Wall clock time and date at job start Mon Mar 30 2020 05:10:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.33392 * 125.20404 * 2 1 4 4 C 1.38421 * 114.92078 * 179.75001 * 3 2 1 5 5 C 1.33390 * 114.92116 * 0.42234 * 4 3 2 6 6 C 1.50702 * 125.20326 * 179.86364 * 5 4 3 7 7 H 1.09002 * 109.90715 * 20.82261 * 6 5 4 8 8 C 1.53990 * 109.91614 * 259.72068 * 6 5 4 9 9 H 1.09007 * 110.39491 * 358.18442 * 8 6 5 10 10 N 1.46901 * 110.30931 * 120.30694 * 8 6 5 11 11 C 1.54596 * 105.14292 * 239.22391 * 8 6 5 12 12 H 1.09006 * 110.72516 * 96.57239 * 11 8 6 13 13 C 1.50699 * 110.72736 * 219.68528 * 11 8 6 14 14 H 1.08002 * 119.99796 * 92.78788 * 13 11 8 15 15 C 1.37877 * 120.00085 * 272.78994 * 13 11 8 16 16 N 1.31515 * 119.99876 * 359.97438 * 15 13 11 17 17 Si 1.86799 * 120.00114 * 180.02562 * 15 13 11 18 18 H 1.48498 * 109.46808 * 179.97438 * 17 15 13 19 19 H 1.48497 * 109.46882 * 59.99745 * 17 15 13 20 20 H 1.48504 * 109.46840 * 299.99846 * 17 15 13 21 21 C 1.54943 * 102.91925 * 338.04580 * 11 8 6 22 22 N 1.47896 * 110.08255 * 142.03264 * 6 5 4 23 23 C 1.46901 * 110.99861 * 265.29131 * 22 6 5 24 24 S 1.75885 * 109.59414 * 359.60007 * 5 4 3 25 25 H 1.08997 * 109.47408 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47641 * 300.00834 * 1 2 3 27 27 H 1.09003 * 109.47100 * 60.00173 * 1 2 3 28 28 H 1.08000 * 122.53557 * 359.96905 * 3 2 1 29 29 H 1.08007 * 122.54026 * 180.27004 * 4 3 2 30 30 H 1.00904 * 111.00118 * 181.94354 * 10 8 6 31 31 H 1.00899 * 111.00256 * 305.89705 * 10 8 6 32 32 H 0.97000 * 120.00417 * 0.02562 * 16 15 13 33 33 H 1.08989 * 110.66847 * 155.85010 * 21 11 8 34 34 H 1.09004 * 110.66285 * 278.98154 * 21 11 8 35 35 H 1.08990 * 109.47695 * 59.99856 * 23 22 6 36 36 H 1.09002 * 109.47107 * 180.02562 * 23 22 6 37 37 H 1.09007 * 109.47133 * 299.99590 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2759 1.0900 0.0000 4 6 3.6379 0.8429 0.0055 5 6 3.9750 -0.4477 0.0010 6 6 5.3860 -0.9771 0.0025 7 1 6.0691 -0.2121 0.3717 8 6 5.7901 -1.3973 -1.4228 9 1 4.9587 -1.2503 -2.1123 10 7 6.9617 -0.6309 -1.8675 11 6 6.1401 -2.8994 -1.3170 12 1 5.2889 -3.5153 -1.6073 13 6 7.3452 -3.2269 -2.1605 14 1 8.3324 -3.2065 -1.7229 15 6 7.1875 -3.5526 -3.4910 16 7 5.9854 -3.5779 -4.0238 17 14 8.6812 -3.9593 -4.5364 18 1 8.2456 -4.2735 -5.9209 19 1 9.3836 -5.1340 -3.9603 20 1 9.6017 -2.7941 -4.5589 21 6 6.4606 -3.0752 0.1887 22 7 5.4746 -2.1843 0.8523 23 6 5.9085 -1.8396 2.2127 24 16 2.5209 -1.4372 0.0008 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.8668 2.0895 -0.0005 29 1 4.3721 1.6350 0.0104 30 1 7.2164 -0.8755 -2.8128 31 1 6.7985 0.3612 -1.7823 32 1 5.2097 -3.3671 -3.4809 33 1 6.3114 -4.1103 0.4955 34 1 7.4786 -2.7515 0.4056 35 1 5.1921 -1.1500 2.6589 36 1 5.9657 -2.7455 2.8163 37 1 6.8904 -1.3678 2.1724 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259909677.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:10:06 Heat of formation + Delta-G solvation = 33.578351 kcal Electronic energy + Delta-G solvation = -18541.078801 eV Core-core repulsion = 15830.469627 eV Total energy + Delta-G solvation = -2710.609175 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -38.95700 -37.29821 -33.92986 -32.52098 -31.67260 -29.29175 -28.39935 -25.35344 -24.52998 -23.38251 -22.54152 -20.39705 -19.52012 -18.58008 -16.65368 -16.45951 -15.45524 -14.89380 -14.46326 -14.02339 -13.83322 -13.76303 -13.64895 -13.35694 -13.00121 -12.77685 -12.16735 -12.08798 -11.93646 -11.67550 -11.36015 -11.04424 -10.99746 -10.80331 -10.69104 -10.27524 -10.14941 -10.10824 -9.55312 -8.64258 -8.39218 -8.10925 -8.05970 -7.97478 -7.57750 -6.33917 -4.01414 1.32185 1.98826 2.46428 3.00171 3.44895 3.45527 3.64671 4.43963 4.57056 5.02740 5.20475 5.32834 5.34113 5.39809 5.53301 5.56403 5.65968 5.77951 5.80750 5.84847 5.95924 6.00379 6.12393 6.18950 6.31567 6.40334 6.51232 6.62436 6.77852 6.84421 7.01742 7.30330 7.42708 7.61328 8.02608 8.37357 8.44362 8.53156 8.89808 9.65437 11.04285 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.024865 B = 0.006095 C = 0.005584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.802604 B = 4593.189782 C = 5013.116352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C -0.214 4.214 3 C -0.139 4.139 4 C -0.160 4.160 5 C -0.140 4.140 6 C 0.135 3.865 7 H 0.068 0.932 8 C 0.095 3.905 9 H 0.024 0.976 10 N -0.821 5.821 11 C 0.040 3.960 12 H 0.041 0.959 13 C -0.560 4.560 14 H 0.052 0.948 15 C 0.015 3.985 16 N -0.915 5.915 17 Si 1.066 2.934 18 H -0.285 1.285 19 H -0.289 1.289 20 H -0.288 1.288 21 C 0.051 3.949 22 N -0.522 5.522 23 C 0.021 3.979 24 S 0.153 5.847 25 H 0.064 0.936 26 H 0.069 0.931 27 H 0.070 0.930 28 H 0.129 0.871 29 H 0.130 0.870 30 H 0.355 0.645 31 H 0.307 0.693 32 H 0.268 0.732 33 H 0.066 0.934 34 H 0.043 0.957 35 H 0.058 0.942 36 H 0.064 0.936 37 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.663 7.563 8.656 13.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.332 4.332 3 C -0.170 4.170 4 C -0.190 4.190 5 C -0.259 4.259 6 C 0.024 3.976 7 H 0.086 0.914 8 C -0.018 4.018 9 H 0.042 0.958 10 N -0.352 5.352 11 C 0.020 3.980 12 H 0.059 0.941 13 C -0.599 4.599 14 H 0.070 0.930 15 C -0.189 4.189 16 N -0.552 5.552 17 Si 0.895 3.105 18 H -0.211 1.211 19 H -0.216 1.216 20 H -0.214 1.214 21 C -0.075 4.075 22 N -0.246 5.246 23 C -0.128 4.128 24 S 0.418 5.582 25 H 0.083 0.917 26 H 0.088 0.912 27 H 0.089 0.911 28 H 0.147 0.853 29 H 0.148 0.852 30 H 0.171 0.829 31 H 0.117 0.883 32 H 0.079 0.921 33 H 0.084 0.916 34 H 0.061 0.939 35 H 0.077 0.923 36 H 0.083 0.917 37 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -6.590 4.915 7.771 11.312 hybrid contribution 0.018 2.961 0.871 3.086 sum -6.572 7.875 8.642 13.413 Atomic orbital electron populations 1.20226 0.88467 1.02479 1.02258 1.24630 0.99889 0.97389 1.11290 1.19854 0.92803 0.98769 1.05536 1.19935 0.96062 0.95707 1.07341 1.24629 0.98755 0.95979 1.06515 1.20916 0.88571 0.92453 0.95684 0.91407 1.22308 0.90354 0.98667 0.90504 0.95790 1.58767 1.37972 1.06218 1.32206 1.19818 0.97704 0.89685 0.90751 0.94110 1.21664 0.92733 1.48999 0.96532 0.92998 1.25790 1.02191 0.94505 0.96386 1.70820 0.98604 1.46263 1.39484 0.83571 0.74416 0.76530 0.76013 1.21092 1.21573 1.21425 1.23276 0.92549 0.95254 0.96457 1.64589 1.46351 1.12253 1.01375 1.22437 0.98274 1.00655 0.91466 1.84461 0.95079 1.07471 1.71218 0.91738 0.91205 0.91116 0.85303 0.85182 0.82856 0.88255 0.92063 0.91582 0.93874 0.92350 0.91683 0.95637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.82 10.38 36.00 0.37 -0.44 16 2 C -0.21 -3.07 6.51 -36.00 -0.23 -3.31 16 3 C -0.14 -1.98 10.05 -41.21 -0.41 -2.39 16 4 C -0.16 -2.51 10.04 -41.21 -0.41 -2.93 16 5 C -0.14 -2.46 5.26 -36.00 -0.19 -2.65 16 6 C 0.13 2.56 2.63 -67.80 -0.18 2.38 16 7 H 0.07 1.28 7.48 -51.93 -0.39 0.89 16 8 C 0.09 2.07 3.66 -66.36 -0.24 1.83 16 9 H 0.02 0.58 7.69 -51.92 -0.40 0.18 16 10 N -0.82 -17.17 8.44 -3.51 -0.03 -17.20 16 11 C 0.04 0.98 2.61 -89.91 -0.23 0.74 16 12 H 0.04 1.10 6.89 -51.93 -0.36 0.74 16 13 C -0.56 -14.83 6.71 -34.44 -0.23 -15.06 16 14 H 0.05 1.41 7.74 -52.49 -0.41 1.01 16 15 C 0.01 0.40 5.25 -17.82 -0.09 0.31 16 16 N -0.92 -26.60 13.64 55.43 0.76 -25.84 16 17 Si 1.07 24.49 29.90 -169.99 -5.08 19.40 16 18 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 19 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 20 H -0.29 -6.33 7.11 56.52 0.40 -5.93 16 21 C 0.05 1.10 5.99 -1.89 -0.01 1.09 16 22 N -0.52 -9.90 4.94 -232.17 -1.15 -11.05 16 23 C 0.02 0.33 9.40 60.07 0.56 0.89 16 24 S 0.15 2.56 23.05 -107.50 -2.48 0.09 16 25 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 28 H 0.13 1.52 8.06 -52.49 -0.42 1.09 16 29 H 0.13 1.83 8.06 -52.48 -0.42 1.41 16 30 H 0.36 8.07 7.87 -39.29 -0.31 7.76 16 31 H 0.31 5.54 8.96 -39.29 -0.35 5.19 16 32 H 0.27 7.88 6.73 -40.82 -0.27 7.60 16 33 H 0.07 1.39 8.14 -51.93 -0.42 0.96 16 34 H 0.04 0.95 7.81 -51.93 -0.41 0.54 16 35 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.03 0.40 8.00 -51.93 -0.42 -0.02 16 LS Contribution 313.90 15.07 4.73 4.73 Total: -1.00 -28.56 313.90 -10.04 -38.60 By element: Atomic # 1 Polarization: 16.29 SS G_CDS: -5.49 Total: 10.80 kcal Atomic # 6 Polarization: -18.23 SS G_CDS: -1.31 Total: -19.53 kcal Atomic # 7 Polarization: -53.67 SS G_CDS: -0.42 Total: -54.09 kcal Atomic # 14 Polarization: 24.49 SS G_CDS: -5.08 Total: 19.40 kcal Atomic # 16 Polarization: 2.56 SS G_CDS: -2.48 Total: 0.09 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -28.56 -10.04 -38.60 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259909677.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.182 kcal (2) G-P(sol) polarization free energy of solvation -28.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.604 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds