Wall clock time and date at job start Mon Mar 30 2020 05:09:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.33391 * 125.20472 * 2 1 4 4 C 1.38424 * 114.92317 * 179.97438 * 3 2 1 5 5 C 1.33397 * 114.92099 * 359.97438 * 4 3 2 6 6 C 1.50696 * 125.20390 * 179.97438 * 5 4 3 7 7 H 1.08996 * 110.36572 * 19.10450 * 6 5 4 8 8 C 1.54381 * 110.51153 * 256.68395 * 6 5 4 9 9 H 1.09005 * 110.32006 * 98.42230 * 8 6 5 10 10 N 1.46897 * 110.32357 * 336.21576 * 8 6 5 11 11 C 1.54261 * 105.06114 * 217.31862 * 8 6 5 12 12 H 1.08999 * 110.40917 * 118.93993 * 11 8 6 13 13 C 1.50694 * 110.32327 * 241.10548 * 11 8 6 14 14 H 1.08000 * 120.00563 * 357.09186 * 13 11 8 15 15 C 1.37885 * 119.99902 * 177.09023 * 13 11 8 16 16 N 1.31516 * 119.99913 * 0.02562 * 15 13 11 17 17 Si 1.86805 * 119.99854 * 179.72538 * 15 13 11 18 18 H 1.48504 * 109.47032 * 0.02562 * 17 15 13 19 19 H 1.48497 * 109.46816 * 120.00323 * 17 15 13 20 20 H 1.48495 * 109.46630 * 240.00111 * 17 15 13 21 21 C 1.54383 * 105.06068 * 0.02562 * 11 8 6 22 22 N 1.48559 * 110.41051 * 141.45574 * 6 5 4 23 23 C 1.46903 * 111.00026 * 277.93752 * 22 6 5 24 24 S 1.75884 * 109.59024 * 0.24414 * 5 4 3 25 25 H 1.09008 * 109.47097 * 90.00064 * 1 2 3 26 26 H 1.08998 * 109.47459 * 210.00251 * 1 2 3 27 27 H 1.08999 * 109.47370 * 330.00846 * 1 2 3 28 28 H 1.07991 * 122.53648 * 359.93921 * 3 2 1 29 29 H 1.07997 * 122.54341 * 180.02562 * 4 3 2 30 30 H 1.00902 * 110.99877 * 182.90768 * 10 8 6 31 31 H 1.00902 * 111.00326 * 306.86308 * 10 8 6 32 32 H 0.97001 * 119.99646 * 180.02562 * 16 15 13 33 33 H 1.09000 * 110.40950 * 142.63090 * 21 11 8 34 34 H 1.08992 * 110.41273 * 265.07206 * 21 11 8 35 35 H 1.09003 * 109.46835 * 304.45356 * 23 22 6 36 36 H 1.08995 * 109.46994 * 64.45505 * 23 22 6 37 37 H 1.08997 * 109.47481 * 184.45449 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2759 1.0899 0.0000 4 6 3.6380 0.8429 0.0006 5 6 3.9751 -0.4478 0.0016 6 6 5.3860 -0.9771 0.0018 7 1 6.0804 -0.2061 0.3355 8 6 5.7753 -1.4801 -1.4049 9 1 6.3519 -0.7202 -1.9325 10 7 4.5729 -1.8333 -2.1713 11 6 6.6402 -2.7332 -1.1574 12 1 6.1742 -3.6111 -1.6048 13 6 8.0243 -2.5331 -1.7189 14 1 8.2654 -1.6243 -2.2503 15 6 8.9830 -3.5103 -1.5541 16 7 8.6894 -4.6172 -0.9074 17 14 10.6965 -3.2655 -2.2567 18 1 10.7680 -1.9487 -2.9395 19 1 11.6931 -3.3069 -1.1565 20 1 10.9905 -4.3461 -3.2319 21 6 6.7002 -2.8824 0.3780 22 7 5.4887 -2.1780 0.8703 23 6 5.6382 -1.7962 2.2810 24 16 2.5209 -1.4372 -0.0052 25 1 -0.3634 0.0000 -1.0277 26 1 -0.3634 -0.8899 0.5139 27 1 -0.3634 0.8900 0.5137 28 1 1.8669 2.0894 -0.0010 29 1 4.3721 1.6350 0.0010 30 1 4.8176 -2.2080 -3.0757 31 1 3.9931 -2.4794 -1.6571 32 1 9.3640 -5.3044 -0.7911 33 1 6.6691 -3.9350 0.6591 34 1 7.6002 -2.4095 0.7710 35 1 6.4974 -1.1342 2.3891 36 1 4.7379 -1.2807 2.6152 37 1 5.7904 -2.6905 2.8853 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259909674.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:09:58 Heat of formation + Delta-G solvation = 34.107132 kcal Electronic energy + Delta-G solvation = -18507.878449 eV Core-core repulsion = 15797.292204 eV Total energy + Delta-G solvation = -2710.586245 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 1.80 seconds Orbital eigenvalues (eV) -38.89219 -37.15467 -33.54030 -32.90677 -31.68816 -29.19040 -28.14258 -25.70413 -24.68856 -23.29114 -22.43836 -20.11923 -19.57249 -18.27381 -16.78127 -16.26418 -15.36161 -15.06549 -14.60932 -13.97831 -13.91456 -13.61469 -13.58009 -13.14229 -12.86384 -12.45527 -12.07205 -11.98336 -11.82728 -11.70203 -11.16979 -11.04997 -10.92046 -10.90368 -10.66367 -10.39636 -10.20115 -10.12410 -9.84521 -9.08203 -8.56889 -7.99117 -7.90169 -7.79625 -7.66800 -6.13857 -4.18554 1.49506 2.11913 2.59156 3.18026 3.22296 3.31242 3.34781 4.33687 4.69346 5.13030 5.19081 5.22684 5.39539 5.54106 5.60137 5.62953 5.71515 5.80248 5.90137 5.93411 6.08402 6.10143 6.28128 6.34538 6.51394 6.59437 6.68214 6.79631 6.89509 6.98263 7.31277 7.47661 7.61646 7.72222 7.86898 7.94935 8.16004 8.34522 8.85008 9.47054 10.95050 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.036800 B = 0.005319 C = 0.005148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.678876 B = 5262.506846 C = 5437.859663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.220 4.220 3 C -0.133 4.133 4 C -0.166 4.166 5 C -0.105 4.105 6 C 0.127 3.873 7 H 0.064 0.936 8 C 0.097 3.903 9 H 0.081 0.919 10 N -0.838 5.838 11 C 0.022 3.978 12 H 0.035 0.965 13 C -0.519 4.519 14 H 0.059 0.941 15 C 0.065 3.935 16 N -0.887 5.887 17 Si 0.891 3.109 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.283 1.283 21 C 0.060 3.940 22 N -0.523 5.523 23 C 0.019 3.981 24 S 0.148 5.852 25 H 0.067 0.933 26 H 0.062 0.938 27 H 0.067 0.933 28 H 0.125 0.875 29 H 0.127 0.873 30 H 0.336 0.664 31 H 0.333 0.667 32 H 0.261 0.739 33 H 0.076 0.924 34 H 0.037 0.963 35 H 0.023 0.977 36 H 0.057 0.943 37 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.642 7.137 3.427 14.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.338 4.338 3 C -0.164 4.164 4 C -0.196 4.196 5 C -0.223 4.223 6 C 0.016 3.984 7 H 0.082 0.918 8 C -0.015 4.015 9 H 0.099 0.901 10 N -0.368 5.368 11 C 0.001 3.999 12 H 0.053 0.947 13 C -0.558 4.558 14 H 0.077 0.923 15 C -0.138 4.138 16 N -0.524 5.524 17 Si 0.719 3.281 18 H -0.197 1.197 19 H -0.210 1.210 20 H -0.209 1.209 21 C -0.067 4.067 22 N -0.247 5.247 23 C -0.130 4.130 24 S 0.413 5.587 25 H 0.086 0.914 26 H 0.081 0.919 27 H 0.086 0.914 28 H 0.143 0.857 29 H 0.145 0.855 30 H 0.149 0.851 31 H 0.147 0.853 32 H 0.071 0.929 33 H 0.095 0.905 34 H 0.056 0.944 35 H 0.041 0.959 36 H 0.076 0.924 37 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -12.502 5.836 3.509 14.236 hybrid contribution 2.614 1.159 -0.140 2.862 sum -9.888 6.995 3.369 12.572 Atomic orbital electron populations 1.20207 0.88785 1.02269 1.02058 1.24514 0.99574 0.97428 1.12247 1.19821 0.92878 0.98489 1.05181 1.19852 0.95903 0.95777 1.08021 1.24125 0.97951 0.95643 1.04625 1.21229 0.89345 0.92539 0.95296 0.91808 1.22383 0.89809 0.98612 0.90704 0.90056 1.59313 1.19648 1.50717 1.07144 1.20173 0.95276 0.92715 0.91732 0.94691 1.21214 0.95289 1.03421 1.35831 0.92314 1.25004 0.98810 0.95047 0.94942 1.69967 1.34119 1.07181 1.41171 0.86543 0.84384 0.78260 0.78902 1.19714 1.21029 1.20939 1.23196 0.87500 0.98055 0.97923 1.65397 1.39971 1.17875 1.01503 1.22411 0.99605 1.00048 0.90985 1.84066 0.95237 1.08002 1.71402 0.91413 0.91881 0.91408 0.85668 0.85484 0.85145 0.85260 0.92915 0.90547 0.94448 0.95865 0.92420 0.91751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.78 10.38 36.00 0.37 -0.41 16 2 C -0.22 -3.07 6.51 -36.00 -0.23 -3.30 16 3 C -0.13 -1.89 10.05 -41.21 -0.41 -2.30 16 4 C -0.17 -2.62 10.05 -41.21 -0.41 -3.03 16 5 C -0.10 -1.79 4.48 -36.00 -0.16 -1.95 16 6 C 0.13 2.40 2.62 -67.22 -0.18 2.22 16 7 H 0.06 1.22 7.90 -51.93 -0.41 0.81 16 8 C 0.10 1.99 3.70 -66.33 -0.25 1.75 16 9 H 0.08 1.74 7.43 -51.93 -0.39 1.36 16 10 N -0.84 -15.50 7.91 -3.49 -0.03 -15.53 16 11 C 0.02 0.52 2.76 -90.39 -0.25 0.27 16 12 H 0.04 0.91 7.95 -51.93 -0.41 0.50 16 13 C -0.52 -13.63 8.41 -34.44 -0.29 -13.91 16 14 H 0.06 1.54 7.36 -52.49 -0.39 1.15 16 15 C 0.06 1.72 5.33 -17.82 -0.09 1.63 16 16 N -0.89 -24.59 12.35 55.43 0.68 -23.91 16 17 Si 0.89 20.72 29.54 -169.99 -5.02 15.70 16 18 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 19 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 20 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 21 C 0.06 1.38 5.05 -2.19 -0.01 1.37 16 22 N -0.52 -10.19 5.13 -231.75 -1.19 -11.38 16 23 C 0.02 0.32 9.41 60.07 0.57 0.88 16 24 S 0.15 2.33 20.82 -107.50 -2.24 0.09 16 25 H 0.07 0.66 8.14 -51.92 -0.42 0.23 16 26 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 28 H 0.13 1.50 8.06 -52.49 -0.42 1.07 16 29 H 0.13 1.85 8.06 -52.49 -0.42 1.43 16 30 H 0.34 6.01 9.06 -39.29 -0.36 5.66 16 31 H 0.33 6.14 6.81 -39.29 -0.27 5.87 16 32 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 33 H 0.08 1.90 7.94 -51.93 -0.41 1.49 16 34 H 0.04 0.92 7.68 -51.93 -0.40 0.52 16 35 H 0.02 0.39 7.97 -51.93 -0.41 -0.03 16 36 H 0.06 0.90 8.04 -51.93 -0.42 0.49 16 37 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 310.95 15.07 4.69 4.69 Total: -1.00 -27.25 310.95 -9.99 -37.24 By element: Atomic # 1 Polarization: 15.42 SS G_CDS: -5.53 Total: 9.89 kcal Atomic # 6 Polarization: -15.44 SS G_CDS: -1.35 Total: -16.79 kcal Atomic # 7 Polarization: -50.28 SS G_CDS: -0.53 Total: -50.81 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Atomic # 16 Polarization: 2.33 SS G_CDS: -2.24 Total: 0.09 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -27.25 -9.99 -37.24 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259909674.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.349 kcal (2) G-P(sol) polarization free energy of solvation -27.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.242 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.80 seconds