Wall clock time and date at job start Mon Mar 30 2020 05:41:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36349 * 125.63122 * 2 1 4 4 C 1.34851 * 108.21428 * 179.69154 * 3 2 1 5 5 C 1.40891 * 107.41717 * 0.42590 * 4 3 2 6 6 C 1.50705 * 126.29111 * 179.83322 * 5 4 3 7 7 N 1.46902 * 109.47009 * 269.68981 * 6 5 4 8 8 C 1.46864 * 110.91715 * 316.07070 * 7 6 5 9 9 C 1.53249 * 109.64534 * 162.34468 * 8 7 6 10 10 S 1.81897 * 108.66568 * 61.88673 * 9 8 7 11 11 C 1.81893 * 101.91561 * 308.59595 * 10 9 8 12 12 C 1.46471 * 110.99844 * 189.99739 * 7 6 5 13 13 H 1.08999 * 109.39980 * 77.65021 * 12 7 6 14 14 C 1.50699 * 109.34288 * 317.84637 * 12 7 6 15 15 H 1.07997 * 119.99934 * 359.64755 * 14 12 7 16 16 C 1.37880 * 119.99866 * 179.63894 * 14 12 7 17 17 N 1.31515 * 120.00009 * 0.02562 * 16 14 12 18 18 Si 1.86797 * 119.99706 * 180.02562 * 16 14 12 19 19 H 1.48500 * 109.46876 * 90.00646 * 18 16 14 20 20 H 1.48503 * 109.47155 * 209.99839 * 18 16 14 21 21 H 1.48492 * 109.47723 * 330.00213 * 18 16 14 22 22 C 1.34850 * 107.41934 * 359.57384 * 5 4 3 23 23 H 1.08997 * 109.47575 * 270.04468 * 1 2 3 24 24 H 1.09006 * 109.47264 * 30.04593 * 1 2 3 25 25 H 1.09005 * 109.47478 * 150.04264 * 1 2 3 26 26 H 1.07995 * 125.89191 * 359.95751 * 3 2 1 27 27 H 1.07999 * 126.28995 * 180.30184 * 4 3 2 28 28 H 1.08998 * 109.47009 * 149.69505 * 6 5 4 29 29 H 1.08998 * 109.47063 * 29.69058 * 6 5 4 30 30 H 1.09000 * 109.69043 * 42.18511 * 8 7 6 31 31 H 1.09003 * 109.34221 * 282.29473 * 8 7 6 32 32 H 1.09002 * 109.63269 * 302.08308 * 9 8 7 33 33 H 1.08995 * 109.63165 * 181.69050 * 9 8 7 34 34 H 1.09008 * 109.63104 * 171.01209 * 11 10 9 35 35 H 1.09000 * 109.63107 * 291.40264 * 11 10 9 36 36 H 0.97000 * 119.99776 * 179.97438 * 17 16 14 37 37 H 1.07994 * 125.89270 * 180.28208 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2593 1.1082 0.0000 4 6 3.5460 0.7046 0.0069 5 6 3.5460 -0.7043 0.0013 6 6 4.7608 -1.5963 0.0023 7 7 5.1561 -1.8866 -1.3824 8 6 3.9832 -2.2062 -2.2065 9 6 4.3437 -2.0715 -3.6899 10 16 5.6569 -3.2677 -4.0810 11 6 6.8857 -2.9126 -2.7877 12 6 6.1800 -2.9330 -1.4275 13 1 5.7109 -3.9054 -1.2774 14 6 7.1900 -2.6904 -0.3357 15 1 7.0822 -1.8393 0.3203 16 6 8.2517 -3.5552 -0.1742 17 7 8.3832 -4.5914 -0.9732 18 14 9.5033 -3.2548 1.1796 19 1 9.0696 -3.9506 2.4178 20 1 10.8266 -3.7782 0.7554 21 1 9.6085 -1.7970 1.4420 22 6 2.2594 -1.1080 0.0008 23 1 -0.3634 0.0008 1.0276 24 1 -0.3634 0.8896 -0.5146 25 1 -0.3634 -0.8904 -0.5132 26 1 1.9170 2.1325 -0.0006 27 1 4.4164 1.3439 0.0133 28 1 4.5266 -2.5285 0.5163 29 1 5.5801 -1.0938 0.5163 30 1 3.1692 -1.5217 -1.9680 31 1 3.6663 -3.2290 -2.0023 32 1 4.6978 -1.0603 -3.8904 33 1 3.4651 -2.2795 -4.3006 34 1 7.6670 -3.6725 -2.8063 35 1 7.3258 -1.9305 -2.9605 36 1 9.1303 -5.1996 -0.8597 37 1 1.9172 -2.1323 0.0013 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260134040.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:41:42 Heat of formation + Delta-G solvation = 67.574971 kcal Electronic energy + Delta-G solvation = -18512.555491 eV Core-core repulsion = 15803.420520 eV Total energy + Delta-G solvation = -2709.134970 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.98698 -37.31898 -33.41445 -32.63440 -30.40479 -29.83828 -28.07932 -26.39470 -25.33038 -23.64525 -22.02374 -20.11788 -19.54233 -19.01047 -16.86811 -16.38608 -15.58548 -15.15768 -14.81852 -14.36931 -13.95998 -13.76563 -13.45617 -13.04434 -12.76565 -12.64569 -12.47106 -12.31835 -11.95408 -11.91559 -11.34865 -11.08796 -10.92315 -10.86440 -10.74456 -10.34649 -10.22257 -10.00254 -9.31897 -8.59649 -8.44424 -8.18239 -7.76875 -7.12924 -6.75277 -6.09387 -4.16653 2.46831 2.82867 3.11803 3.27625 3.31655 3.35331 3.38946 3.67649 4.36592 4.70290 5.02219 5.05738 5.16313 5.23841 5.26189 5.40573 5.70108 5.77182 5.84444 5.91500 6.02284 6.29262 6.34375 6.49852 6.54105 6.67536 6.70656 6.82052 6.94304 7.27771 7.32660 7.49517 7.58071 7.62681 7.73356 7.97411 8.25154 8.53666 8.91720 9.49838 10.96206 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.018402 B = 0.006742 C = 0.005239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1521.232442 B = 4152.105702 C = 5342.843364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.458 5.458 3 C -0.030 4.030 4 C -0.177 4.177 5 C -0.146 4.146 6 C 0.143 3.857 7 N -0.542 5.542 8 C 0.051 3.949 9 C -0.062 4.062 10 S -0.348 6.348 11 C -0.033 4.033 12 C 0.222 3.778 13 H 0.013 0.987 14 C -0.512 4.512 15 H 0.072 0.928 16 C 0.062 3.938 17 N -0.889 5.889 18 Si 0.899 3.101 19 H -0.280 1.280 20 H -0.286 1.286 21 H -0.272 1.272 22 C -0.022 4.022 23 H 0.067 0.933 24 H 0.078 0.922 25 H 0.079 0.921 26 H 0.155 0.845 27 H 0.134 0.866 28 H 0.032 0.968 29 H 0.086 0.914 30 H 0.082 0.918 31 H 0.028 0.972 32 H 0.078 0.922 33 H 0.084 0.916 34 H 0.131 0.869 35 H 0.063 0.937 36 H 0.264 0.736 37 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.493 8.063 1.098 15.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.135 5.135 3 C -0.158 4.158 4 C -0.203 4.203 5 C -0.153 4.153 6 C 0.016 3.984 7 N -0.267 5.267 8 C -0.078 4.078 9 C -0.210 4.210 10 S -0.121 6.121 11 C -0.181 4.181 12 C 0.114 3.886 13 H 0.031 0.969 14 C -0.552 4.552 15 H 0.090 0.910 16 C -0.140 4.140 17 N -0.527 5.527 18 Si 0.727 3.273 19 H -0.206 1.206 20 H -0.212 1.212 21 H -0.197 1.197 22 C -0.152 4.152 23 H 0.085 0.915 24 H 0.097 0.903 25 H 0.098 0.902 26 H 0.173 0.827 27 H 0.152 0.848 28 H 0.050 0.950 29 H 0.104 0.896 30 H 0.100 0.900 31 H 0.047 0.953 32 H 0.096 0.904 33 H 0.103 0.897 34 H 0.149 0.851 35 H 0.081 0.919 36 H 0.074 0.926 37 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -13.503 7.541 -0.005 15.466 hybrid contribution 0.272 0.224 1.803 1.837 sum -13.231 7.766 1.798 15.447 Atomic orbital electron populations 1.21915 0.78040 1.03859 1.02660 1.43862 1.05632 1.06243 1.57738 1.21705 0.90614 0.91051 1.12476 1.20835 0.95597 0.94804 1.09013 1.19784 0.93669 0.94507 1.07355 1.20271 0.92595 0.95439 0.90089 1.61392 1.10041 1.45924 1.09370 1.22335 0.94545 0.99165 0.91782 1.23279 0.98348 1.00352 0.99058 1.86488 1.23967 1.53081 1.48611 1.23953 0.97332 1.04606 0.92196 1.19339 0.88809 0.88263 0.92232 0.96893 1.21301 1.08759 1.10998 1.14100 0.91039 1.24993 0.97867 0.94822 0.96363 1.69840 1.31083 1.14177 1.37622 0.86468 0.80482 0.78617 0.81757 1.20649 1.21175 1.19683 1.21648 0.90324 0.91049 1.12147 0.91478 0.90311 0.90231 0.82736 0.84812 0.95023 0.89558 0.89992 0.95333 0.90356 0.89726 0.85132 0.91870 0.92598 0.82763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.60 11.12 59.85 0.67 1.26 16 2 N -0.46 -5.65 3.15 -124.53 -0.39 -6.04 16 3 C -0.03 -0.39 11.43 -16.74 -0.19 -0.58 16 4 C -0.18 -2.77 10.81 -39.78 -0.43 -3.20 16 5 C -0.15 -2.49 4.28 -104.82 -0.45 -2.93 16 6 C 0.14 2.88 4.89 -4.97 -0.02 2.86 16 7 N -0.54 -11.73 4.46 -229.53 -1.02 -12.76 16 8 C 0.05 0.99 5.01 -3.71 -0.02 0.97 16 9 C -0.06 -1.15 6.67 37.29 0.25 -0.91 16 10 S -0.35 -7.66 22.40 -107.50 -2.41 -10.06 16 11 C -0.03 -0.81 5.76 37.28 0.21 -0.60 16 12 C 0.22 5.54 1.84 -68.97 -0.13 5.42 16 13 H 0.01 0.38 7.92 -51.93 -0.41 -0.03 16 14 C -0.51 -13.49 7.92 -34.44 -0.27 -13.77 16 15 H 0.07 1.86 5.64 -52.49 -0.30 1.56 16 16 C 0.06 1.66 5.30 -17.82 -0.09 1.57 16 17 N -0.89 -24.74 11.31 55.43 0.63 -24.11 16 18 Si 0.90 20.76 29.54 -169.99 -5.02 15.74 16 19 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 20 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 21 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 22 C -0.02 -0.32 9.48 -16.75 -0.16 -0.48 16 23 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 24 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.16 1.52 8.06 -52.49 -0.42 1.10 16 27 H 0.13 2.04 8.06 -52.49 -0.42 1.61 16 28 H 0.03 0.67 8.08 -51.93 -0.42 0.25 16 29 H 0.09 1.84 6.17 -51.93 -0.32 1.52 16 30 H 0.08 1.45 4.83 -51.93 -0.25 1.20 16 31 H 0.03 0.58 7.92 -51.93 -0.41 0.17 16 32 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 33 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 34 H 0.13 3.55 6.04 -51.92 -0.31 3.24 16 35 H 0.06 1.57 8.14 -51.93 -0.42 1.15 16 36 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 37 H 0.15 2.07 8.06 -52.49 -0.42 1.64 16 LS Contribution 304.64 15.07 4.59 4.59 Total: -1.00 -29.20 304.64 -9.63 -38.83 By element: Atomic # 1 Polarization: 9.56 SS G_CDS: -5.36 Total: 4.20 kcal Atomic # 6 Polarization: -9.75 SS G_CDS: -0.64 Total: -10.39 kcal Atomic # 7 Polarization: -42.12 SS G_CDS: -0.79 Total: -42.91 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Atomic # 16 Polarization: -7.66 SS G_CDS: -2.41 Total: -10.06 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -29.20 -9.63 -38.83 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260134040.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.408 kcal (2) G-P(sol) polarization free energy of solvation -29.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.833 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds