Wall clock time and date at job start Mon Mar 30 2020 05:10:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.33395 * 125.20180 * 2 1 4 4 C 1.38425 * 114.91926 * 179.79581 * 3 2 1 5 5 C 1.33388 * 114.92164 * 0.42934 * 4 3 2 6 6 C 1.50701 * 125.20222 * 179.86261 * 5 4 3 7 7 H 1.09003 * 110.72678 * 18.07554 * 6 5 4 8 8 C 1.54930 * 110.66735 * 254.97710 * 6 5 4 9 9 H 1.09004 * 110.72331 * 85.79053 * 8 6 5 10 10 N 1.46904 * 110.72657 * 322.69193 * 8 6 5 11 11 C 1.55034 * 102.99846 * 204.21844 * 8 6 5 12 12 H 1.09000 * 110.37436 * 262.99820 * 11 8 6 13 13 C 1.50701 * 110.45318 * 140.68929 * 11 8 6 14 14 H 1.08003 * 119.99863 * 3.00858 * 13 11 8 15 15 C 1.37878 * 120.00149 * 183.00683 * 13 11 8 16 16 N 1.31514 * 119.99927 * 0.02562 * 15 13 11 17 17 Si 1.86799 * 119.99983 * 180.02562 * 15 13 11 18 18 H 1.48495 * 109.47139 * 90.00059 * 17 15 13 19 19 H 1.48505 * 109.46801 * 210.00204 * 17 15 13 20 20 H 1.48503 * 109.47099 * 329.99724 * 17 15 13 21 21 C 1.53995 * 104.92429 * 21.82504 * 11 8 6 22 22 N 1.47900 * 107.22641 * 1.37076 * 21 11 8 23 23 C 1.46893 * 111.00241 * 214.05845 * 22 21 11 24 24 S 1.75880 * 109.59392 * 359.59451 * 5 4 3 25 25 H 1.09000 * 109.47052 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47290 * 299.99642 * 1 2 3 27 27 H 1.08997 * 109.47724 * 60.00014 * 1 2 3 28 28 H 1.08003 * 122.53842 * 0.02562 * 3 2 1 29 29 H 1.08000 * 122.53718 * 180.27007 * 4 3 2 30 30 H 1.00894 * 111.00441 * 179.97438 * 10 8 6 31 31 H 1.00900 * 110.99163 * 303.95081 * 10 8 6 32 32 H 0.97000 * 119.99850 * 180.02562 * 16 15 13 33 33 H 1.09002 * 109.91760 * 241.91819 * 21 11 8 34 34 H 1.09002 * 109.91779 * 120.81923 * 21 11 8 35 35 H 1.09006 * 109.47194 * 59.87058 * 23 22 21 36 36 H 1.08994 * 109.47697 * 179.87321 * 23 22 21 37 37 H 1.09006 * 109.47025 * 299.87373 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2759 1.0900 0.0000 4 6 3.6379 0.8429 0.0045 5 6 3.9751 -0.4476 -0.0010 6 6 5.3861 -0.9769 -0.0007 7 1 6.0870 -0.2065 0.3206 8 6 5.7688 -1.5142 -1.4026 9 1 6.1416 -0.7090 -2.0357 10 7 4.6226 -2.1813 -2.0345 11 6 6.8946 -2.5332 -1.0901 12 1 7.8727 -2.0723 -1.2282 13 6 6.7607 -3.7513 -1.9672 14 1 5.9864 -3.7930 -2.7189 15 6 7.6267 -4.8126 -1.8099 16 7 8.5693 -4.7621 -0.8942 17 14 7.4612 -6.3223 -2.8976 18 1 8.2908 -6.1474 -4.1167 19 1 7.9219 -7.5217 -2.1530 20 1 6.0390 -6.4978 -3.2876 21 6 6.6867 -2.9132 0.3877 22 7 5.4950 -2.1788 0.8652 23 6 5.6412 -1.7992 2.2767 24 16 2.5210 -1.4371 -0.0007 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 1.8668 2.0895 0.0004 29 1 4.3720 1.6351 0.0093 30 1 4.8671 -2.5325 -2.9481 31 1 4.2649 -2.9194 -1.4468 32 1 9.1788 -5.5086 -0.7838 33 1 7.5601 -2.6236 0.9720 34 1 6.5209 -3.9869 0.4752 35 1 6.5171 -1.1607 2.3924 36 1 4.7522 -1.2587 2.6016 37 1 5.7630 -2.6964 2.8836 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259909675.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:10:03 Heat of formation + Delta-G solvation = 39.296240 kcal Electronic energy + Delta-G solvation = -18613.008493 eV Core-core repulsion = 15902.647265 eV Total energy + Delta-G solvation = -2710.361228 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -38.86635 -37.13849 -33.65034 -32.63030 -31.63859 -28.95190 -28.17893 -25.65475 -24.57381 -23.65969 -22.37761 -20.00067 -19.42696 -18.27256 -16.59043 -15.92243 -15.53998 -15.09934 -14.60395 -14.10064 -13.75745 -13.55648 -13.47017 -12.94115 -12.78429 -12.54062 -12.17143 -11.91355 -11.77218 -11.67725 -11.33941 -11.11569 -10.97037 -10.74946 -10.64887 -10.56408 -10.07238 -9.92440 -9.64605 -8.99060 -8.52749 -7.98016 -7.83808 -7.69589 -7.43541 -6.13380 -4.17605 1.54786 2.21201 2.69657 3.20190 3.24731 3.32373 3.34877 4.35005 4.69023 5.18359 5.19934 5.32552 5.44159 5.55353 5.63655 5.67059 5.73721 5.83087 5.94033 5.96349 6.11332 6.14236 6.28048 6.40280 6.45094 6.57888 6.64521 6.79617 6.91041 7.03000 7.22793 7.57798 7.65729 7.80977 7.89652 8.13523 8.30510 8.47456 8.84189 9.47912 10.96097 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.028804 B = 0.005987 C = 0.005496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.862442 B = 4675.447348 C = 5093.847649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.227 4.227 3 C -0.138 4.138 4 C -0.171 4.171 5 C -0.110 4.110 6 C 0.126 3.874 7 H 0.061 0.939 8 C 0.100 3.900 9 H 0.069 0.931 10 N -0.826 5.826 11 C 0.012 3.988 12 H 0.030 0.970 13 C -0.517 4.517 14 H 0.063 0.937 15 C 0.065 3.935 16 N -0.888 5.888 17 Si 0.892 3.108 18 H -0.282 1.282 19 H -0.287 1.287 20 H -0.273 1.273 21 C 0.065 3.935 22 N -0.521 5.521 23 C 0.021 3.979 24 S 0.177 5.823 25 H 0.061 0.939 26 H 0.066 0.934 27 H 0.067 0.933 28 H 0.123 0.877 29 H 0.125 0.875 30 H 0.340 0.660 31 H 0.343 0.657 32 H 0.261 0.739 33 H 0.021 0.979 34 H 0.084 0.916 35 H 0.020 0.980 36 H 0.057 0.943 37 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.442 8.090 3.458 13.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.345 4.345 3 C -0.169 4.169 4 C -0.201 4.201 5 C -0.229 4.229 6 C 0.016 3.984 7 H 0.078 0.922 8 C -0.013 4.013 9 H 0.087 0.913 10 N -0.357 5.357 11 C -0.009 4.009 12 H 0.049 0.951 13 C -0.555 4.555 14 H 0.081 0.919 15 C -0.138 4.138 16 N -0.526 5.526 17 Si 0.720 3.280 18 H -0.208 1.208 19 H -0.213 1.213 20 H -0.198 1.198 21 C -0.062 4.062 22 N -0.246 5.246 23 C -0.128 4.128 24 S 0.443 5.557 25 H 0.080 0.920 26 H 0.084 0.916 27 H 0.086 0.914 28 H 0.141 0.859 29 H 0.143 0.857 30 H 0.155 0.845 31 H 0.156 0.844 32 H 0.071 0.929 33 H 0.040 0.960 34 H 0.102 0.898 35 H 0.038 0.962 36 H 0.076 0.924 37 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -11.395 6.785 3.554 13.731 hybrid contribution 1.944 0.395 -0.330 2.011 sum -9.451 7.181 3.225 12.300 Atomic orbital electron populations 1.20182 0.88908 1.02176 1.01935 1.24614 0.99673 0.97982 1.12245 1.19757 0.92865 0.98474 1.05791 1.19836 0.95894 0.95711 1.08697 1.24106 0.98249 0.95611 1.04977 1.21333 0.89478 0.92220 0.95389 0.92156 1.22326 0.91188 0.96314 0.91519 0.91282 1.59197 1.32615 1.36419 1.07441 1.20266 0.94139 0.94448 0.92077 0.95144 1.21096 1.15705 1.00429 1.18279 0.91895 1.24972 0.95005 0.98528 0.95252 1.69971 1.17864 1.31772 1.32960 0.86588 0.78446 0.82492 0.80452 1.20772 1.21316 1.19779 1.22972 0.87104 0.99009 0.97086 1.64757 1.41105 1.17367 1.01334 1.22430 0.99394 0.99990 0.91012 1.84193 0.94494 1.07047 1.69953 0.91962 0.91562 0.91430 0.85871 0.85696 0.84536 0.84386 0.92929 0.96041 0.89781 0.96153 0.92408 0.91791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.80 10.38 36.00 0.37 -0.43 16 2 C -0.23 -3.25 6.51 -36.00 -0.23 -3.49 16 3 C -0.14 -1.99 10.05 -41.21 -0.41 -2.40 16 4 C -0.17 -2.69 10.05 -41.21 -0.41 -3.11 16 5 C -0.11 -1.89 4.80 -36.00 -0.17 -2.07 16 6 C 0.13 2.34 2.60 -66.94 -0.17 2.17 16 7 H 0.06 1.10 7.96 -51.93 -0.41 0.69 16 8 C 0.10 2.02 3.83 -65.62 -0.25 1.77 16 9 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 10 N -0.83 -15.98 7.04 -2.89 -0.02 -16.00 16 11 C 0.01 0.27 2.90 -90.18 -0.26 0.01 16 12 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 13 C -0.52 -13.09 7.83 -34.44 -0.27 -13.36 16 14 H 0.06 1.54 5.50 -52.48 -0.29 1.25 16 15 C 0.06 1.71 5.07 -17.82 -0.09 1.62 16 16 N -0.89 -24.48 12.31 55.43 0.68 -23.80 16 17 Si 0.89 20.57 29.54 -169.99 -5.02 15.54 16 18 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 19 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 20 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 21 C 0.07 1.48 5.49 -2.75 -0.02 1.47 16 22 N -0.52 -10.13 4.96 -232.21 -1.15 -11.29 16 23 C 0.02 0.35 9.30 60.06 0.56 0.91 16 24 S 0.18 2.87 21.28 -107.50 -2.29 0.58 16 25 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 28 H 0.12 1.50 8.06 -52.48 -0.42 1.08 16 29 H 0.13 1.79 8.06 -52.49 -0.42 1.36 16 30 H 0.34 6.61 7.09 -39.29 -0.28 6.33 16 31 H 0.34 6.99 7.76 -39.29 -0.31 6.69 16 32 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 33 H 0.02 0.50 7.73 -51.93 -0.40 0.10 16 34 H 0.08 2.16 7.11 -51.93 -0.37 1.79 16 35 H 0.02 0.33 8.00 -51.93 -0.42 -0.08 16 36 H 0.06 0.91 8.00 -51.93 -0.42 0.49 16 37 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 307.71 15.07 4.64 4.64 Total: -1.00 -26.59 307.71 -9.93 -36.52 By element: Atomic # 1 Polarization: 16.12 SS G_CDS: -5.41 Total: 10.71 kcal Atomic # 6 Polarization: -15.54 SS G_CDS: -1.37 Total: -16.90 kcal Atomic # 7 Polarization: -50.60 SS G_CDS: -0.49 Total: -51.09 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.54 kcal Atomic # 16 Polarization: 2.87 SS G_CDS: -2.29 Total: 0.58 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -26.59 -9.93 -36.52 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259909675.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.815 kcal (2) G-P(sol) polarization free energy of solvation -26.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.519 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds