Wall clock time and date at job start Mon Mar 30 2020 05:09:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.33391 * 125.20472 * 2 1 4 4 C 1.38424 * 114.92317 * 179.97438 * 3 2 1 5 5 C 1.33397 * 114.92099 * 359.97438 * 4 3 2 6 6 C 1.50696 * 125.20390 * 179.97438 * 5 4 3 7 7 H 1.08996 * 110.36572 * 19.10450 * 6 5 4 8 8 C 1.54381 * 110.51153 * 256.68395 * 6 5 4 9 9 H 1.09005 * 110.32006 * 98.42230 * 8 6 5 10 10 N 1.46897 * 110.32357 * 336.21576 * 8 6 5 11 11 C 1.54261 * 105.06114 * 217.31862 * 8 6 5 12 12 H 1.08999 * 110.40917 * 118.93993 * 11 8 6 13 13 C 1.50694 * 110.32327 * 241.10548 * 11 8 6 14 14 H 1.08000 * 120.00563 * 357.09186 * 13 11 8 15 15 C 1.37885 * 119.99902 * 177.09023 * 13 11 8 16 16 N 1.31516 * 119.99913 * 0.02562 * 15 13 11 17 17 Si 1.86805 * 119.99854 * 179.72538 * 15 13 11 18 18 H 1.48504 * 109.47032 * 0.02562 * 17 15 13 19 19 H 1.48497 * 109.46816 * 120.00323 * 17 15 13 20 20 H 1.48495 * 109.46630 * 240.00111 * 17 15 13 21 21 C 1.54383 * 105.06068 * 0.02562 * 11 8 6 22 22 N 1.48559 * 110.41051 * 141.45574 * 6 5 4 23 23 C 1.46903 * 111.00026 * 277.93752 * 22 6 5 24 24 S 1.75884 * 109.59024 * 0.24414 * 5 4 3 25 25 H 1.09008 * 109.47097 * 90.00064 * 1 2 3 26 26 H 1.08998 * 109.47459 * 210.00251 * 1 2 3 27 27 H 1.08999 * 109.47370 * 330.00846 * 1 2 3 28 28 H 1.07991 * 122.53648 * 359.93921 * 3 2 1 29 29 H 1.07997 * 122.54341 * 180.02562 * 4 3 2 30 30 H 1.00902 * 110.99877 * 182.90768 * 10 8 6 31 31 H 1.00902 * 111.00326 * 306.86308 * 10 8 6 32 32 H 0.97001 * 119.99646 * 180.02562 * 16 15 13 33 33 H 1.09000 * 110.40950 * 142.63090 * 21 11 8 34 34 H 1.08992 * 110.41273 * 265.07206 * 21 11 8 35 35 H 1.09003 * 109.46835 * 304.45356 * 23 22 6 36 36 H 1.08995 * 109.46994 * 64.45505 * 23 22 6 37 37 H 1.08997 * 109.47481 * 184.45449 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2759 1.0899 0.0000 4 6 3.6380 0.8429 0.0006 5 6 3.9751 -0.4478 0.0016 6 6 5.3860 -0.9771 0.0018 7 1 6.0804 -0.2061 0.3355 8 6 5.7753 -1.4801 -1.4049 9 1 6.3519 -0.7202 -1.9325 10 7 4.5729 -1.8333 -2.1713 11 6 6.6402 -2.7332 -1.1574 12 1 6.1742 -3.6111 -1.6048 13 6 8.0243 -2.5331 -1.7189 14 1 8.2654 -1.6243 -2.2503 15 6 8.9830 -3.5103 -1.5541 16 7 8.6894 -4.6172 -0.9074 17 14 10.6965 -3.2655 -2.2567 18 1 10.7680 -1.9487 -2.9395 19 1 11.6931 -3.3069 -1.1565 20 1 10.9905 -4.3461 -3.2319 21 6 6.7002 -2.8824 0.3780 22 7 5.4887 -2.1780 0.8703 23 6 5.6382 -1.7962 2.2810 24 16 2.5209 -1.4372 -0.0052 25 1 -0.3634 0.0000 -1.0277 26 1 -0.3634 -0.8899 0.5139 27 1 -0.3634 0.8900 0.5137 28 1 1.8669 2.0894 -0.0010 29 1 4.3721 1.6350 0.0010 30 1 4.8176 -2.2080 -3.0757 31 1 3.9931 -2.4794 -1.6571 32 1 9.3640 -5.3044 -0.7911 33 1 6.6691 -3.9350 0.6591 34 1 7.6002 -2.4095 0.7710 35 1 6.4974 -1.1342 2.3891 36 1 4.7379 -1.2807 2.6152 37 1 5.7904 -2.6905 2.8853 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259909674.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:09:58 Heat of formation + Delta-G solvation = 16.615767 kcal Electronic energy + Delta-G solvation = -18508.636931 eV Core-core repulsion = 15797.292204 eV Total energy + Delta-G solvation = -2711.344727 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.47917 -38.37565 -35.29895 -34.63582 -32.92959 -30.92129 -29.45600 -27.47277 -26.03919 -25.00828 -23.62284 -21.80485 -21.17276 -19.55253 -18.65351 -17.66375 -16.89548 -16.69337 -16.24534 -15.48402 -15.30794 -15.24319 -14.73737 -14.54906 -14.22039 -13.86252 -13.54520 -13.35883 -13.18566 -13.02980 -12.89174 -12.70791 -12.59551 -12.23702 -12.20739 -12.09701 -11.91436 -11.62684 -11.33662 -11.04745 -10.62053 -9.55506 -9.32075 -9.09939 -9.05373 -8.18747 -6.30486 0.31237 0.94502 1.36930 1.40057 1.40631 1.50560 2.01578 2.38429 3.06387 3.20358 3.69471 4.02817 4.08462 4.17452 4.23155 4.39334 4.55336 4.57262 4.67380 4.70143 4.80158 4.85456 4.91347 4.91545 4.97862 5.10652 5.21212 5.40088 5.45187 5.55291 5.57439 5.73506 5.80135 5.90650 6.15179 6.22451 6.40529 6.65858 6.81559 7.38267 8.89102 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.036800 B = 0.005319 C = 0.005148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.678876 B = 5262.506846 C = 5437.859663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C -0.205 4.205 3 C -0.145 4.145 4 C -0.158 4.158 5 C -0.134 4.134 6 C 0.134 3.866 7 H 0.060 0.940 8 C 0.105 3.895 9 H 0.071 0.929 10 N -0.825 5.825 11 C 0.020 3.980 12 H 0.005 0.995 13 C -0.534 4.534 14 H 0.055 0.945 15 C 0.018 3.982 16 N -0.915 5.915 17 Si 0.953 3.047 18 H -0.267 1.267 19 H -0.281 1.281 20 H -0.281 1.281 21 C 0.078 3.922 22 N -0.521 5.521 23 C 0.020 3.980 24 S 0.127 5.873 25 H 0.079 0.921 26 H 0.070 0.930 27 H 0.089 0.911 28 H 0.153 0.847 29 H 0.136 0.864 30 H 0.338 0.662 31 H 0.335 0.665 32 H 0.262 0.738 33 H 0.050 0.950 34 H 0.015 0.985 35 H 0.024 0.976 36 H 0.075 0.925 37 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.030 8.789 3.558 16.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.323 4.323 3 C -0.175 4.175 4 C -0.189 4.189 5 C -0.253 4.253 6 C 0.024 3.976 7 H 0.077 0.923 8 C -0.008 4.008 9 H 0.089 0.911 10 N -0.355 5.355 11 C -0.001 4.001 12 H 0.024 0.976 13 C -0.572 4.572 14 H 0.074 0.926 15 C -0.182 4.182 16 N -0.554 5.554 17 Si 0.779 3.221 18 H -0.191 1.191 19 H -0.207 1.207 20 H -0.207 1.207 21 C -0.050 4.050 22 N -0.245 5.245 23 C -0.129 4.129 24 S 0.391 5.609 25 H 0.097 0.903 26 H 0.089 0.911 27 H 0.107 0.893 28 H 0.170 0.830 29 H 0.154 0.846 30 H 0.151 0.849 31 H 0.150 0.850 32 H 0.071 0.929 33 H 0.068 0.932 34 H 0.034 0.966 35 H 0.043 0.957 36 H 0.094 0.906 37 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -13.905 7.500 3.638 16.212 hybrid contribution 2.941 0.684 -0.174 3.025 sum -10.964 8.184 3.463 14.113 Atomic orbital electron populations 1.20360 0.86176 1.03741 1.03236 1.24973 1.01154 0.96082 1.10066 1.20080 0.92096 0.99923 1.05376 1.20139 0.97147 0.95410 1.06183 1.23876 0.97112 0.96461 1.07835 1.21066 0.90976 0.91872 0.93715 0.92252 1.22171 0.89830 0.96653 0.92129 0.91123 1.59299 1.18524 1.50681 1.06994 1.20101 0.94801 0.93168 0.91985 0.97644 1.21521 0.96593 1.03293 1.35801 0.92641 1.25734 1.02351 0.94806 0.95269 1.70083 1.35203 1.07877 1.42216 0.85571 0.80029 0.78284 0.78191 1.19111 1.20726 1.20658 1.22769 0.88110 0.96704 0.97412 1.65343 1.37637 1.18516 1.03007 1.22460 1.00533 1.00555 0.89342 1.84104 0.95447 1.09410 1.71933 0.90265 0.91102 0.89258 0.82956 0.84617 0.84904 0.85017 0.92921 0.93159 0.96627 0.95711 0.90631 0.91185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.32 10.38 71.23 0.74 -0.58 16 2 C -0.20 -5.10 6.51 24.59 0.16 -4.94 16 3 C -0.14 -3.65 10.05 21.22 0.21 -3.44 16 4 C -0.16 -4.65 10.05 21.22 0.21 -4.43 16 5 C -0.13 -4.44 4.48 24.59 0.11 -4.33 16 6 C 0.13 5.06 2.62 44.32 0.12 5.18 16 7 H 0.06 2.27 7.90 -2.39 -0.02 2.25 16 8 C 0.11 4.36 3.70 45.81 0.17 4.53 16 9 H 0.07 3.07 7.43 -2.38 -0.02 3.05 16 10 N -0.83 -30.55 7.91 -164.97 -1.31 -31.86 16 11 C 0.02 1.00 2.76 -10.64 -0.03 0.97 16 12 H 0.01 0.30 7.95 -2.39 -0.02 0.28 16 13 C -0.53 -28.69 8.41 25.60 0.22 -28.47 16 14 H 0.06 2.95 7.36 -2.91 -0.02 2.93 16 15 C 0.02 0.99 5.33 84.66 0.45 1.44 16 16 N -0.92 -52.08 12.35 21.45 0.26 -51.81 16 17 Si 0.95 42.95 29.54 68.60 2.03 44.98 16 18 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 19 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 20 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 21 C 0.08 3.71 5.05 86.46 0.44 4.14 16 22 N -0.52 -20.44 5.13 -887.11 -4.55 -24.99 16 23 C 0.02 0.66 9.41 127.69 1.20 1.86 16 24 S 0.13 3.78 20.82 -56.49 -1.18 2.61 16 25 H 0.08 1.24 8.14 -2.38 -0.02 1.22 16 26 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 27 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 28 H 0.15 2.99 8.06 -2.92 -0.02 2.97 16 29 H 0.14 3.66 8.06 -2.91 -0.02 3.64 16 30 H 0.34 12.19 9.06 -89.69 -0.81 11.38 16 31 H 0.34 12.39 6.81 -89.69 -0.61 11.77 16 32 H 0.26 14.20 8.31 -92.71 -0.77 13.43 16 33 H 0.05 2.62 7.94 -2.39 -0.02 2.60 16 34 H 0.02 0.79 7.68 -2.39 -0.02 0.77 16 35 H 0.02 0.81 7.97 -2.39 -0.02 0.79 16 36 H 0.07 2.26 8.04 -2.39 -0.02 2.24 16 37 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 Total: -1.00 -58.72 310.95 -1.09 -59.81 By element: Atomic # 1 Polarization: 29.67 SS G_CDS: -0.35 Total: 29.32 kcal Atomic # 6 Polarization: -32.06 SS G_CDS: 4.00 Total: -28.06 kcal Atomic # 7 Polarization: -103.07 SS G_CDS: -5.59 Total: -108.66 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 2.03 Total: 44.98 kcal Atomic # 16 Polarization: 3.78 SS G_CDS: -1.18 Total: 2.61 kcal Total: -58.72 -1.09 -59.81 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259909674.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.425 kcal (2) G-P(sol) polarization free energy of solvation -58.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.809 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds