Wall clock time and date at job start Mon Mar 30 2020 05:47:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46953 * 111.00184 * 2 1 4 4 C 1.53049 * 109.36796 * 183.18827 * 3 2 1 5 5 N 1.46955 * 109.36251 * 301.59718 * 4 3 2 6 6 C 1.46898 * 111.00148 * 183.18393 * 5 4 3 7 7 C 1.50706 * 109.46915 * 46.20320 * 6 5 4 8 8 C 1.33380 * 125.20446 * 89.71525 * 7 6 5 9 9 C 1.38424 * 114.91979 * 179.85799 * 8 7 6 10 10 C 1.33387 * 114.92317 * 0.43559 * 9 8 7 11 11 S 1.75886 * 109.59281 * 359.76596 * 10 9 8 12 12 C 1.46961 * 110.88199 * 59.31598 * 5 4 3 13 13 H 1.09009 * 109.48733 * 60.64914 * 12 5 4 14 14 C 1.50699 * 109.48866 * 180.68891 * 12 5 4 15 15 H 1.07995 * 120.00323 * 0.02562 * 14 12 5 16 16 C 1.37877 * 119.99952 * 180.02562 * 14 12 5 17 17 N 1.31516 * 119.99739 * 0.02562 * 16 14 12 18 18 Si 1.86794 * 120.00153 * 180.02562 * 16 14 12 19 19 H 1.48504 * 109.47152 * 89.99958 * 18 16 14 20 20 H 1.48499 * 109.47491 * 210.00004 * 18 16 14 21 21 H 1.48500 * 109.47455 * 330.00383 * 18 16 14 22 22 C 1.46961 * 110.99788 * 123.79445 * 2 1 3 23 23 H 1.09007 * 109.47271 * 296.20314 * 1 2 3 24 24 H 1.09003 * 109.46838 * 56.20156 * 1 2 3 25 25 H 1.08997 * 109.47517 * 176.20278 * 1 2 3 26 26 H 1.09007 * 109.48883 * 303.15180 * 3 2 1 27 27 H 1.09001 * 109.49027 * 63.19782 * 3 2 1 28 28 H 1.08992 * 109.49418 * 181.62834 * 4 3 2 29 29 H 1.09005 * 109.48719 * 61.56102 * 4 3 2 30 30 H 1.09003 * 109.47552 * 286.20318 * 6 5 4 31 31 H 1.09004 * 109.47512 * 166.19582 * 6 5 4 32 32 H 1.08001 * 122.54115 * 0.02562 * 8 7 6 33 33 H 1.08004 * 122.54250 * 180.19862 * 9 8 7 34 34 H 1.07997 * 125.20749 * 179.75076 * 10 9 8 35 35 H 0.97003 * 119.99408 * 180.02562 * 17 16 14 36 36 H 1.09004 * 109.48381 * 56.84576 * 22 2 1 37 37 H 1.08996 * 109.48896 * 296.77824 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9957 1.3719 0.0000 4 6 3.5235 1.3291 -0.0803 5 7 4.0501 0.5659 1.0598 6 6 5.5191 0.5658 1.0598 7 6 6.0215 1.9651 0.8131 8 6 6.2727 2.8701 1.7602 9 6 6.7308 4.0903 1.2940 10 6 6.8429 4.1793 -0.0321 11 16 6.3589 2.6570 -0.7684 12 6 3.5234 -0.8061 1.0599 13 1 3.8253 -1.3116 0.1425 14 6 4.0690 -1.5540 2.2490 15 1 4.7396 -1.0600 2.9364 16 6 3.7121 -2.8690 2.4593 17 7 2.8958 -3.4708 1.6219 18 14 4.3878 -3.7959 3.9336 19 1 3.4722 -3.6220 5.0898 20 1 4.4985 -5.2393 3.6027 21 1 5.7299 -3.2633 4.2806 22 6 1.9956 -0.7631 1.1402 23 1 -0.3634 0.4538 0.9221 24 1 -0.3633 0.5717 -0.8540 25 1 -0.3634 -1.0254 -0.0681 26 1 1.6014 1.9128 -0.8603 27 1 1.6935 1.8775 0.9172 28 1 3.9178 2.3447 -0.0513 29 1 3.8254 0.8478 -1.0106 30 1 5.8824 -0.0948 0.2726 31 1 5.8824 0.2144 2.0256 32 1 6.1320 2.6654 2.8112 33 1 6.9751 4.9097 1.9539 34 1 7.1792 5.0525 -0.5714 35 1 2.6444 -4.3959 1.7701 36 1 1.6012 -1.7789 1.1111 37 1 1.6937 -0.2819 2.0704 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259921287.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:33 Heat of formation + Delta-G solvation = 35.946264 kcal Electronic energy + Delta-G solvation = -18614.003358 eV Core-core repulsion = 15903.496864 eV Total energy + Delta-G solvation = -2710.506494 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 2.88 seconds Orbital eigenvalues (eV) -40.30063 -38.61498 -36.36237 -35.00930 -31.73373 -31.48601 -28.82299 -27.26105 -26.24975 -24.70782 -23.44934 -22.89616 -20.67333 -19.82473 -18.56022 -17.91742 -17.20317 -16.46197 -16.17001 -15.84115 -15.49542 -15.39954 -15.17098 -15.02979 -14.16487 -13.95592 -13.54489 -13.31108 -13.19910 -12.97716 -12.85566 -12.65760 -12.55930 -12.41608 -12.33570 -12.11167 -11.92357 -11.62283 -11.38200 -10.97523 -10.55844 -9.58957 -9.32041 -9.19253 -8.96278 -8.14150 -6.27418 0.12272 0.73887 1.16449 1.42380 1.42952 1.53312 1.91134 2.40586 3.07053 3.27147 3.37610 3.86262 4.14579 4.28489 4.29400 4.34967 4.42794 4.53953 4.62065 4.69930 4.73118 4.80289 4.84162 4.88584 4.95773 4.99949 5.09434 5.29003 5.37645 5.48665 5.54329 5.66054 5.67637 6.05149 6.19343 6.26350 6.43700 6.66533 6.86559 7.42340 8.91898 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.017598 B = 0.007081 C = 0.005426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1590.695046 B = 3953.061977 C = 5158.928024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.566 5.566 3 C 0.063 3.937 4 C 0.058 3.942 5 N -0.534 5.534 6 C 0.143 3.857 7 C -0.184 4.184 8 C -0.129 4.129 9 C -0.137 4.137 10 C -0.205 4.205 11 S 0.071 5.929 12 C 0.231 3.769 13 H -0.035 1.035 14 C -0.526 4.526 15 H 0.062 0.938 16 C 0.016 3.984 17 N -0.916 5.916 18 Si 0.961 3.039 19 H -0.275 1.275 20 H -0.283 1.283 21 H -0.267 1.267 22 C 0.086 3.914 23 H 0.020 0.980 24 H 0.086 0.914 25 H 0.058 0.942 26 H 0.096 0.904 27 H 0.029 0.971 28 H 0.088 0.912 29 H 0.016 0.984 30 H 0.017 0.983 31 H 0.082 0.918 32 H 0.140 0.860 33 H 0.167 0.833 34 H 0.193 0.807 35 H 0.263 0.737 36 H 0.079 0.921 37 H 0.000 1.000 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.679 14.115 -2.989 14.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 N -0.291 5.291 3 C -0.065 4.065 4 C -0.070 4.070 5 N -0.259 5.259 6 C 0.013 3.987 7 C -0.301 4.301 8 C -0.160 4.160 9 C -0.167 4.167 10 C -0.340 4.340 11 S 0.334 5.666 12 C 0.124 3.876 13 H -0.018 1.018 14 C -0.565 4.565 15 H 0.080 0.920 16 C -0.183 4.183 17 N -0.555 5.555 18 Si 0.786 3.214 19 H -0.201 1.201 20 H -0.209 1.209 21 H -0.192 1.192 22 C -0.043 4.043 23 H 0.039 0.961 24 H 0.105 0.895 25 H 0.077 0.923 26 H 0.114 0.886 27 H 0.047 0.953 28 H 0.106 0.894 29 H 0.034 0.966 30 H 0.035 0.965 31 H 0.101 0.899 32 H 0.158 0.842 33 H 0.184 0.816 34 H 0.210 0.790 35 H 0.073 0.927 36 H 0.097 0.903 37 H 0.018 0.982 Dipole moment (debyes) X Y Z Total from point charges 3.499 13.415 -4.517 14.581 hybrid contribution 0.206 -0.606 2.104 2.199 sum 3.705 12.809 -2.413 13.550 Atomic orbital electron populations 1.22305 0.86781 1.01918 1.00587 1.62266 1.08611 1.13844 1.44349 1.22147 0.94372 0.89384 1.00613 1.22255 0.94969 0.98508 0.91305 1.62385 1.05987 1.15976 1.41527 1.20268 0.88189 0.89481 1.00714 1.24454 1.08719 1.00442 0.96491 1.20372 1.01579 0.93331 1.00692 1.20394 1.02563 0.98319 0.95448 1.25951 1.08787 1.01310 0.97973 1.84374 1.65175 1.08008 1.09072 1.19044 0.91191 0.83279 0.94114 1.01764 1.21376 1.28584 0.96397 1.10132 0.91961 1.25730 0.95263 0.98239 0.99095 1.70023 1.35211 1.12501 1.37760 0.85508 0.78980 0.77501 0.79378 1.20079 1.20901 1.19168 1.22049 0.96589 0.97514 0.88109 0.96112 0.89545 0.92329 0.88630 0.95252 0.89407 0.96615 0.96508 0.89940 0.84191 0.81610 0.78989 0.92745 0.90289 0.98199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.10 9.60 127.69 1.23 2.32 16 2 N -0.57 -23.91 4.97 -921.92 -4.58 -28.49 16 3 C 0.06 2.31 5.62 86.31 0.49 2.80 16 4 C 0.06 2.26 4.77 86.31 0.41 2.67 16 5 N -0.53 -23.85 4.66 -879.41 -4.10 -27.95 16 6 C 0.14 5.85 5.20 85.56 0.45 6.30 16 7 C -0.18 -6.05 4.45 24.59 0.11 -5.94 16 8 C -0.13 -3.66 10.05 21.21 0.21 -3.45 16 9 C -0.14 -3.03 10.18 21.22 0.22 -2.81 16 10 C -0.20 -4.29 11.23 66.72 0.75 -3.54 16 11 S 0.07 1.94 21.78 -56.49 -1.23 0.71 16 12 C 0.23 12.18 1.90 44.17 0.08 12.26 16 13 H -0.04 -2.13 8.14 -2.38 -0.02 -2.14 16 14 C -0.53 -29.12 8.02 25.60 0.21 -28.91 16 15 H 0.06 3.40 6.50 -2.91 -0.02 3.38 16 16 C 0.02 0.90 5.30 84.65 0.45 1.35 16 17 N -0.92 -52.83 11.35 21.45 0.24 -52.59 16 18 Si 0.96 43.50 29.54 68.60 2.03 45.52 16 19 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 20 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 21 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 22 C 0.09 4.33 4.66 86.31 0.40 4.73 16 23 H 0.02 0.68 8.14 -2.38 -0.02 0.66 16 24 H 0.09 2.39 8.13 -2.39 -0.02 2.37 16 25 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 26 H 0.10 2.87 8.13 -2.38 -0.02 2.85 16 27 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 28 H 0.09 3.04 5.75 -2.39 -0.01 3.03 16 29 H 0.02 0.65 8.14 -2.38 -0.02 0.63 16 30 H 0.02 0.74 8.08 -2.39 -0.02 0.72 16 31 H 0.08 3.55 6.68 -2.39 -0.02 3.53 16 32 H 0.14 3.91 8.06 -2.91 -0.02 3.89 16 33 H 0.17 2.62 8.06 -2.91 -0.02 2.60 16 34 H 0.19 2.67 8.06 -2.91 -0.02 2.65 16 35 H 0.26 14.41 8.31 -92.71 -0.77 13.64 16 36 H 0.08 4.44 6.13 -2.39 -0.01 4.43 16 37 H 0.00 -0.01 8.14 -2.39 -0.02 -0.03 16 Total: -1.00 -62.49 305.34 -1.60 -64.09 By element: Atomic # 1 Polarization: 9.87 SS G_CDS: 1.04 Total: 10.92 kcal Atomic # 6 Polarization: -17.22 SS G_CDS: 5.00 Total: -12.23 kcal Atomic # 7 Polarization: -100.59 SS G_CDS: -8.44 Total: -109.02 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.52 kcal Atomic # 16 Polarization: 1.94 SS G_CDS: -1.23 Total: 0.71 kcal Total: -62.49 -1.60 -64.09 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259921287.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.040 kcal (2) G-P(sol) polarization free energy of solvation -62.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.094 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.88 seconds