Wall clock time and date at job start Mon Mar 30 2020 05:10:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.33395 * 125.20180 * 2 1 4 4 C 1.38425 * 114.91926 * 179.79581 * 3 2 1 5 5 C 1.33388 * 114.92164 * 0.42934 * 4 3 2 6 6 C 1.50701 * 125.20222 * 179.86261 * 5 4 3 7 7 H 1.09003 * 110.72678 * 18.07554 * 6 5 4 8 8 C 1.54930 * 110.66735 * 254.97710 * 6 5 4 9 9 H 1.09004 * 110.72331 * 85.79053 * 8 6 5 10 10 N 1.46904 * 110.72657 * 322.69193 * 8 6 5 11 11 C 1.55034 * 102.99846 * 204.21844 * 8 6 5 12 12 H 1.09000 * 110.37436 * 262.99820 * 11 8 6 13 13 C 1.50701 * 110.45318 * 140.68929 * 11 8 6 14 14 H 1.08003 * 119.99863 * 3.00858 * 13 11 8 15 15 C 1.37878 * 120.00149 * 183.00683 * 13 11 8 16 16 N 1.31514 * 119.99927 * 0.02562 * 15 13 11 17 17 Si 1.86799 * 119.99983 * 180.02562 * 15 13 11 18 18 H 1.48495 * 109.47139 * 90.00059 * 17 15 13 19 19 H 1.48505 * 109.46801 * 210.00204 * 17 15 13 20 20 H 1.48503 * 109.47099 * 329.99724 * 17 15 13 21 21 C 1.53995 * 104.92429 * 21.82504 * 11 8 6 22 22 N 1.47900 * 107.22641 * 1.37076 * 21 11 8 23 23 C 1.46893 * 111.00241 * 214.05845 * 22 21 11 24 24 S 1.75880 * 109.59392 * 359.59451 * 5 4 3 25 25 H 1.09000 * 109.47052 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47290 * 299.99642 * 1 2 3 27 27 H 1.08997 * 109.47724 * 60.00014 * 1 2 3 28 28 H 1.08003 * 122.53842 * 0.02562 * 3 2 1 29 29 H 1.08000 * 122.53718 * 180.27007 * 4 3 2 30 30 H 1.00894 * 111.00441 * 179.97438 * 10 8 6 31 31 H 1.00900 * 110.99163 * 303.95081 * 10 8 6 32 32 H 0.97000 * 119.99850 * 180.02562 * 16 15 13 33 33 H 1.09002 * 109.91760 * 241.91819 * 21 11 8 34 34 H 1.09002 * 109.91779 * 120.81923 * 21 11 8 35 35 H 1.09006 * 109.47194 * 59.87058 * 23 22 21 36 36 H 1.08994 * 109.47697 * 179.87321 * 23 22 21 37 37 H 1.09006 * 109.47025 * 299.87373 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2759 1.0900 0.0000 4 6 3.6379 0.8429 0.0045 5 6 3.9751 -0.4476 -0.0010 6 6 5.3861 -0.9769 -0.0007 7 1 6.0870 -0.2065 0.3206 8 6 5.7688 -1.5142 -1.4026 9 1 6.1416 -0.7090 -2.0357 10 7 4.6226 -2.1813 -2.0345 11 6 6.8946 -2.5332 -1.0901 12 1 7.8727 -2.0723 -1.2282 13 6 6.7607 -3.7513 -1.9672 14 1 5.9864 -3.7930 -2.7189 15 6 7.6267 -4.8126 -1.8099 16 7 8.5693 -4.7621 -0.8942 17 14 7.4612 -6.3223 -2.8976 18 1 8.2908 -6.1474 -4.1167 19 1 7.9219 -7.5217 -2.1530 20 1 6.0390 -6.4978 -3.2876 21 6 6.6867 -2.9132 0.3877 22 7 5.4950 -2.1788 0.8652 23 6 5.6412 -1.7992 2.2767 24 16 2.5210 -1.4371 -0.0007 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 1.8668 2.0895 0.0004 29 1 4.3720 1.6351 0.0093 30 1 4.8671 -2.5325 -2.9481 31 1 4.2649 -2.9194 -1.4468 32 1 9.1788 -5.5086 -0.7838 33 1 7.5601 -2.6236 0.9720 34 1 6.5209 -3.9869 0.4752 35 1 6.5171 -1.1607 2.3924 36 1 4.7522 -1.2587 2.6016 37 1 5.7630 -2.6964 2.8836 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259909675.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:10:02 Heat of formation + Delta-G solvation = 22.776654 kcal Electronic energy + Delta-G solvation = -18613.724836 eV Core-core repulsion = 15902.647265 eV Total energy + Delta-G solvation = -2711.077571 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.45215 -38.35944 -35.39481 -34.33433 -32.91310 -30.63951 -29.53771 -27.35345 -26.00663 -25.30434 -23.56581 -21.62827 -21.09687 -19.51058 -18.29883 -17.57841 -17.03730 -16.71079 -16.13669 -15.60068 -15.24657 -15.03396 -14.56594 -14.54956 -14.12299 -13.92734 -13.63783 -13.42043 -13.09134 -13.02139 -12.93764 -12.82083 -12.50369 -12.27992 -12.17876 -12.09759 -11.61849 -11.50108 -11.24148 -10.92519 -10.54787 -9.47109 -9.19849 -9.05377 -8.91267 -8.15619 -6.24684 0.35568 1.02414 1.40941 1.43327 1.50032 1.51764 2.03550 2.41735 3.14056 3.18584 3.80006 4.07559 4.13147 4.20816 4.30118 4.46003 4.50565 4.57958 4.67196 4.73777 4.81635 4.87065 4.91524 4.93670 4.95799 5.14647 5.21942 5.31187 5.44952 5.59488 5.69067 5.73356 5.84903 6.06031 6.20725 6.29784 6.52944 6.79679 6.88973 7.43598 8.93739 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.028804 B = 0.005987 C = 0.005496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.862442 B = 4675.447348 C = 5093.847649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.213 4.213 3 C -0.149 4.149 4 C -0.162 4.162 5 C -0.138 4.138 6 C 0.135 3.865 7 H 0.063 0.937 8 C 0.106 3.894 9 H 0.072 0.928 10 N -0.811 5.811 11 C 0.005 3.995 12 H -0.002 1.002 13 C -0.521 4.521 14 H 0.071 0.929 15 C 0.015 3.985 16 N -0.920 5.920 17 Si 0.954 3.046 18 H -0.280 1.280 19 H -0.291 1.291 20 H -0.265 1.265 21 C 0.085 3.915 22 N -0.522 5.522 23 C 0.023 3.977 24 S 0.146 5.854 25 H 0.066 0.934 26 H 0.085 0.915 27 H 0.082 0.918 28 H 0.150 0.850 29 H 0.138 0.862 30 H 0.339 0.661 31 H 0.338 0.662 32 H 0.259 0.741 33 H 0.004 0.996 34 H 0.051 0.949 35 H 0.024 0.976 36 H 0.074 0.926 37 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.687 9.242 3.268 16.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.331 4.331 3 C -0.179 4.179 4 C -0.193 4.193 5 C -0.256 4.256 6 C 0.025 3.975 7 H 0.080 0.920 8 C -0.008 4.008 9 H 0.090 0.910 10 N -0.340 5.340 11 C -0.016 4.016 12 H 0.016 0.984 13 C -0.560 4.560 14 H 0.089 0.911 15 C -0.184 4.184 16 N -0.559 5.559 17 Si 0.780 3.220 18 H -0.205 1.205 19 H -0.217 1.217 20 H -0.189 1.189 21 C -0.043 4.043 22 N -0.247 5.247 23 C -0.126 4.126 24 S 0.411 5.589 25 H 0.085 0.915 26 H 0.104 0.896 27 H 0.101 0.899 28 H 0.168 0.832 29 H 0.155 0.845 30 H 0.153 0.847 31 H 0.151 0.849 32 H 0.068 0.932 33 H 0.023 0.977 34 H 0.069 0.931 35 H 0.043 0.957 36 H 0.093 0.907 37 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -13.659 7.953 3.359 16.159 hybrid contribution 2.578 0.131 -0.250 2.594 sum -11.081 8.084 3.109 14.064 Atomic orbital electron populations 1.20327 0.86414 1.03070 1.03567 1.25044 1.01200 0.96634 1.10261 1.20028 0.92218 0.99820 1.05827 1.20134 0.97069 0.95395 1.06727 1.23891 0.97355 0.96339 1.08038 1.21192 0.90984 0.91615 0.93727 0.91966 1.22242 0.90211 0.95431 0.92940 0.91021 1.59213 1.31761 1.35990 1.07081 1.20247 0.93861 0.94901 0.92557 0.98424 1.21450 1.15425 1.00843 1.18250 0.91108 1.25710 0.94926 1.01273 0.96467 1.70101 1.18796 1.32439 1.34598 0.85616 0.78632 0.79088 0.78651 1.20550 1.21683 1.18890 1.22526 0.87774 0.97419 0.96573 1.64683 1.38945 1.18175 1.02854 1.22463 1.00359 1.00427 0.89354 1.84264 0.95114 1.08737 1.70750 0.91530 0.89629 0.89894 0.83201 0.84453 0.84695 0.84922 0.93235 0.97746 0.93096 0.95732 0.90723 0.91507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.36 10.38 71.23 0.74 -0.62 16 2 C -0.21 -5.45 6.51 24.59 0.16 -5.29 16 3 C -0.15 -3.78 10.05 21.22 0.21 -3.56 16 4 C -0.16 -4.69 10.05 21.22 0.21 -4.48 16 5 C -0.14 -4.50 4.80 24.59 0.12 -4.39 16 6 C 0.13 4.94 2.60 44.51 0.12 5.06 16 7 H 0.06 2.23 7.96 -2.39 -0.02 2.21 16 8 C 0.11 4.26 3.83 46.27 0.18 4.44 16 9 H 0.07 2.84 8.14 -2.39 -0.02 2.82 16 10 N -0.81 -30.95 7.04 -163.07 -1.15 -32.10 16 11 C 0.01 0.26 2.90 -10.51 -0.03 0.23 16 12 H 0.00 -0.13 8.14 -2.39 -0.02 -0.15 16 13 C -0.52 -26.82 7.83 25.60 0.20 -26.62 16 14 H 0.07 3.46 5.50 -2.91 -0.02 3.44 16 15 C 0.02 0.82 5.07 84.65 0.43 1.25 16 16 N -0.92 -52.28 12.31 21.45 0.26 -52.01 16 17 Si 0.95 42.64 29.54 68.60 2.03 44.67 16 18 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 19 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 20 H -0.26 -11.37 7.11 99.48 0.71 -10.66 16 21 C 0.08 3.99 5.49 86.45 0.47 4.47 16 22 N -0.52 -20.34 4.96 -888.58 -4.41 -24.75 16 23 C 0.02 0.75 9.30 127.69 1.19 1.94 16 24 S 0.15 4.48 21.28 -56.49 -1.20 3.28 16 25 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 26 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 27 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 28 H 0.15 3.00 8.06 -2.91 -0.02 2.97 16 29 H 0.14 3.55 8.06 -2.91 -0.02 3.52 16 30 H 0.34 12.96 7.09 -89.70 -0.64 12.32 16 31 H 0.34 13.68 7.76 -89.69 -0.70 12.99 16 32 H 0.26 14.17 8.31 -92.71 -0.77 13.40 16 33 H 0.00 0.21 7.73 -2.39 -0.02 0.19 16 34 H 0.05 2.72 7.11 -2.39 -0.02 2.70 16 35 H 0.02 0.79 8.00 -2.38 -0.02 0.77 16 36 H 0.07 2.23 8.00 -2.39 -0.02 2.21 16 37 H 0.07 2.15 8.14 -2.38 -0.02 2.13 16 Total: -1.00 -57.25 307.71 -0.73 -57.97 By element: Atomic # 1 Polarization: 30.78 SS G_CDS: -0.25 Total: 30.53 kcal Atomic # 6 Polarization: -31.58 SS G_CDS: 4.00 Total: -27.58 kcal Atomic # 7 Polarization: -103.57 SS G_CDS: -5.29 Total: -108.87 kcal Atomic # 14 Polarization: 42.64 SS G_CDS: 2.03 Total: 44.67 kcal Atomic # 16 Polarization: 4.48 SS G_CDS: -1.20 Total: 3.28 kcal Total: -57.25 -0.73 -57.97 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259909675.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.749 kcal (2) G-P(sol) polarization free energy of solvation -57.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.972 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds