Wall clock time and date at job start Mon Mar 30 2020 05:47:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46953 * 111.00184 * 2 1 4 4 C 1.53049 * 109.36796 * 183.18827 * 3 2 1 5 5 N 1.46955 * 109.36251 * 301.59718 * 4 3 2 6 6 C 1.46898 * 111.00148 * 183.18393 * 5 4 3 7 7 C 1.50706 * 109.46915 * 46.20320 * 6 5 4 8 8 C 1.33380 * 125.20446 * 89.71525 * 7 6 5 9 9 C 1.38424 * 114.91979 * 179.85799 * 8 7 6 10 10 C 1.33387 * 114.92317 * 0.43559 * 9 8 7 11 11 S 1.75886 * 109.59281 * 359.76596 * 10 9 8 12 12 C 1.46961 * 110.88199 * 59.31598 * 5 4 3 13 13 H 1.09009 * 109.48733 * 60.64914 * 12 5 4 14 14 C 1.50699 * 109.48866 * 180.68891 * 12 5 4 15 15 H 1.07995 * 120.00323 * 0.02562 * 14 12 5 16 16 C 1.37877 * 119.99952 * 180.02562 * 14 12 5 17 17 N 1.31516 * 119.99739 * 0.02562 * 16 14 12 18 18 Si 1.86794 * 120.00153 * 180.02562 * 16 14 12 19 19 H 1.48504 * 109.47152 * 89.99958 * 18 16 14 20 20 H 1.48499 * 109.47491 * 210.00004 * 18 16 14 21 21 H 1.48500 * 109.47455 * 330.00383 * 18 16 14 22 22 C 1.46961 * 110.99788 * 123.79445 * 2 1 3 23 23 H 1.09007 * 109.47271 * 296.20314 * 1 2 3 24 24 H 1.09003 * 109.46838 * 56.20156 * 1 2 3 25 25 H 1.08997 * 109.47517 * 176.20278 * 1 2 3 26 26 H 1.09007 * 109.48883 * 303.15180 * 3 2 1 27 27 H 1.09001 * 109.49027 * 63.19782 * 3 2 1 28 28 H 1.08992 * 109.49418 * 181.62834 * 4 3 2 29 29 H 1.09005 * 109.48719 * 61.56102 * 4 3 2 30 30 H 1.09003 * 109.47552 * 286.20318 * 6 5 4 31 31 H 1.09004 * 109.47512 * 166.19582 * 6 5 4 32 32 H 1.08001 * 122.54115 * 0.02562 * 8 7 6 33 33 H 1.08004 * 122.54250 * 180.19862 * 9 8 7 34 34 H 1.07997 * 125.20749 * 179.75076 * 10 9 8 35 35 H 0.97003 * 119.99408 * 180.02562 * 17 16 14 36 36 H 1.09004 * 109.48381 * 56.84576 * 22 2 1 37 37 H 1.08996 * 109.48896 * 296.77824 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9957 1.3719 0.0000 4 6 3.5235 1.3291 -0.0803 5 7 4.0501 0.5659 1.0598 6 6 5.5191 0.5658 1.0598 7 6 6.0215 1.9651 0.8131 8 6 6.2727 2.8701 1.7602 9 6 6.7308 4.0903 1.2940 10 6 6.8429 4.1793 -0.0321 11 16 6.3589 2.6570 -0.7684 12 6 3.5234 -0.8061 1.0599 13 1 3.8253 -1.3116 0.1425 14 6 4.0690 -1.5540 2.2490 15 1 4.7396 -1.0600 2.9364 16 6 3.7121 -2.8690 2.4593 17 7 2.8958 -3.4708 1.6219 18 14 4.3878 -3.7959 3.9336 19 1 3.4722 -3.6220 5.0898 20 1 4.4985 -5.2393 3.6027 21 1 5.7299 -3.2633 4.2806 22 6 1.9956 -0.7631 1.1402 23 1 -0.3634 0.4538 0.9221 24 1 -0.3633 0.5717 -0.8540 25 1 -0.3634 -1.0254 -0.0681 26 1 1.6014 1.9128 -0.8603 27 1 1.6935 1.8775 0.9172 28 1 3.9178 2.3447 -0.0513 29 1 3.8254 0.8478 -1.0106 30 1 5.8824 -0.0948 0.2726 31 1 5.8824 0.2144 2.0256 32 1 6.1320 2.6654 2.8112 33 1 6.9751 4.9097 1.9539 34 1 7.1792 5.0525 -0.5714 35 1 2.6444 -4.3959 1.7701 36 1 1.6012 -1.7789 1.1111 37 1 1.6937 -0.2819 2.0704 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259921287.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:38 Heat of formation + Delta-G solvation = 54.360399 kcal Electronic energy + Delta-G solvation = -18613.204861 eV Core-core repulsion = 15903.496864 eV Total energy + Delta-G solvation = -2709.707997 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -38.65621 -37.37778 -34.76510 -33.03015 -30.31045 -29.69272 -27.36917 -25.28440 -24.86168 -23.26261 -21.82363 -21.30054 -19.10460 -18.47010 -16.82176 -16.43965 -15.39373 -15.21371 -14.49845 -14.19117 -13.89033 -13.67878 -13.54746 -13.45986 -12.65855 -12.48277 -12.23356 -11.97983 -11.87358 -11.40905 -11.06848 -11.02704 -10.97105 -10.75388 -10.65086 -10.47009 -10.16711 -10.06059 -9.65551 -9.05765 -8.50949 -8.37260 -8.18330 -7.51331 -7.18666 -6.07714 -4.13480 1.24871 1.87932 2.25729 3.01100 3.27867 3.34832 3.37542 4.35836 4.81399 4.99673 5.15378 5.24440 5.28290 5.66982 5.71078 5.81572 5.83020 5.92814 6.02291 6.06047 6.08066 6.34601 6.37439 6.39542 6.47521 6.55085 6.63479 6.79608 6.81448 6.93543 7.30565 7.48545 7.72319 7.88134 7.97744 8.07327 8.25528 8.54382 8.93852 9.52355 10.98864 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.017598 B = 0.007081 C = 0.005426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1590.695046 B = 3953.061977 C = 5158.928024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.550 5.550 3 C 0.063 3.937 4 C 0.053 3.947 5 N -0.529 5.529 6 C 0.134 3.866 7 C -0.146 4.146 8 C -0.139 4.139 9 C -0.130 4.130 10 C -0.229 4.229 11 S 0.078 5.922 12 C 0.223 3.777 13 H 0.010 0.990 14 C -0.511 4.511 15 H 0.065 0.935 16 C 0.062 3.938 17 N -0.889 5.889 18 Si 0.897 3.103 19 H -0.280 1.280 20 H -0.287 1.287 21 H -0.274 1.274 22 C 0.069 3.931 23 H 0.015 0.985 24 H 0.053 0.947 25 H 0.064 0.936 26 H 0.061 0.939 27 H 0.030 0.970 28 H 0.067 0.933 29 H 0.029 0.971 30 H 0.038 0.962 31 H 0.099 0.901 32 H 0.140 0.860 33 H 0.134 0.866 34 H 0.157 0.843 35 H 0.262 0.738 36 H 0.108 0.892 37 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.233 11.579 -3.081 12.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 N -0.275 5.275 3 C -0.066 4.066 4 C -0.076 4.076 5 N -0.254 5.254 6 C 0.005 3.995 7 C -0.264 4.264 8 C -0.169 4.169 9 C -0.161 4.161 10 C -0.364 4.364 11 S 0.341 5.659 12 C 0.117 3.883 13 H 0.028 0.972 14 C -0.550 4.550 15 H 0.083 0.917 16 C -0.140 4.140 17 N -0.527 5.527 18 Si 0.725 3.275 19 H -0.207 1.207 20 H -0.212 1.212 21 H -0.198 1.198 22 C -0.059 4.059 23 H 0.033 0.967 24 H 0.072 0.928 25 H 0.083 0.917 26 H 0.080 0.920 27 H 0.049 0.951 28 H 0.086 0.914 29 H 0.047 0.953 30 H 0.057 0.943 31 H 0.117 0.883 32 H 0.158 0.842 33 H 0.152 0.848 34 H 0.175 0.825 35 H 0.072 0.928 36 H 0.126 0.874 37 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges 3.054 10.858 -4.601 12.181 hybrid contribution 0.310 0.087 2.189 2.213 sum 3.363 10.944 -2.411 11.701 Atomic orbital electron populations 1.22239 0.89091 1.01510 0.98915 1.62330 1.06355 1.12650 1.46189 1.22036 0.94895 0.90456 0.99215 1.22219 0.94370 0.98156 0.92841 1.62442 1.04569 1.18101 1.40335 1.20533 0.89388 0.87230 1.02376 1.24834 1.05548 1.01529 0.94480 1.20129 1.03151 0.92725 1.00866 1.20159 1.02643 0.98529 0.94734 1.25507 1.11057 1.01772 0.98106 1.84353 1.64832 1.06525 1.10224 1.19315 0.90450 0.81779 0.96752 0.97206 1.21121 1.28442 0.95715 1.09713 0.91679 1.24957 0.95066 0.97442 0.96520 1.69885 1.34294 1.12299 1.36214 0.86507 0.79423 0.78888 0.82670 1.20653 1.21244 1.19837 1.22474 0.97161 0.98657 0.87564 0.96654 0.92801 0.91728 0.92043 0.95129 0.91435 0.95296 0.94340 0.88279 0.84185 0.84809 0.82518 0.92767 0.87393 0.96551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.55 9.60 60.07 0.58 1.13 16 2 N -0.55 -11.61 4.97 -242.75 -1.21 -12.82 16 3 C 0.06 1.19 5.62 -3.77 -0.02 1.17 16 4 C 0.05 1.04 4.77 -3.77 -0.02 1.02 16 5 N -0.53 -11.46 4.66 -229.31 -1.07 -12.53 16 6 C 0.13 2.64 5.20 -4.97 -0.03 2.61 16 7 C -0.15 -2.43 4.45 -36.00 -0.16 -2.59 16 8 C -0.14 -2.09 10.05 -41.21 -0.41 -2.50 16 9 C -0.13 -1.67 10.18 -41.21 -0.42 -2.09 16 10 C -0.23 -2.85 11.23 29.04 0.33 -2.52 16 11 S 0.08 1.13 21.78 -107.50 -2.34 -1.21 16 12 C 0.22 5.61 1.90 -68.81 -0.13 5.47 16 13 H 0.01 0.29 8.14 -51.92 -0.42 -0.13 16 14 C -0.51 -13.57 8.02 -34.44 -0.28 -13.85 16 15 H 0.07 1.71 6.50 -52.49 -0.34 1.37 16 16 C 0.06 1.67 5.30 -17.82 -0.09 1.58 16 17 N -0.89 -24.70 11.35 55.43 0.63 -24.07 16 18 Si 0.90 20.80 29.54 -169.99 -5.02 15.77 16 19 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 20 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 21 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 22 C 0.07 1.67 4.66 -3.77 -0.02 1.65 16 23 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 24 H 0.05 0.82 8.13 -51.93 -0.42 0.39 16 25 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 26 H 0.06 1.02 8.13 -51.93 -0.42 0.59 16 27 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.07 1.21 5.75 -51.93 -0.30 0.91 16 29 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.04 0.79 8.08 -51.93 -0.42 0.37 16 31 H 0.10 2.02 6.68 -51.93 -0.35 1.67 16 32 H 0.14 2.03 8.06 -52.49 -0.42 1.61 16 33 H 0.13 1.38 8.06 -52.48 -0.42 0.96 16 34 H 0.16 1.52 8.06 -52.49 -0.42 1.10 16 35 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 36 H 0.11 2.89 6.13 -51.93 -0.32 2.57 16 37 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 LS Contribution 305.34 15.07 4.60 4.60 Total: -1.00 -27.84 305.34 -10.59 -38.43 By element: Atomic # 1 Polarization: 6.27 SS G_CDS: -5.51 Total: 0.76 kcal Atomic # 6 Polarization: -8.25 SS G_CDS: -0.68 Total: -8.93 kcal Atomic # 7 Polarization: -47.78 SS G_CDS: -1.65 Total: -49.42 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.77 kcal Atomic # 16 Polarization: 1.13 SS G_CDS: -2.34 Total: -1.21 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -27.84 -10.59 -38.43 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259921287.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.787 kcal (2) G-P(sol) polarization free energy of solvation -27.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.426 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds