Wall clock time and date at job start Mon Mar 30 2020 05:47:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46953 * 111.00345 * 2 1 4 4 C 1.53057 * 109.36561 * 176.81256 * 3 2 1 5 5 N 1.46956 * 109.36162 * 58.40148 * 4 3 2 6 6 C 1.46904 * 110.99512 * 176.81016 * 5 4 3 7 7 C 1.50704 * 109.46759 * 66.04916 * 6 5 4 8 8 C 1.33393 * 125.20195 * 90.00035 * 7 6 5 9 9 C 1.38417 * 114.91618 * 179.97438 * 8 7 6 10 10 C 1.33387 * 114.92449 * 359.97438 * 9 8 7 11 11 S 1.75878 * 109.59414 * 359.76013 * 10 9 8 12 12 C 1.46953 * 110.88107 * 300.67940 * 5 4 3 13 13 H 1.09001 * 109.49100 * 299.35273 * 12 5 4 14 14 C 1.50703 * 109.48879 * 179.31172 * 12 5 4 15 15 H 1.08004 * 119.99787 * 0.02562 * 14 12 5 16 16 C 1.37874 * 119.99974 * 179.97438 * 14 12 5 17 17 N 1.31509 * 120.00168 * 0.02562 * 16 14 12 18 18 Si 1.86804 * 119.99744 * 180.02562 * 16 14 12 19 19 H 1.48497 * 109.47273 * 60.00381 * 18 16 14 20 20 H 1.48501 * 109.46792 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.47002 * 300.00091 * 18 16 14 22 22 C 1.46956 * 110.99901 * 236.20036 * 2 1 3 23 23 H 1.08993 * 109.47238 * 183.79728 * 1 2 3 24 24 H 1.09001 * 109.46871 * 303.79957 * 1 2 3 25 25 H 1.08995 * 109.46630 * 63.79626 * 1 2 3 26 26 H 1.09002 * 109.48831 * 56.84832 * 3 2 1 27 27 H 1.09001 * 109.49100 * 296.78280 * 3 2 1 28 28 H 1.09002 * 109.48707 * 298.43698 * 4 3 2 29 29 H 1.09002 * 109.48655 * 178.37131 * 4 3 2 30 30 H 1.09002 * 109.46559 * 186.04726 * 6 5 4 31 31 H 1.08996 * 109.47349 * 306.04443 * 6 5 4 32 32 H 1.07998 * 122.53890 * 359.95176 * 8 7 6 33 33 H 1.08004 * 122.53972 * 180.02562 * 9 8 7 34 34 H 1.08003 * 125.20163 * 179.97438 * 10 9 8 35 35 H 0.96999 * 119.99968 * 179.97438 * 17 16 14 36 36 H 1.09007 * 109.48628 * 63.22067 * 22 2 1 37 37 H 1.09004 * 109.50811 * 303.17162 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9957 1.3719 0.0000 4 6 3.5236 1.3289 0.0803 5 7 4.0501 0.5657 -1.0598 6 6 5.5192 0.5657 -1.0598 7 6 6.0214 -0.1925 0.1419 8 6 6.2777 -1.5012 0.1734 9 6 6.7321 -1.9772 1.3911 10 6 6.8454 -1.0552 2.3483 11 16 6.3676 0.5144 1.7147 12 6 3.5234 -0.8062 -1.0598 13 1 3.8253 -1.3117 -0.1425 14 6 4.0690 -1.5542 -2.2489 15 1 4.7403 -1.0604 -2.9360 16 6 3.7120 -2.8692 -2.4592 17 7 2.8950 -3.4707 -1.6223 18 14 4.3889 -3.7966 -3.9327 19 1 5.8713 -3.8354 -3.8549 20 1 3.8563 -5.1828 -3.9324 21 1 3.9765 -3.1086 -5.1825 22 6 1.9957 -0.7632 -1.1401 23 1 -0.3633 -1.0253 0.0681 24 1 -0.3633 0.5717 0.8540 25 1 -0.3632 0.4538 -0.9220 26 1 1.6015 1.9128 0.8603 27 1 1.6938 1.8774 -0.9173 28 1 3.8255 0.8477 1.0106 29 1 3.9179 2.3447 0.0513 30 1 5.8824 0.0872 -1.9693 31 1 5.8825 1.5925 -1.0196 32 1 6.1406 -2.1408 -0.6860 33 1 6.9773 -3.0165 1.5537 34 1 7.1826 -1.2431 3.3570 35 1 2.6436 -4.3957 -1.7705 36 1 1.6937 -0.2820 -2.0704 37 1 1.6013 -1.7790 -1.1115 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259921284.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:22 Heat of formation + Delta-G solvation = 36.542909 kcal Electronic energy + Delta-G solvation = -19135.844111 eV Core-core repulsion = 16425.363490 eV Total energy + Delta-G solvation = -2710.480622 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.38334 -38.44941 -36.27093 -34.91622 -31.60878 -31.26376 -28.82320 -27.20196 -26.19839 -24.41749 -23.70698 -22.80458 -20.46629 -19.89120 -18.52017 -17.67224 -16.94270 -16.46423 -16.23822 -15.80205 -15.62875 -15.38372 -15.30089 -14.42703 -14.02857 -13.79057 -13.55364 -13.39247 -13.16273 -12.88753 -12.82736 -12.69495 -12.59559 -12.39755 -12.14020 -12.04581 -11.80251 -11.58678 -11.33614 -10.89027 -10.48354 -9.45013 -9.20329 -9.15203 -8.91721 -8.06596 -6.16601 0.20787 0.86688 1.17184 1.43183 1.44386 1.50957 1.99641 2.43509 3.14093 3.32270 3.44904 4.07181 4.22371 4.26683 4.32740 4.42211 4.50614 4.60246 4.68114 4.75639 4.78803 4.86426 4.92551 4.97270 4.97468 5.09887 5.17616 5.37833 5.49427 5.61890 5.68520 5.72243 5.77412 6.13389 6.25810 6.33395 6.50003 6.75881 6.96783 7.50903 8.98762 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.013884 B = 0.010384 C = 0.006981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2016.202654 B = 2695.887199 C = 4010.157530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.565 5.565 3 C 0.062 3.938 4 C 0.049 3.951 5 N -0.533 5.533 6 C 0.134 3.866 7 C -0.202 4.202 8 C -0.133 4.133 9 C -0.148 4.148 10 C -0.216 4.216 11 S 0.096 5.904 12 C 0.234 3.766 13 H -0.013 1.013 14 C -0.509 4.509 15 H 0.058 0.942 16 C 0.023 3.977 17 N -0.913 5.913 18 Si 0.946 3.054 19 H -0.271 1.271 20 H -0.288 1.288 21 H -0.275 1.275 22 C 0.080 3.920 23 H 0.055 0.945 24 H 0.085 0.915 25 H 0.019 0.981 26 H 0.094 0.906 27 H 0.028 0.972 28 H 0.031 0.969 29 H 0.089 0.911 30 H 0.082 0.918 31 H 0.089 0.911 32 H 0.120 0.880 33 H 0.144 0.856 34 H 0.188 0.812 35 H 0.260 0.740 36 H -0.006 1.006 37 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.662 7.939 6.350 10.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 N -0.290 5.290 3 C -0.066 4.066 4 C -0.080 4.080 5 N -0.256 5.256 6 C 0.004 3.996 7 C -0.320 4.320 8 C -0.164 4.164 9 C -0.179 4.179 10 C -0.352 4.352 11 S 0.358 5.642 12 C 0.127 3.873 13 H 0.005 0.995 14 C -0.548 4.548 15 H 0.076 0.924 16 C -0.177 4.177 17 N -0.552 5.552 18 Si 0.773 3.227 19 H -0.196 1.196 20 H -0.214 1.214 21 H -0.201 1.201 22 C -0.049 4.049 23 H 0.074 0.926 24 H 0.104 0.896 25 H 0.037 0.963 26 H 0.112 0.888 27 H 0.047 0.953 28 H 0.050 0.950 29 H 0.108 0.892 30 H 0.100 0.900 31 H 0.107 0.893 32 H 0.138 0.862 33 H 0.162 0.838 34 H 0.205 0.795 35 H 0.069 0.931 36 H 0.012 0.988 37 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 3.465 9.229 6.973 12.075 hybrid contribution 0.097 -2.548 -1.527 2.972 sum 3.562 6.681 5.446 9.326 Atomic orbital electron populations 1.22290 0.87129 1.01705 1.00448 1.62258 1.08317 1.13999 1.44417 1.22149 0.94691 0.89243 1.00521 1.22285 0.94772 0.98363 0.92532 1.62635 1.05798 1.16452 1.40744 1.20726 0.87598 0.98287 0.92993 1.25423 1.07725 0.98514 1.00354 1.20333 1.01385 0.95277 0.99438 1.20345 1.03295 1.01425 0.92785 1.25823 1.09528 0.95534 1.04293 1.83647 1.64934 1.11157 1.04509 1.18964 0.89936 0.83483 0.94926 0.99495 1.21241 1.27776 0.95978 1.09839 0.92432 1.25536 0.95449 0.98262 0.98421 1.70007 1.35323 1.12239 1.37675 0.85792 0.78914 0.77545 0.80472 1.19603 1.21391 1.20087 1.22139 0.97686 0.97260 0.87780 0.92608 0.89648 0.96264 0.88756 0.95333 0.95039 0.89247 0.90001 0.89326 0.86232 0.83828 0.79461 0.93117 0.98768 0.90642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.10 9.60 127.69 1.23 2.33 16 2 N -0.57 -23.43 4.97 -921.93 -4.58 -28.01 16 3 C 0.06 2.18 5.62 86.31 0.49 2.66 16 4 C 0.05 1.77 5.24 86.31 0.45 2.22 16 5 N -0.53 -22.48 4.73 -879.40 -4.16 -26.63 16 6 C 0.13 5.08 5.50 85.56 0.47 5.55 16 7 C -0.20 -7.56 4.31 24.59 0.11 -7.46 16 8 C -0.13 -5.42 8.35 21.22 0.18 -5.24 16 9 C -0.15 -5.10 10.18 21.21 0.22 -4.88 16 10 C -0.22 -6.36 11.23 66.72 0.75 -5.61 16 11 S 0.10 2.89 22.02 -56.49 -1.24 1.64 16 12 C 0.23 11.66 1.35 44.18 0.06 11.72 16 13 H -0.01 -0.71 6.34 -2.39 -0.02 -0.72 16 14 C -0.51 -26.93 6.76 25.60 0.17 -26.76 16 15 H 0.06 3.03 6.45 -2.91 -0.02 3.02 16 16 C 0.02 1.22 5.30 84.65 0.45 1.67 16 17 N -0.91 -51.59 11.35 21.45 0.24 -51.35 16 18 Si 0.95 42.94 29.54 68.60 2.03 44.96 16 19 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 20 H -0.29 -13.00 7.11 99.48 0.71 -12.29 16 21 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 22 C 0.08 3.95 4.66 86.31 0.40 4.35 16 23 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 24 H 0.08 2.35 8.13 -2.39 -0.02 2.33 16 25 H 0.02 0.63 8.14 -2.39 -0.02 0.61 16 26 H 0.09 2.70 8.13 -2.39 -0.02 2.68 16 27 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 28 H 0.03 1.21 6.33 -2.39 -0.02 1.20 16 29 H 0.09 2.68 8.11 -2.39 -0.02 2.67 16 30 H 0.08 3.36 6.36 -2.39 -0.02 3.34 16 31 H 0.09 2.82 8.10 -2.39 -0.02 2.80 16 32 H 0.12 5.58 7.10 -2.91 -0.02 5.56 16 33 H 0.14 4.44 8.06 -2.91 -0.02 4.41 16 34 H 0.19 4.12 8.06 -2.91 -0.02 4.10 16 35 H 0.26 14.15 8.31 -92.71 -0.77 13.38 16 36 H -0.01 -0.31 8.14 -2.38 -0.02 -0.33 16 37 H 0.08 4.21 6.13 -2.38 -0.01 4.20 16 Total: -1.00 -60.10 300.18 -1.69 -61.80 By element: Atomic # 1 Polarization: 15.97 SS G_CDS: 1.05 Total: 17.02 kcal Atomic # 6 Polarization: -24.40 SS G_CDS: 4.97 Total: -19.43 kcal Atomic # 7 Polarization: -97.50 SS G_CDS: -8.49 Total: -105.99 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 2.03 Total: 44.96 kcal Atomic # 16 Polarization: 2.89 SS G_CDS: -1.24 Total: 1.64 kcal Total: -60.10 -1.69 -61.80 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259921284.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.341 kcal (2) G-P(sol) polarization free energy of solvation -60.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.798 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds