Wall clock time and date at job start Mon Mar 30 2020 05:41:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36349 * 125.63122 * 2 1 4 4 C 1.34851 * 108.21428 * 179.69154 * 3 2 1 5 5 C 1.40891 * 107.41717 * 0.42590 * 4 3 2 6 6 C 1.50705 * 126.29111 * 179.83322 * 5 4 3 7 7 N 1.46902 * 109.47009 * 269.68981 * 6 5 4 8 8 C 1.46864 * 110.91715 * 316.07070 * 7 6 5 9 9 C 1.53249 * 109.64534 * 162.34468 * 8 7 6 10 10 S 1.81897 * 108.66568 * 61.88673 * 9 8 7 11 11 C 1.81893 * 101.91561 * 308.59595 * 10 9 8 12 12 C 1.46471 * 110.99844 * 189.99739 * 7 6 5 13 13 H 1.08999 * 109.39980 * 77.65021 * 12 7 6 14 14 C 1.50699 * 109.34288 * 317.84637 * 12 7 6 15 15 H 1.07997 * 119.99934 * 359.64755 * 14 12 7 16 16 C 1.37880 * 119.99866 * 179.63894 * 14 12 7 17 17 N 1.31515 * 120.00009 * 0.02562 * 16 14 12 18 18 Si 1.86797 * 119.99706 * 180.02562 * 16 14 12 19 19 H 1.48500 * 109.46876 * 90.00646 * 18 16 14 20 20 H 1.48503 * 109.47155 * 209.99839 * 18 16 14 21 21 H 1.48492 * 109.47723 * 330.00213 * 18 16 14 22 22 C 1.34850 * 107.41934 * 359.57384 * 5 4 3 23 23 H 1.08997 * 109.47575 * 270.04468 * 1 2 3 24 24 H 1.09006 * 109.47264 * 30.04593 * 1 2 3 25 25 H 1.09005 * 109.47478 * 150.04264 * 1 2 3 26 26 H 1.07995 * 125.89191 * 359.95751 * 3 2 1 27 27 H 1.07999 * 126.28995 * 180.30184 * 4 3 2 28 28 H 1.08998 * 109.47009 * 149.69505 * 6 5 4 29 29 H 1.08998 * 109.47063 * 29.69058 * 6 5 4 30 30 H 1.09000 * 109.69043 * 42.18511 * 8 7 6 31 31 H 1.09003 * 109.34221 * 282.29473 * 8 7 6 32 32 H 1.09002 * 109.63269 * 302.08308 * 9 8 7 33 33 H 1.08995 * 109.63165 * 181.69050 * 9 8 7 34 34 H 1.09008 * 109.63104 * 171.01209 * 11 10 9 35 35 H 1.09000 * 109.63107 * 291.40264 * 11 10 9 36 36 H 0.97000 * 119.99776 * 179.97438 * 17 16 14 37 37 H 1.07994 * 125.89270 * 180.28208 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2593 1.1082 0.0000 4 6 3.5460 0.7046 0.0069 5 6 3.5460 -0.7043 0.0013 6 6 4.7608 -1.5963 0.0023 7 7 5.1561 -1.8866 -1.3824 8 6 3.9832 -2.2062 -2.2065 9 6 4.3437 -2.0715 -3.6899 10 16 5.6569 -3.2677 -4.0810 11 6 6.8857 -2.9126 -2.7877 12 6 6.1800 -2.9330 -1.4275 13 1 5.7109 -3.9054 -1.2774 14 6 7.1900 -2.6904 -0.3357 15 1 7.0822 -1.8393 0.3203 16 6 8.2517 -3.5552 -0.1742 17 7 8.3832 -4.5914 -0.9732 18 14 9.5033 -3.2548 1.1796 19 1 9.0696 -3.9506 2.4178 20 1 10.8266 -3.7782 0.7554 21 1 9.6085 -1.7970 1.4420 22 6 2.2594 -1.1080 0.0008 23 1 -0.3634 0.0008 1.0276 24 1 -0.3634 0.8896 -0.5146 25 1 -0.3634 -0.8904 -0.5132 26 1 1.9170 2.1325 -0.0006 27 1 4.4164 1.3439 0.0133 28 1 4.5266 -2.5285 0.5163 29 1 5.5801 -1.0938 0.5163 30 1 3.1692 -1.5217 -1.9680 31 1 3.6663 -3.2290 -2.0023 32 1 4.6978 -1.0603 -3.8904 33 1 3.4651 -2.2795 -4.3006 34 1 7.6670 -3.6725 -2.8063 35 1 7.3258 -1.9305 -2.9605 36 1 9.1303 -5.1996 -0.8597 37 1 1.9172 -2.1323 0.0013 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260134040.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:41:41 Heat of formation + Delta-G solvation = 50.568510 kcal Electronic energy + Delta-G solvation = -18513.292946 eV Core-core repulsion = 15803.420520 eV Total energy + Delta-G solvation = -2709.872426 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.08021 -39.03302 -35.19623 -33.90958 -32.07391 -31.41142 -29.36773 -27.50451 -27.33586 -25.05162 -23.73180 -21.57647 -20.90572 -20.28515 -18.59084 -17.69399 -17.38440 -16.71778 -16.22641 -15.76961 -15.71341 -15.06025 -14.82781 -14.53946 -14.51690 -14.12593 -13.73408 -13.48551 -13.20928 -13.04047 -12.91925 -12.86668 -12.68979 -12.52199 -12.31558 -12.19904 -12.05802 -11.91713 -11.09432 -10.62598 -10.33369 -9.30085 -9.04080 -8.79027 -8.55720 -8.15134 -6.30046 1.10525 1.40004 1.42576 1.44042 1.54785 1.83296 2.08760 2.22828 2.41431 3.13084 3.41032 4.07753 4.12332 4.24383 4.27969 4.32056 4.42688 4.53060 4.57461 4.59237 4.68509 4.72903 4.77705 4.86433 4.93824 4.97496 5.10886 5.26798 5.37953 5.54738 5.66785 5.71220 6.01677 6.11440 6.35031 6.37372 6.62845 6.72122 6.85905 7.40576 8.89521 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.018402 B = 0.006742 C = 0.005239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1521.232442 B = 4152.105702 C = 5342.843364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.450 5.450 3 C -0.009 4.009 4 C -0.210 4.210 5 C -0.177 4.177 6 C 0.153 3.847 7 N -0.546 5.546 8 C 0.057 3.943 9 C -0.051 4.051 10 S -0.355 6.355 11 C -0.028 4.028 12 C 0.232 3.768 13 H -0.029 1.029 14 C -0.526 4.526 15 H 0.070 0.930 16 C 0.017 3.983 17 N -0.917 5.917 18 Si 0.963 3.037 19 H -0.276 1.276 20 H -0.283 1.283 21 H -0.266 1.266 22 C -0.019 4.019 23 H 0.082 0.918 24 H 0.103 0.897 25 H 0.091 0.909 26 H 0.192 0.808 27 H 0.127 0.873 28 H 0.011 0.989 29 H 0.064 0.936 30 H 0.106 0.894 31 H 0.017 0.983 32 H 0.083 0.917 33 H 0.121 0.879 34 H 0.102 0.898 35 H 0.054 0.946 36 H 0.265 0.735 37 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.964 9.850 1.188 18.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.126 5.126 3 C -0.139 4.139 4 C -0.235 4.235 5 C -0.184 4.184 6 C 0.026 3.974 7 N -0.271 5.271 8 C -0.072 4.072 9 C -0.199 4.199 10 S -0.128 6.128 11 C -0.177 4.177 12 C 0.123 3.877 13 H -0.011 1.011 14 C -0.565 4.565 15 H 0.088 0.912 16 C -0.183 4.183 17 N -0.556 5.556 18 Si 0.788 3.212 19 H -0.202 1.202 20 H -0.208 1.208 21 H -0.191 1.191 22 C -0.151 4.151 23 H 0.100 0.900 24 H 0.121 0.879 25 H 0.110 0.890 26 H 0.209 0.791 27 H 0.145 0.855 28 H 0.029 0.971 29 H 0.082 0.918 30 H 0.124 0.876 31 H 0.035 0.965 32 H 0.102 0.898 33 H 0.139 0.861 34 H 0.120 0.880 35 H 0.073 0.927 36 H 0.074 0.926 37 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -16.013 9.342 0.086 18.539 hybrid contribution 0.896 -0.293 1.766 2.002 sum -15.117 9.050 1.852 17.715 Atomic orbital electron populations 1.22284 0.74816 1.05757 1.04269 1.44167 1.07503 1.05198 1.55708 1.22155 0.89576 0.92623 1.09524 1.20909 0.97066 0.94124 1.11410 1.19518 0.93313 0.94882 1.10705 1.20029 0.93656 0.94979 0.88769 1.61377 1.10773 1.44164 1.10752 1.22354 0.94159 0.99033 0.91666 1.23425 0.98047 0.99361 0.99115 1.86404 1.24562 1.54798 1.47031 1.23582 0.97685 1.03005 0.93418 1.19044 0.89309 0.87186 0.92186 1.01115 1.21565 1.09300 1.11010 1.14672 0.91206 1.25760 0.99609 0.94529 0.98423 1.69978 1.31672 1.14948 1.39033 0.85477 0.78046 0.78663 0.79034 1.20152 1.20826 1.19087 1.21679 0.89869 0.92213 1.11315 0.89987 0.87882 0.89013 0.79076 0.85533 0.97075 0.91776 0.87589 0.96492 0.89800 0.86079 0.87970 0.92727 0.92616 0.81831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.74 11.12 127.77 1.42 2.16 16 2 N -0.45 -9.48 3.15 -547.90 -1.72 -11.20 16 3 C -0.01 -0.19 11.43 83.21 0.95 0.76 16 4 C -0.21 -6.32 10.81 22.14 0.24 -6.08 16 5 C -0.18 -5.94 4.28 -19.99 -0.09 -6.03 16 6 C 0.15 6.38 4.89 85.56 0.42 6.80 16 7 N -0.55 -24.20 4.46 -880.10 -3.93 -28.13 16 8 C 0.06 2.15 5.01 86.39 0.43 2.58 16 9 C -0.05 -1.82 6.67 72.07 0.48 -1.34 16 10 S -0.35 -15.61 22.40 -56.49 -1.27 -16.88 16 11 C -0.03 -1.45 5.76 72.06 0.41 -1.04 16 12 C 0.23 12.12 1.84 44.33 0.08 12.20 16 13 H -0.03 -1.70 7.92 -2.39 -0.02 -1.72 16 14 C -0.53 -28.91 7.92 25.60 0.20 -28.70 16 15 H 0.07 3.79 5.64 -2.91 -0.02 3.77 16 16 C 0.02 0.91 5.30 84.66 0.45 1.36 16 17 N -0.92 -52.99 11.31 21.45 0.24 -52.74 16 18 Si 0.96 43.58 29.54 68.60 2.03 45.60 16 19 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 20 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 21 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 22 C -0.02 -0.53 9.48 83.21 0.79 0.26 16 23 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 24 H 0.10 0.68 8.14 -2.38 -0.02 0.66 16 25 H 0.09 0.82 8.14 -2.38 -0.02 0.80 16 26 H 0.19 2.81 8.06 -2.91 -0.02 2.78 16 27 H 0.13 3.85 8.06 -2.91 -0.02 3.83 16 28 H 0.01 0.49 8.08 -2.39 -0.02 0.47 16 29 H 0.06 2.89 6.17 -2.39 -0.01 2.87 16 30 H 0.11 3.54 4.83 -2.39 -0.01 3.52 16 31 H 0.02 0.68 7.92 -2.39 -0.02 0.66 16 32 H 0.08 2.95 8.14 -2.39 -0.02 2.94 16 33 H 0.12 3.49 8.14 -2.39 -0.02 3.47 16 34 H 0.10 5.84 6.04 -2.38 -0.01 5.83 16 35 H 0.05 2.81 8.14 -2.39 -0.02 2.80 16 36 H 0.26 14.53 8.31 -92.71 -0.77 13.76 16 37 H 0.16 4.08 8.06 -2.91 -0.02 4.06 16 Total: -1.00 -65.82 304.64 2.19 -63.63 By element: Atomic # 1 Polarization: 15.73 SS G_CDS: 1.05 Total: 16.78 kcal Atomic # 6 Polarization: -22.86 SS G_CDS: 5.80 Total: -17.06 kcal Atomic # 7 Polarization: -86.66 SS G_CDS: -5.41 Total: -92.07 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.60 kcal Atomic # 16 Polarization: -15.61 SS G_CDS: -1.27 Total: -16.88 kcal Total: -65.82 2.19 -63.63 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260134040.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.196 kcal (2) G-P(sol) polarization free energy of solvation -65.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.628 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds