Wall clock time and date at job start Mon Mar 30 2020 05:47:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46953 * 111.00345 * 2 1 4 4 C 1.53057 * 109.36561 * 176.81256 * 3 2 1 5 5 N 1.46956 * 109.36162 * 58.40148 * 4 3 2 6 6 C 1.46904 * 110.99512 * 176.81016 * 5 4 3 7 7 C 1.50704 * 109.46759 * 66.04916 * 6 5 4 8 8 C 1.33393 * 125.20195 * 90.00035 * 7 6 5 9 9 C 1.38417 * 114.91618 * 179.97438 * 8 7 6 10 10 C 1.33387 * 114.92449 * 359.97438 * 9 8 7 11 11 S 1.75878 * 109.59414 * 359.76013 * 10 9 8 12 12 C 1.46953 * 110.88107 * 300.67940 * 5 4 3 13 13 H 1.09001 * 109.49100 * 299.35273 * 12 5 4 14 14 C 1.50703 * 109.48879 * 179.31172 * 12 5 4 15 15 H 1.08004 * 119.99787 * 0.02562 * 14 12 5 16 16 C 1.37874 * 119.99974 * 179.97438 * 14 12 5 17 17 N 1.31509 * 120.00168 * 0.02562 * 16 14 12 18 18 Si 1.86804 * 119.99744 * 180.02562 * 16 14 12 19 19 H 1.48497 * 109.47273 * 60.00381 * 18 16 14 20 20 H 1.48501 * 109.46792 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.47002 * 300.00091 * 18 16 14 22 22 C 1.46956 * 110.99901 * 236.20036 * 2 1 3 23 23 H 1.08993 * 109.47238 * 183.79728 * 1 2 3 24 24 H 1.09001 * 109.46871 * 303.79957 * 1 2 3 25 25 H 1.08995 * 109.46630 * 63.79626 * 1 2 3 26 26 H 1.09002 * 109.48831 * 56.84832 * 3 2 1 27 27 H 1.09001 * 109.49100 * 296.78280 * 3 2 1 28 28 H 1.09002 * 109.48707 * 298.43698 * 4 3 2 29 29 H 1.09002 * 109.48655 * 178.37131 * 4 3 2 30 30 H 1.09002 * 109.46559 * 186.04726 * 6 5 4 31 31 H 1.08996 * 109.47349 * 306.04443 * 6 5 4 32 32 H 1.07998 * 122.53890 * 359.95176 * 8 7 6 33 33 H 1.08004 * 122.53972 * 180.02562 * 9 8 7 34 34 H 1.08003 * 125.20163 * 179.97438 * 10 9 8 35 35 H 0.96999 * 119.99968 * 179.97438 * 17 16 14 36 36 H 1.09007 * 109.48628 * 63.22067 * 22 2 1 37 37 H 1.09004 * 109.50811 * 303.17162 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9957 1.3719 0.0000 4 6 3.5236 1.3289 0.0803 5 7 4.0501 0.5657 -1.0598 6 6 5.5192 0.5657 -1.0598 7 6 6.0214 -0.1925 0.1419 8 6 6.2777 -1.5012 0.1734 9 6 6.7321 -1.9772 1.3911 10 6 6.8454 -1.0552 2.3483 11 16 6.3676 0.5144 1.7147 12 6 3.5234 -0.8062 -1.0598 13 1 3.8253 -1.3117 -0.1425 14 6 4.0690 -1.5542 -2.2489 15 1 4.7403 -1.0604 -2.9360 16 6 3.7120 -2.8692 -2.4592 17 7 2.8950 -3.4707 -1.6223 18 14 4.3889 -3.7966 -3.9327 19 1 5.8713 -3.8354 -3.8549 20 1 3.8563 -5.1828 -3.9324 21 1 3.9765 -3.1086 -5.1825 22 6 1.9957 -0.7632 -1.1401 23 1 -0.3633 -1.0253 0.0681 24 1 -0.3633 0.5717 0.8540 25 1 -0.3632 0.4538 -0.9220 26 1 1.6015 1.9128 0.8603 27 1 1.6938 1.8774 -0.9173 28 1 3.8255 0.8477 1.0106 29 1 3.9179 2.3447 0.0513 30 1 5.8824 0.0872 -1.9693 31 1 5.8825 1.5925 -1.0196 32 1 6.1406 -2.1408 -0.6860 33 1 6.9773 -3.0165 1.5537 34 1 7.1826 -1.2431 3.3570 35 1 2.6436 -4.3957 -1.7705 36 1 1.6937 -0.2820 -2.0704 37 1 1.6013 -1.7790 -1.1115 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259921284.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:28 Heat of formation + Delta-G solvation = 54.376447 kcal Electronic energy + Delta-G solvation = -19135.070791 eV Core-core repulsion = 16425.363490 eV Total energy + Delta-G solvation = -2709.707301 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 3.53 seconds Orbital eigenvalues (eV) -38.75063 -36.99161 -34.69329 -32.97375 -30.11645 -29.48024 -27.31813 -25.30220 -24.69302 -22.89979 -22.06657 -21.17784 -18.79926 -18.41586 -16.80295 -15.99951 -15.23292 -14.90642 -14.69149 -14.17728 -13.94162 -13.79323 -13.59153 -12.84805 -12.47537 -12.18002 -12.09779 -11.86580 -11.72539 -11.29622 -11.24118 -10.97289 -10.84193 -10.68886 -10.59272 -10.27124 -10.13061 -9.98806 -9.61688 -9.01530 -8.49695 -8.02132 -7.84915 -7.51201 -7.21884 -6.05379 -4.10327 1.58696 2.21094 2.54898 3.28221 3.34077 3.36369 3.43801 4.35898 4.81796 5.01374 5.28338 5.46374 5.57988 5.71864 5.76182 5.88991 5.95877 6.06874 6.09835 6.13906 6.27973 6.32552 6.36887 6.51821 6.61457 6.81035 6.85261 6.96165 7.06720 7.18427 7.35528 7.57131 7.73466 7.89653 8.00707 8.10240 8.27979 8.57666 8.96564 9.53982 11.00814 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.013884 B = 0.010384 C = 0.006981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2016.202654 B = 2695.887199 C = 4010.157530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.549 5.549 3 C 0.063 3.937 4 C 0.049 3.951 5 N -0.525 5.525 6 C 0.133 3.867 7 C -0.180 4.180 8 C -0.115 4.115 9 C -0.125 4.125 10 C -0.229 4.229 11 S 0.048 5.952 12 C 0.220 3.780 13 H 0.023 0.977 14 C -0.506 4.506 15 H 0.063 0.937 16 C 0.064 3.936 17 N -0.886 5.886 18 Si 0.891 3.109 19 H -0.276 1.276 20 H -0.288 1.288 21 H -0.277 1.277 22 C 0.066 3.934 23 H 0.063 0.937 24 H 0.053 0.947 25 H 0.015 0.985 26 H 0.061 0.939 27 H 0.030 0.970 28 H 0.042 0.958 29 H 0.059 0.941 30 H 0.101 0.899 31 H 0.061 0.939 32 H 0.154 0.846 33 H 0.132 0.868 34 H 0.153 0.847 35 H 0.262 0.738 36 H 0.014 0.986 37 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.203 6.244 5.054 8.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 N -0.274 5.274 3 C -0.066 4.066 4 C -0.080 4.080 5 N -0.247 5.247 6 C 0.003 3.997 7 C -0.299 4.299 8 C -0.145 4.145 9 C -0.156 4.156 10 C -0.364 4.364 11 S 0.309 5.691 12 C 0.113 3.887 13 H 0.041 0.959 14 C -0.545 4.545 15 H 0.081 0.919 16 C -0.138 4.138 17 N -0.524 5.524 18 Si 0.719 3.281 19 H -0.202 1.202 20 H -0.214 1.214 21 H -0.203 1.203 22 C -0.061 4.061 23 H 0.082 0.918 24 H 0.072 0.928 25 H 0.033 0.967 26 H 0.079 0.921 27 H 0.048 0.952 28 H 0.060 0.940 29 H 0.078 0.922 30 H 0.119 0.881 31 H 0.080 0.920 32 H 0.171 0.829 33 H 0.150 0.850 34 H 0.171 0.829 35 H 0.072 0.928 36 H 0.032 0.968 37 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 2.999 7.509 5.676 9.879 hybrid contribution 0.226 -2.091 -1.200 2.421 sum 3.225 5.419 4.477 7.733 Atomic orbital electron populations 1.22236 0.89161 1.01478 0.98863 1.62313 1.06266 1.12576 1.46265 1.22028 0.94906 0.90532 0.99151 1.22178 0.94347 0.97459 0.93987 1.62698 1.04468 1.18275 1.39309 1.20766 0.88713 0.96916 0.93308 1.25456 1.07300 0.98494 0.98633 1.20416 0.99871 0.94952 0.99275 1.20256 1.02004 1.00162 0.93171 1.25377 1.11627 0.96143 1.03268 1.83919 1.66055 1.11846 1.07271 1.19338 0.89890 0.82132 0.97313 0.95908 1.21040 1.28235 0.95608 1.09599 0.91917 1.24908 0.95170 0.97454 0.96261 1.69872 1.34127 1.12250 1.36170 0.86673 0.79313 0.78846 0.83288 1.20205 1.21386 1.20288 1.22515 0.97666 0.98575 0.87367 0.91777 0.92837 0.96694 0.92063 0.95213 0.94017 0.92237 0.88123 0.92047 0.82876 0.85048 0.82942 0.92805 0.96813 0.87503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.56 9.60 60.07 0.58 1.13 16 2 N -0.55 -11.58 4.97 -242.75 -1.21 -12.79 16 3 C 0.06 1.17 5.62 -3.77 -0.02 1.15 16 4 C 0.05 0.94 5.24 -3.76 -0.02 0.92 16 5 N -0.52 -11.13 4.73 -229.31 -1.08 -12.21 16 6 C 0.13 2.55 5.50 -4.97 -0.03 2.52 16 7 C -0.18 -3.41 4.31 -36.00 -0.15 -3.57 16 8 C -0.12 -2.28 8.35 -41.21 -0.34 -2.62 16 9 C -0.12 -2.18 10.18 -41.21 -0.42 -2.60 16 10 C -0.23 -3.65 11.23 29.04 0.33 -3.32 16 11 S 0.05 0.78 22.02 -107.50 -2.37 -1.59 16 12 C 0.22 5.33 1.35 -68.81 -0.09 5.24 16 13 H 0.02 0.64 6.34 -51.93 -0.33 0.31 16 14 C -0.51 -12.92 6.76 -34.44 -0.23 -13.15 16 15 H 0.06 1.60 6.45 -52.48 -0.34 1.26 16 16 C 0.06 1.67 5.30 -17.82 -0.09 1.58 16 17 N -0.89 -24.10 11.35 55.43 0.63 -23.47 16 18 Si 0.89 20.38 29.54 -169.99 -5.02 15.36 16 19 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 20 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 21 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 22 C 0.07 1.60 4.66 -3.77 -0.02 1.58 16 23 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 24 H 0.05 0.81 8.13 -51.93 -0.42 0.39 16 25 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 26 H 0.06 1.00 8.13 -51.93 -0.42 0.58 16 27 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.04 0.84 6.33 -51.93 -0.33 0.52 16 29 H 0.06 1.00 8.11 -51.93 -0.42 0.58 16 30 H 0.10 2.01 6.36 -51.93 -0.33 1.68 16 31 H 0.06 1.03 8.10 -51.93 -0.42 0.61 16 32 H 0.15 3.35 7.10 -52.49 -0.37 2.98 16 33 H 0.13 2.05 8.06 -52.48 -0.42 1.62 16 34 H 0.15 1.99 8.06 -52.48 -0.42 1.56 16 35 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 36 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 37 H 0.11 2.86 6.13 -51.93 -0.32 2.54 16 LS Contribution 300.18 15.07 4.52 4.52 Total: -1.00 -27.15 300.18 -10.42 -37.58 By element: Atomic # 1 Polarization: 9.12 SS G_CDS: -5.37 Total: 3.74 kcal Atomic # 6 Polarization: -10.62 SS G_CDS: -0.52 Total: -11.14 kcal Atomic # 7 Polarization: -46.81 SS G_CDS: -1.66 Total: -48.47 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.36 kcal Atomic # 16 Polarization: 0.78 SS G_CDS: -2.37 Total: -1.59 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -27.15 -10.42 -37.58 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259921284.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.954 kcal (2) G-P(sol) polarization free energy of solvation -27.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.577 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.53 seconds