0.28 -13.08 7.11 99.48 0.71 -12.38 16 19 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 20 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 21 C 0.05 2.57 4.89 86.45 0.42 2.99 16 22 N -0.51 -21.40 5.12 -887.11 -4.55 -25.95 16 23 C 0.02 0.66 9.41 127.69 1.20 1.86 16 24 S 0.10 3.18 23.08 -56.49 -1.30 1.88 16 25 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 26 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 27 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 28 H 0.16 2.73 8.06 -2.91 -0.02 2.71 16 29 H 0.15 3.41 8.06 -2.91 -0.02 3.39 16 30 H 0.35 11.97 9.06 -89.69 -0.81 11.16 16 31 H 0.34 10.02 9.05 -89.69 -0.81 9.21 16 32 H 0.26 15.87 5.98 -92.71 -0.55 15.31 16 33 H 0.06 3.26 6.27 -2.38 -0.01 3.25 16 34 H 0.02 0.76 7.97 -2.39 -0.02 0.74 16 35 H 0.03 0.99 7.97 -2.39 -0.02 0.97 16 36 H 0.07 2.33 8.04 -2.39 -0.02 2.31 16 37 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 Total: -1.00 -65.26 312.93 -1.40 -66.65 By element: Atomic # 1 Polarization: 26.37 SS G_CDS: -0.33 Total: 26.04 kcal Atomic # 6 Polarization: -38.42 SS G_CDS: 3.96 Total: -34.46 kcal Atomic # 7 Polarization: -107.61 SS G_CDS: -5.78 Total: -113.38 kcal Atomic # 14 Polarization: 51.22 SS G_CDS: 2.05 Total: 53.27 kcal Atomic # 16 Polarization: 3.18 SS G_CDS: -1.30 Total: 1.88 kcal Total: -65.26 -1.40 -66.65 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259909673.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.564 kcal (2) G-P(sol) polarization free energy of solvation -65.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.653 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds