Wall clock time and date at job start Mon Mar 30 2020 05:41:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36347 * 125.63726 * 2 1 4 4 C 1.34845 * 108.21989 * 179.76305 * 3 2 1 5 5 C 1.40891 * 107.41592 * 0.43603 * 4 3 2 6 6 C 1.50706 * 126.29352 * 179.82886 * 5 4 3 7 7 N 1.46897 * 109.46900 * 269.69309 * 6 5 4 8 8 C 1.46472 * 111.00462 * 44.01361 * 7 6 5 9 9 C 1.53244 * 109.85895 * 197.76699 * 8 7 6 10 10 S 1.81901 * 108.50781 * 297.99441 * 9 8 7 11 11 C 1.81908 * 101.91232 * 51.31054 * 10 9 8 12 12 C 1.46467 * 110.99877 * 170.00115 * 7 6 5 13 13 H 1.09009 * 109.40524 * 282.34927 * 12 7 6 14 14 C 1.50692 * 109.40969 * 42.18876 * 12 7 6 15 15 H 1.08000 * 120.00080 * 0.02562 * 14 12 7 16 16 C 1.37880 * 120.00264 * 180.02562 * 14 12 7 17 17 N 1.31511 * 119.99716 * 0.02562 * 16 14 12 18 18 Si 1.86800 * 120.00217 * 180.02562 * 16 14 12 19 19 H 1.48494 * 109.47068 * 59.99889 * 18 16 14 20 20 H 1.48503 * 109.47280 * 180.02562 * 18 16 14 21 21 H 1.48506 * 109.47080 * 300.00147 * 18 16 14 22 22 C 1.34850 * 107.42102 * 359.56678 * 5 4 3 23 23 H 1.09005 * 109.46684 * 269.95409 * 1 2 3 24 24 H 1.08994 * 109.47322 * 29.95012 * 1 2 3 25 25 H 1.08993 * 109.47107 * 149.95593 * 1 2 3 26 26 H 1.08000 * 125.88497 * 0.04898 * 3 2 1 27 27 H 1.08002 * 126.29561 * 180.30438 * 4 3 2 28 28 H 1.09000 * 109.46646 * 29.68417 * 6 5 4 29 29 H 1.09000 * 109.47248 * 149.69134 * 6 5 4 30 30 H 1.08997 * 109.40478 * 317.88949 * 8 7 6 31 31 H 1.08997 * 109.39858 * 77.64755 * 8 7 6 32 32 H 1.09005 * 109.63006 * 178.29467 * 9 8 7 33 33 H 1.08997 * 109.79988 * 57.79800 * 9 8 7 34 34 H 1.08992 * 109.63018 * 188.99017 * 11 10 9 35 35 H 1.08994 * 109.63012 * 68.39245 * 11 10 9 36 36 H 0.97005 * 120.00107 * 179.97438 * 17 16 14 37 37 H 1.07996 * 125.89625 * 180.28447 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2594 1.1081 0.0000 4 6 3.5460 0.7045 0.0053 5 6 3.5461 -0.7044 -0.0015 6 6 4.7607 -1.5965 -0.0026 7 7 5.1546 -1.8855 -1.3880 8 6 5.1103 -0.6741 -2.2101 9 6 5.0853 -1.0530 -3.6947 10 16 6.6195 -1.9476 -4.0883 11 6 6.6499 -3.2275 -2.7960 12 6 6.4595 -2.5492 -1.4350 13 1 7.2471 -1.8106 -1.2851 14 6 6.5328 -3.5875 -0.3453 15 1 5.6915 -3.7375 0.3151 16 6 7.6739 -4.3459 -0.1913 17 7 8.6985 -4.1629 -0.9952 18 14 7.7645 -5.6335 1.1590 19 1 6.6902 -6.6386 0.9575 20 1 9.0875 -6.3064 1.1134 21 1 7.5880 -4.9785 2.4801 22 6 2.2594 -1.1081 -0.0010 23 1 -0.3633 -0.0008 1.0277 24 1 -0.3634 0.8904 -0.5130 25 1 -0.3633 -0.8895 -0.5145 26 1 1.9171 2.1324 0.0007 27 1 4.4166 1.3437 0.0113 28 1 5.5806 -1.0943 0.5109 29 1 4.5271 -2.5291 0.5108 30 1 4.2139 -0.1038 -1.9666 31 1 5.9916 -0.0659 -2.0063 32 1 5.0218 -0.1501 -4.3021 33 1 4.2262 -1.6923 -3.8981 34 1 7.6086 -3.7455 -2.8161 35 1 5.8422 -3.9393 -2.9665 36 1 9.5015 -4.6962 -0.8867 37 1 1.9172 -2.1324 -0.0010 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260134047.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:41:46 Heat of formation + Delta-G solvation = 49.906188 kcal Electronic energy + Delta-G solvation = -18500.501496 eV Core-core repulsion = 15790.600350 eV Total energy + Delta-G solvation = -2709.901146 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.05948 -39.05897 -35.21556 -33.86851 -32.12393 -31.35457 -29.37664 -27.44849 -27.35314 -25.08528 -23.70781 -21.52094 -21.00461 -20.21635 -18.57100 -17.70103 -17.39475 -16.71848 -16.19129 -15.78116 -15.69781 -14.98270 -14.82753 -14.58460 -14.47351 -14.17315 -13.73459 -13.46730 -13.20705 -13.03093 -12.91094 -12.85022 -12.70476 -12.47584 -12.39495 -12.19329 -12.07980 -11.88085 -11.07700 -10.61612 -10.32651 -9.28434 -9.00687 -8.85254 -8.55115 -8.14365 -6.29811 1.10658 1.43538 1.44548 1.45921 1.53023 1.84475 2.05077 2.24682 2.41565 3.13523 3.42008 4.08143 4.13314 4.27702 4.30458 4.39294 4.42036 4.54386 4.57379 4.59875 4.69222 4.75689 4.78939 4.85473 4.94838 5.02017 5.07903 5.26108 5.38204 5.54693 5.66734 5.69994 6.02242 6.11607 6.32473 6.40902 6.65032 6.71491 6.85677 7.40699 8.90052 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.017620 B = 0.006821 C = 0.005264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1588.718050 B = 4103.853508 C = 5317.878921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.453 5.453 3 C -0.006 4.006 4 C -0.222 4.222 5 C -0.182 4.182 6 C 0.153 3.847 7 N -0.543 5.543 8 C 0.059 3.941 9 C -0.050 4.050 10 S -0.358 6.358 11 C -0.027 4.027 12 C 0.230 3.770 13 H -0.033 1.033 14 C -0.526 4.526 15 H 0.072 0.928 16 C 0.016 3.984 17 N -0.918 5.918 18 Si 0.964 3.036 19 H -0.268 1.268 20 H -0.285 1.285 21 H -0.271 1.271 22 C -0.003 4.003 23 H 0.082 0.918 24 H 0.102 0.898 25 H 0.090 0.910 26 H 0.192 0.808 27 H 0.124 0.876 28 H 0.006 0.994 29 H 0.068 0.932 30 H 0.108 0.892 31 H 0.011 0.989 32 H 0.120 0.880 33 H 0.086 0.914 34 H 0.103 0.897 35 H 0.056 0.944 36 H 0.264 0.736 37 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.722 8.870 1.262 18.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.129 5.129 3 C -0.136 4.136 4 C -0.247 4.247 5 C -0.189 4.189 6 C 0.026 3.974 7 N -0.267 5.267 8 C -0.071 4.071 9 C -0.198 4.198 10 S -0.132 6.132 11 C -0.176 4.176 12 C 0.121 3.879 13 H -0.015 1.015 14 C -0.566 4.566 15 H 0.090 0.910 16 C -0.184 4.184 17 N -0.557 5.557 18 Si 0.789 3.211 19 H -0.193 1.193 20 H -0.210 1.210 21 H -0.196 1.196 22 C -0.135 4.135 23 H 0.100 0.900 24 H 0.120 0.880 25 H 0.109 0.891 26 H 0.209 0.791 27 H 0.142 0.858 28 H 0.025 0.975 29 H 0.086 0.914 30 H 0.126 0.874 31 H 0.029 0.971 32 H 0.138 0.862 33 H 0.105 0.895 34 H 0.121 0.879 35 H 0.075 0.925 36 H 0.074 0.926 37 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -16.535 8.682 0.160 18.676 hybrid contribution 0.692 -0.568 1.759 1.974 sum -15.843 8.114 1.919 17.903 Atomic orbital electron populations 1.22268 0.74847 1.05685 1.04237 1.44197 1.07529 1.05280 1.55858 1.22133 0.89544 0.92665 1.09240 1.20908 0.97092 0.94107 1.12622 1.19489 0.93813 0.94304 1.11251 1.20028 0.92186 0.96476 0.88720 1.61332 1.30143 1.24600 1.10669 1.22256 1.01304 0.91852 0.91655 1.23432 0.95304 1.02063 0.99012 1.86428 1.36644 1.43039 1.47045 1.23589 1.04821 0.95863 0.93297 1.19053 0.84365 0.92135 0.92314 1.01518 1.21537 1.00824 1.19567 1.14671 0.90983 1.25783 0.95049 0.99158 0.98427 1.69973 1.05216 1.41490 1.39010 0.85520 0.77307 0.78981 0.79334 1.19261 1.21040 1.19633 1.21703 0.89740 0.92263 1.09752 0.89966 0.87955 0.89100 0.79081 0.85776 0.97541 0.91370 0.87399 0.97056 0.86214 0.89544 0.87921 0.92525 0.92627 0.81489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.77 11.12 127.77 1.42 2.19 16 2 N -0.45 -9.59 3.15 -547.91 -1.72 -11.32 16 3 C -0.01 -0.13 11.43 83.21 0.95 0.83 16 4 C -0.22 -6.50 9.05 22.14 0.20 -6.30 16 5 C -0.18 -6.07 4.19 -19.99 -0.08 -6.16 16 6 C 0.15 6.39 4.89 85.56 0.42 6.80 16 7 N -0.54 -24.05 4.46 -881.17 -3.93 -27.98 16 8 C 0.06 2.28 5.02 86.47 0.43 2.71 16 9 C -0.05 -1.80 6.69 72.06 0.48 -1.31 16 10 S -0.36 -15.92 22.40 -56.49 -1.27 -17.18 16 11 C -0.03 -1.39 5.75 72.07 0.41 -0.98 16 12 C 0.23 12.10 1.85 44.33 0.08 12.18 16 13 H -0.03 -1.98 7.92 -2.38 -0.02 -2.00 16 14 C -0.53 -28.78 7.93 25.60 0.20 -28.58 16 15 H 0.07 3.83 5.64 -2.91 -0.02 3.81 16 16 C 0.02 0.86 5.30 84.66 0.45 1.31 16 17 N -0.92 -53.16 11.28 21.45 0.24 -52.92 16 18 Si 0.96 43.28 29.54 68.60 2.03 45.31 16 19 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 20 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 21 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 22 C 0.00 -0.09 11.35 83.21 0.94 0.85 16 23 H 0.08 0.72 8.14 -2.38 -0.02 0.70 16 24 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 25 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 26 H 0.19 2.73 8.06 -2.91 -0.02 2.70 16 27 H 0.12 3.66 8.06 -2.91 -0.02 3.64 16 28 H 0.01 0.29 8.08 -2.39 -0.02 0.27 16 29 H 0.07 2.96 6.18 -2.39 -0.01 2.94 16 30 H 0.11 3.76 4.82 -2.39 -0.01 3.75 16 31 H 0.01 0.48 7.91 -2.39 -0.02 0.46 16 32 H 0.12 3.55 8.14 -2.38 -0.02 3.53 16 33 H 0.09 3.01 8.14 -2.39 -0.02 2.99 16 34 H 0.10 5.88 6.01 -2.39 -0.01 5.86 16 35 H 0.06 2.89 8.14 -2.39 -0.02 2.87 16 36 H 0.26 14.60 8.31 -92.70 -0.77 13.83 16 37 H 0.17 4.25 8.06 -2.91 -0.02 4.23 16 Total: -1.00 -65.75 304.59 2.31 -63.44 By element: Atomic # 1 Polarization: 16.06 SS G_CDS: 1.05 Total: 17.11 kcal Atomic # 6 Polarization: -22.37 SS G_CDS: 5.92 Total: -16.45 kcal Atomic # 7 Polarization: -86.80 SS G_CDS: -5.42 Total: -92.22 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.31 kcal Atomic # 16 Polarization: -15.92 SS G_CDS: -1.27 Total: -17.18 kcal Total: -65.75 2.31 -63.44 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260134047.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.342 kcal (2) G-P(sol) polarization free energy of solvation -65.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.436 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds