Wall clock time and date at job start Mon Mar 30 2020 05:41:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36347 * 125.63726 * 2 1 4 4 C 1.34845 * 108.21989 * 179.76305 * 3 2 1 5 5 C 1.40891 * 107.41592 * 0.43603 * 4 3 2 6 6 C 1.50706 * 126.29352 * 179.82886 * 5 4 3 7 7 N 1.46897 * 109.46900 * 269.69309 * 6 5 4 8 8 C 1.46472 * 111.00462 * 44.01361 * 7 6 5 9 9 C 1.53244 * 109.85895 * 197.76699 * 8 7 6 10 10 S 1.81901 * 108.50781 * 297.99441 * 9 8 7 11 11 C 1.81908 * 101.91232 * 51.31054 * 10 9 8 12 12 C 1.46467 * 110.99877 * 170.00115 * 7 6 5 13 13 H 1.09009 * 109.40524 * 282.34927 * 12 7 6 14 14 C 1.50692 * 109.40969 * 42.18876 * 12 7 6 15 15 H 1.08000 * 120.00080 * 0.02562 * 14 12 7 16 16 C 1.37880 * 120.00264 * 180.02562 * 14 12 7 17 17 N 1.31511 * 119.99716 * 0.02562 * 16 14 12 18 18 Si 1.86800 * 120.00217 * 180.02562 * 16 14 12 19 19 H 1.48494 * 109.47068 * 59.99889 * 18 16 14 20 20 H 1.48503 * 109.47280 * 180.02562 * 18 16 14 21 21 H 1.48506 * 109.47080 * 300.00147 * 18 16 14 22 22 C 1.34850 * 107.42102 * 359.56678 * 5 4 3 23 23 H 1.09005 * 109.46684 * 269.95409 * 1 2 3 24 24 H 1.08994 * 109.47322 * 29.95012 * 1 2 3 25 25 H 1.08993 * 109.47107 * 149.95593 * 1 2 3 26 26 H 1.08000 * 125.88497 * 0.04898 * 3 2 1 27 27 H 1.08002 * 126.29561 * 180.30438 * 4 3 2 28 28 H 1.09000 * 109.46646 * 29.68417 * 6 5 4 29 29 H 1.09000 * 109.47248 * 149.69134 * 6 5 4 30 30 H 1.08997 * 109.40478 * 317.88949 * 8 7 6 31 31 H 1.08997 * 109.39858 * 77.64755 * 8 7 6 32 32 H 1.09005 * 109.63006 * 178.29467 * 9 8 7 33 33 H 1.08997 * 109.79988 * 57.79800 * 9 8 7 34 34 H 1.08992 * 109.63018 * 188.99017 * 11 10 9 35 35 H 1.08994 * 109.63012 * 68.39245 * 11 10 9 36 36 H 0.97005 * 120.00107 * 179.97438 * 17 16 14 37 37 H 1.07996 * 125.89625 * 180.28447 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2594 1.1081 0.0000 4 6 3.5460 0.7045 0.0053 5 6 3.5461 -0.7044 -0.0015 6 6 4.7607 -1.5965 -0.0026 7 7 5.1546 -1.8855 -1.3880 8 6 5.1103 -0.6741 -2.2101 9 6 5.0853 -1.0530 -3.6947 10 16 6.6195 -1.9476 -4.0883 11 6 6.6499 -3.2275 -2.7960 12 6 6.4595 -2.5492 -1.4350 13 1 7.2471 -1.8106 -1.2851 14 6 6.5328 -3.5875 -0.3453 15 1 5.6915 -3.7375 0.3151 16 6 7.6739 -4.3459 -0.1913 17 7 8.6985 -4.1629 -0.9952 18 14 7.7645 -5.6335 1.1590 19 1 6.6902 -6.6386 0.9575 20 1 9.0875 -6.3064 1.1134 21 1 7.5880 -4.9785 2.4801 22 6 2.2594 -1.1081 -0.0010 23 1 -0.3633 -0.0008 1.0277 24 1 -0.3634 0.8904 -0.5130 25 1 -0.3633 -0.8895 -0.5145 26 1 1.9171 2.1324 0.0007 27 1 4.4166 1.3437 0.0113 28 1 5.5806 -1.0943 0.5109 29 1 4.5271 -2.5291 0.5108 30 1 4.2139 -0.1038 -1.9666 31 1 5.9916 -0.0659 -2.0063 32 1 5.0218 -0.1501 -4.3021 33 1 4.2262 -1.6923 -3.8981 34 1 7.6086 -3.7455 -2.8161 35 1 5.8422 -3.9393 -2.9665 36 1 9.5015 -4.6962 -0.8867 37 1 1.9172 -2.1324 -0.0010 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260134047.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:41:47 Heat of formation + Delta-G solvation = 66.784170 kcal Electronic energy + Delta-G solvation = -18499.769612 eV Core-core repulsion = 15790.600350 eV Total energy + Delta-G solvation = -2709.169262 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 3.97 seconds Orbital eigenvalues (eV) -40.96978 -37.33594 -33.44576 -32.56803 -30.49483 -29.71330 -28.11171 -26.36270 -25.33313 -23.64854 -21.99216 -20.08618 -19.62778 -18.92819 -16.83930 -16.40343 -15.58614 -15.13595 -14.81714 -14.31233 -14.00272 -13.74332 -13.35290 -12.96463 -12.87355 -12.65078 -12.49380 -12.31535 -11.96332 -11.88833 -11.32309 -11.05860 -10.93338 -10.83589 -10.79991 -10.33858 -10.21530 -9.99359 -9.30662 -8.58884 -8.42549 -8.14857 -7.79630 -7.13029 -6.73680 -6.08927 -4.16503 2.49772 2.84966 3.13376 3.28227 3.29176 3.34257 3.36135 3.69187 4.36160 4.72219 5.04293 5.07179 5.17713 5.24335 5.27972 5.46889 5.73807 5.77014 5.85598 5.92125 6.06436 6.26960 6.41691 6.48666 6.58988 6.68934 6.71179 6.79348 6.95917 7.29379 7.31811 7.50445 7.60294 7.63869 7.73337 7.98174 8.26005 8.55078 8.91243 9.49775 10.96478 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.017620 B = 0.006821 C = 0.005264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1588.718050 B = 4103.853508 C = 5317.878921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.460 5.460 3 C -0.027 4.027 4 C -0.193 4.193 5 C -0.151 4.151 6 C 0.144 3.856 7 N -0.543 5.543 8 C 0.053 3.947 9 C -0.061 4.061 10 S -0.349 6.349 11 C -0.033 4.033 12 C 0.221 3.779 13 H 0.014 0.986 14 C -0.512 4.512 15 H 0.070 0.930 16 C 0.063 3.937 17 N -0.888 5.888 18 Si 0.899 3.101 19 H -0.276 1.276 20 H -0.287 1.287 21 H -0.276 1.276 22 C -0.004 4.004 23 H 0.066 0.934 24 H 0.077 0.923 25 H 0.080 0.920 26 H 0.155 0.845 27 H 0.130 0.870 28 H 0.035 0.965 29 H 0.083 0.917 30 H 0.085 0.915 31 H 0.030 0.970 32 H 0.085 0.915 33 H 0.076 0.924 34 H 0.132 0.868 35 H 0.062 0.938 36 H 0.265 0.735 37 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.669 7.871 1.120 15.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.137 5.137 3 C -0.156 4.156 4 C -0.218 4.218 5 C -0.158 4.158 6 C 0.017 3.983 7 N -0.269 5.269 8 C -0.077 4.077 9 C -0.210 4.210 10 S -0.122 6.122 11 C -0.181 4.181 12 C 0.113 3.887 13 H 0.031 0.969 14 C -0.552 4.552 15 H 0.088 0.912 16 C -0.140 4.140 17 N -0.527 5.527 18 Si 0.727 3.273 19 H -0.201 1.201 20 H -0.212 1.212 21 H -0.202 1.202 22 C -0.133 4.133 23 H 0.085 0.915 24 H 0.096 0.904 25 H 0.098 0.902 26 H 0.172 0.828 27 H 0.148 0.852 28 H 0.053 0.947 29 H 0.101 0.899 30 H 0.103 0.897 31 H 0.048 0.952 32 H 0.104 0.896 33 H 0.095 0.905 34 H 0.149 0.851 35 H 0.080 0.920 36 H 0.075 0.925 37 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -13.440 7.670 0.019 15.475 hybrid contribution -0.163 -0.363 1.807 1.850 sum -13.603 7.308 1.825 15.549 Atomic orbital electron populations 1.21908 0.78015 1.03866 1.02633 1.43898 1.05682 1.06303 1.57814 1.21658 0.90551 0.91117 1.12245 1.20868 0.95687 0.94961 1.10315 1.19759 0.94306 0.93792 1.07921 1.20246 0.91341 0.96674 0.90080 1.61317 1.32723 1.23480 1.09346 1.22242 1.01132 0.92792 0.91504 1.23294 0.97371 1.01130 0.99224 1.86496 1.33747 1.43429 1.48573 1.23959 1.06651 0.95222 0.92246 1.19338 0.83994 0.93205 0.92189 0.96859 1.21251 1.00560 1.19286 1.14134 0.91183 1.24988 0.95454 0.97243 0.96332 1.69823 1.04766 1.40555 1.37523 0.86534 0.77232 0.81470 0.82086 1.20137 1.21248 1.20169 1.21645 0.90065 0.91067 1.10526 0.91498 0.90390 0.90153 0.82788 0.85181 0.94700 0.89931 0.89706 0.95200 0.89650 0.90527 0.85072 0.91969 0.92528 0.82326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.61 11.12 59.85 0.67 1.27 16 2 N -0.46 -5.70 3.15 -124.53 -0.39 -6.09 16 3 C -0.03 -0.35 11.43 -16.75 -0.19 -0.54 16 4 C -0.19 -2.94 9.05 -39.78 -0.36 -3.30 16 5 C -0.15 -2.56 4.19 -104.82 -0.44 -3.00 16 6 C 0.14 2.89 4.89 -4.97 -0.02 2.87 16 7 N -0.54 -11.75 4.46 -229.87 -1.03 -12.78 16 8 C 0.05 1.04 5.02 -3.93 -0.02 1.02 16 9 C -0.06 -1.16 6.69 37.28 0.25 -0.91 16 10 S -0.35 -7.72 22.40 -107.50 -2.41 -10.12 16 11 C -0.03 -0.81 5.75 37.29 0.21 -0.60 16 12 C 0.22 5.54 1.85 -68.97 -0.13 5.41 16 13 H 0.01 0.39 7.92 -51.92 -0.41 -0.02 16 14 C -0.51 -13.49 7.93 -34.44 -0.27 -13.76 16 15 H 0.07 1.80 5.64 -52.49 -0.30 1.51 16 16 C 0.06 1.67 5.30 -17.82 -0.09 1.57 16 17 N -0.89 -24.75 11.28 55.43 0.63 -24.12 16 18 Si 0.90 20.71 29.54 -169.99 -5.02 15.69 16 19 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 20 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 21 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 22 C 0.00 -0.05 11.35 -16.75 -0.19 -0.24 16 23 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 24 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.15 1.49 8.06 -52.49 -0.42 1.07 16 27 H 0.13 1.92 8.06 -52.49 -0.42 1.50 16 28 H 0.03 0.75 8.08 -51.93 -0.42 0.33 16 29 H 0.08 1.72 6.18 -51.93 -0.32 1.40 16 30 H 0.08 1.54 4.82 -51.93 -0.25 1.29 16 31 H 0.03 0.62 7.91 -51.93 -0.41 0.21 16 32 H 0.09 1.41 8.14 -51.93 -0.42 0.98 16 33 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 34 H 0.13 3.57 6.01 -51.93 -0.31 3.26 16 35 H 0.06 1.54 8.14 -51.93 -0.42 1.12 16 36 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 37 H 0.16 2.16 8.06 -52.49 -0.42 1.74 16 LS Contribution 304.59 15.07 4.59 4.59 Total: -1.00 -29.14 304.59 -9.58 -38.72 By element: Atomic # 1 Polarization: 9.68 SS G_CDS: -5.36 Total: 4.32 kcal Atomic # 6 Polarization: -9.61 SS G_CDS: -0.59 Total: -10.20 kcal Atomic # 7 Polarization: -42.20 SS G_CDS: -0.79 Total: -42.99 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Atomic # 16 Polarization: -7.72 SS G_CDS: -2.41 Total: -10.12 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -29.14 -9.58 -38.72 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260134047.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.504 kcal (2) G-P(sol) polarization free energy of solvation -29.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.720 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.97 seconds