Wall clock time and date at job start Mon Mar 30 2020 05:10:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.33392 * 125.20404 * 2 1 4 4 C 1.38421 * 114.92078 * 179.75001 * 3 2 1 5 5 C 1.33390 * 114.92116 * 0.42234 * 4 3 2 6 6 C 1.50702 * 125.20326 * 179.86364 * 5 4 3 7 7 H 1.09002 * 109.90715 * 20.82261 * 6 5 4 8 8 C 1.53990 * 109.91614 * 259.72068 * 6 5 4 9 9 H 1.09007 * 110.39491 * 358.18442 * 8 6 5 10 10 N 1.46901 * 110.30931 * 120.30694 * 8 6 5 11 11 C 1.54596 * 105.14292 * 239.22391 * 8 6 5 12 12 H 1.09006 * 110.72516 * 96.57239 * 11 8 6 13 13 C 1.50699 * 110.72736 * 219.68528 * 11 8 6 14 14 H 1.08002 * 119.99796 * 92.78788 * 13 11 8 15 15 C 1.37877 * 120.00085 * 272.78994 * 13 11 8 16 16 N 1.31515 * 119.99876 * 359.97438 * 15 13 11 17 17 Si 1.86799 * 120.00114 * 180.02562 * 15 13 11 18 18 H 1.48498 * 109.46808 * 179.97438 * 17 15 13 19 19 H 1.48497 * 109.46882 * 59.99745 * 17 15 13 20 20 H 1.48504 * 109.46840 * 299.99846 * 17 15 13 21 21 C 1.54943 * 102.91925 * 338.04580 * 11 8 6 22 22 N 1.47896 * 110.08255 * 142.03264 * 6 5 4 23 23 C 1.46901 * 110.99861 * 265.29131 * 22 6 5 24 24 S 1.75885 * 109.59414 * 359.60007 * 5 4 3 25 25 H 1.08997 * 109.47408 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47641 * 300.00834 * 1 2 3 27 27 H 1.09003 * 109.47100 * 60.00173 * 1 2 3 28 28 H 1.08000 * 122.53557 * 359.96905 * 3 2 1 29 29 H 1.08007 * 122.54026 * 180.27004 * 4 3 2 30 30 H 1.00904 * 111.00118 * 181.94354 * 10 8 6 31 31 H 1.00899 * 111.00256 * 305.89705 * 10 8 6 32 32 H 0.97000 * 120.00417 * 0.02562 * 16 15 13 33 33 H 1.08989 * 110.66847 * 155.85010 * 21 11 8 34 34 H 1.09004 * 110.66285 * 278.98154 * 21 11 8 35 35 H 1.08990 * 109.47695 * 59.99856 * 23 22 6 36 36 H 1.09002 * 109.47107 * 180.02562 * 23 22 6 37 37 H 1.09007 * 109.47133 * 299.99590 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2759 1.0900 0.0000 4 6 3.6379 0.8429 0.0055 5 6 3.9750 -0.4477 0.0010 6 6 5.3860 -0.9771 0.0025 7 1 6.0691 -0.2121 0.3717 8 6 5.7901 -1.3973 -1.4228 9 1 4.9587 -1.2503 -2.1123 10 7 6.9617 -0.6309 -1.8675 11 6 6.1401 -2.8994 -1.3170 12 1 5.2889 -3.5153 -1.6073 13 6 7.3452 -3.2269 -2.1605 14 1 8.3324 -3.2065 -1.7229 15 6 7.1875 -3.5526 -3.4910 16 7 5.9854 -3.5779 -4.0238 17 14 8.6812 -3.9593 -4.5364 18 1 8.2456 -4.2735 -5.9209 19 1 9.3836 -5.1340 -3.9603 20 1 9.6017 -2.7941 -4.5589 21 6 6.4606 -3.0752 0.1887 22 7 5.4746 -2.1843 0.8523 23 6 5.9085 -1.8396 2.2127 24 16 2.5209 -1.4372 0.0008 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.8668 2.0895 -0.0005 29 1 4.3721 1.6350 0.0104 30 1 7.2164 -0.8755 -2.8128 31 1 6.7985 0.3612 -1.7823 32 1 5.2097 -3.3671 -3.4809 33 1 6.3114 -4.1103 0.4955 34 1 7.4786 -2.7515 0.4056 35 1 5.1921 -1.1500 2.6589 36 1 5.9657 -2.7455 2.8163 37 1 6.8904 -1.3678 2.1724 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259909677.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:10:05 Heat of formation + Delta-G solvation = 14.688848 kcal Electronic energy + Delta-G solvation = -18541.897912 eV Core-core repulsion = 15830.469627 eV Total energy + Delta-G solvation = -2711.428285 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.53885 -38.54783 -35.74297 -34.17808 -33.05377 -31.03103 -29.72404 -26.99601 -25.98878 -25.16074 -23.74630 -22.02241 -21.27262 -19.83231 -18.57531 -17.86394 -16.97915 -16.42507 -16.08150 -15.60311 -15.51748 -15.20897 -14.92354 -14.79237 -14.42168 -13.93861 -13.61533 -13.53644 -13.24174 -13.06910 -13.00216 -12.65776 -12.37492 -12.28745 -12.27689 -11.95625 -11.85731 -11.48854 -11.47086 -10.62195 -10.47324 -9.55552 -9.42946 -9.30601 -9.25667 -8.52405 -6.19497 0.10664 0.76173 1.24641 1.57698 1.63973 1.82854 1.83109 2.60932 3.00380 3.24844 3.71899 3.78201 4.02688 4.12342 4.20396 4.30542 4.42281 4.43748 4.53732 4.60986 4.65286 4.76340 4.77778 4.82612 4.90131 4.97779 5.10213 5.21410 5.24982 5.38318 5.39025 5.63642 5.78603 6.07920 6.11100 6.28640 6.48738 6.66865 6.85874 7.54704 8.85691 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.024865 B = 0.006095 C = 0.005584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.802604 B = 4593.189782 C = 5013.116352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C -0.197 4.197 3 C -0.148 4.148 4 C -0.147 4.147 5 C -0.171 4.171 6 C 0.148 3.852 7 H 0.073 0.927 8 C 0.106 3.894 9 H -0.006 1.006 10 N -0.819 5.819 11 C 0.031 3.969 12 H 0.003 0.997 13 C -0.558 4.558 14 H 0.045 0.955 15 C -0.029 4.029 16 N -0.942 5.942 17 Si 1.111 2.889 18 H -0.292 1.292 19 H -0.277 1.277 20 H -0.269 1.269 21 C 0.062 3.938 22 N -0.526 5.526 23 C 0.022 3.978 24 S 0.098 5.902 25 H 0.066 0.934 26 H 0.093 0.907 27 H 0.086 0.914 28 H 0.162 0.838 29 H 0.148 0.852 30 H 0.344 0.656 31 H 0.326 0.674 32 H 0.253 0.747 33 H 0.065 0.935 34 H 0.038 0.962 35 H 0.072 0.928 36 H 0.078 0.922 37 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.848 9.391 9.761 15.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.315 4.315 3 C -0.177 4.177 4 C -0.178 4.178 5 C -0.290 4.290 6 C 0.037 3.963 7 H 0.091 0.909 8 C -0.007 4.007 9 H 0.012 0.988 10 N -0.349 5.349 11 C 0.011 3.989 12 H 0.021 0.979 13 C -0.597 4.597 14 H 0.063 0.937 15 C -0.227 4.227 16 N -0.580 5.580 17 Si 0.934 3.066 18 H -0.218 1.218 19 H -0.203 1.203 20 H -0.194 1.194 21 C -0.065 4.065 22 N -0.250 5.250 23 C -0.126 4.126 24 S 0.362 5.638 25 H 0.085 0.915 26 H 0.111 0.889 27 H 0.105 0.895 28 H 0.179 0.821 29 H 0.166 0.834 30 H 0.158 0.842 31 H 0.138 0.862 32 H 0.063 0.937 33 H 0.083 0.917 34 H 0.056 0.944 35 H 0.090 0.910 36 H 0.097 0.903 37 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -6.771 6.767 8.919 13.084 hybrid contribution -0.010 2.451 0.587 2.520 sum -6.781 9.218 9.507 14.877 Atomic orbital electron populations 1.20389 0.85825 1.03297 1.04082 1.25070 1.01397 0.95647 1.09345 1.20181 0.92089 1.00203 1.05265 1.20281 0.97381 0.95242 1.04845 1.24456 0.97839 0.96752 1.09934 1.20698 0.89918 0.92324 0.93364 0.90909 1.22046 0.89474 0.97090 0.92074 0.98800 1.58715 1.37388 1.07571 1.31251 1.19748 0.95626 0.90989 0.92524 0.97873 1.21830 0.92932 1.48118 0.96791 0.93715 1.27023 1.03538 0.94121 0.97997 1.70942 0.98980 1.48649 1.39453 0.82984 0.72006 0.77380 0.74212 1.21783 1.20264 1.19430 1.23033 0.92792 0.95986 0.94691 1.64587 1.45526 1.12222 1.02659 1.22503 0.98737 1.01762 0.89620 1.84618 0.96562 1.10131 1.72458 0.91539 0.88869 0.89515 0.82080 0.83424 0.84152 0.86166 0.93719 0.91692 0.94389 0.90958 0.90300 0.95257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.44 10.38 71.23 0.74 -0.70 16 2 C -0.20 -5.22 6.51 24.59 0.16 -5.06 16 3 C -0.15 -3.76 10.05 21.22 0.21 -3.55 16 4 C -0.15 -4.28 10.04 21.22 0.21 -4.06 16 5 C -0.17 -5.92 5.26 24.59 0.13 -5.79 16 6 C 0.15 5.56 2.63 44.31 0.12 5.68 16 7 H 0.07 2.64 7.48 -2.39 -0.02 2.62 16 8 C 0.11 4.76 3.66 45.79 0.17 4.92 16 9 H -0.01 -0.30 7.69 -2.38 -0.02 -0.32 16 10 N -0.82 -34.27 8.44 -165.03 -1.39 -35.66 16 11 C 0.03 1.56 2.61 -10.33 -0.03 1.53 16 12 H 0.00 0.18 6.89 -2.38 -0.02 0.16 16 13 C -0.56 -30.15 6.71 25.60 0.17 -29.97 16 14 H 0.04 2.45 7.74 -2.91 -0.02 2.42 16 15 C -0.03 -1.62 5.25 84.65 0.44 -1.18 16 16 N -0.94 -56.64 13.64 21.45 0.29 -56.35 16 17 Si 1.11 49.56 29.90 68.60 2.05 51.61 16 18 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 19 H -0.28 -11.73 7.11 99.48 0.71 -11.02 16 20 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 21 C 0.06 2.70 5.99 86.65 0.52 3.22 16 22 N -0.53 -19.83 4.94 -888.45 -4.39 -24.21 16 23 C 0.02 0.66 9.40 127.69 1.20 1.86 16 24 S 0.10 3.29 23.05 -56.49 -1.30 1.99 16 25 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 26 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 27 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 28 H 0.16 3.07 8.06 -2.91 -0.02 3.05 16 29 H 0.15 3.71 8.06 -2.91 -0.02 3.69 16 30 H 0.34 15.82 7.87 -89.69 -0.71 15.11 16 31 H 0.33 11.49 8.96 -89.69 -0.80 10.69 16 32 H 0.25 15.67 6.73 -92.71 -0.62 15.05 16 33 H 0.06 2.78 8.14 -2.39 -0.02 2.76 16 34 H 0.04 1.67 7.81 -2.39 -0.02 1.65 16 35 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 36 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 37 H 0.03 0.86 8.00 -2.38 -0.02 0.84 16 Total: -1.00 -63.05 313.90 -0.98 -64.03 By element: Atomic # 1 Polarization: 31.99 SS G_CDS: -0.29 Total: 31.70 kcal Atomic # 6 Polarization: -37.15 SS G_CDS: 4.05 Total: -33.10 kcal Atomic # 7 Polarization: -110.74 SS G_CDS: -5.49 Total: -116.22 kcal Atomic # 14 Polarization: 49.56 SS G_CDS: 2.05 Total: 51.61 kcal Atomic # 16 Polarization: 3.29 SS G_CDS: -1.30 Total: 1.99 kcal Total: -63.05 -0.98 -64.03 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259909677.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.717 kcal (2) G-P(sol) polarization free energy of solvation -63.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.028 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds