Wall clock time and date at job start Mon Mar 30 2020 05:10:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.33381 * 125.20678 * 2 1 4 4 C 1.38426 * 114.92193 * 180.02562 * 3 2 1 5 5 C 1.50702 * 122.53866 * 179.97438 * 4 3 2 6 6 N 1.46898 * 109.47650 * 89.99736 * 5 4 3 7 7 C 1.46900 * 111.00355 * 190.00114 * 6 5 4 8 8 C 1.53235 * 109.34263 * 187.25389 * 7 6 5 9 9 N 1.47086 * 108.51886 * 306.16546 * 8 7 6 10 10 C 1.36930 * 120.88084 * 231.18344 * 9 8 7 11 11 H 1.08003 * 120.00034 * 27.13616 * 10 9 8 12 12 C 1.38810 * 119.99851 * 206.85031 * 10 9 8 13 13 N 1.31624 * 120.00188 * 17.17041 * 12 10 9 14 14 Si 1.86805 * 119.99970 * 197.16526 * 12 10 9 15 15 H 1.48502 * 109.46715 * 90.00616 * 14 12 10 16 16 H 1.48499 * 109.46981 * 210.00183 * 14 12 10 17 17 H 1.48489 * 109.47231 * 330.00643 * 14 12 10 18 18 C 1.47081 * 118.23455 * 51.46100 * 9 8 7 19 19 C 1.46901 * 110.99711 * 314.29968 * 6 5 4 20 20 C 1.33383 * 114.92372 * 0.24513 * 4 3 2 21 21 S 1.75886 * 125.19760 * 180.02562 * 2 1 3 22 22 H 1.08993 * 109.47221 * 89.99508 * 1 2 3 23 23 H 1.09004 * 109.47313 * 210.00070 * 1 2 3 24 24 H 1.09005 * 109.46700 * 329.99682 * 1 2 3 25 25 H 1.07999 * 122.54073 * 0.06565 * 3 2 1 26 26 H 1.09004 * 109.46903 * 329.99311 * 5 4 3 27 27 H 1.09001 * 109.47175 * 209.99723 * 5 4 3 28 28 H 1.09002 * 109.49350 * 67.29049 * 7 6 5 29 29 H 1.09006 * 109.50970 * 307.22448 * 7 6 5 30 30 H 1.08998 * 109.62971 * 186.46211 * 8 7 6 31 31 H 1.09001 * 109.62881 * 65.87432 * 8 7 6 32 32 H 0.96996 * 120.00064 * 179.97438 * 13 12 10 33 33 H 1.09000 * 109.63185 * 68.25003 * 18 9 8 34 34 H 1.08998 * 109.62646 * 188.83355 * 18 9 8 35 35 H 1.09000 * 109.49497 * 292.70822 * 19 6 5 36 36 H 1.08999 * 109.49178 * 52.78806 * 19 6 5 37 37 H 1.07995 * 125.20809 * 179.75699 * 20 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2760 1.0898 0.0000 4 6 3.6380 0.8427 -0.0006 5 6 4.6624 1.9480 -0.0012 6 7 4.9959 2.3075 1.3835 7 6 5.8060 3.5321 1.4290 8 6 6.2832 3.7719 2.8653 9 7 5.1110 3.7684 3.7537 10 6 4.8961 4.7919 4.6376 11 1 5.2810 5.7784 4.4255 12 6 4.1785 4.5628 5.8035 13 7 3.9959 3.3320 6.2329 14 14 3.4719 6.0012 6.7633 15 1 2.1019 6.2981 6.2732 16 1 3.4171 5.6543 8.2062 17 1 4.3350 7.1946 6.5736 18 6 4.1792 2.6334 3.6718 19 6 3.7818 2.4413 2.1996 20 6 3.9751 -0.4478 -0.0062 21 16 2.5208 -1.4373 -0.0006 22 1 -0.3633 0.0001 -1.0276 23 1 -0.3634 -0.8900 0.5139 24 1 -0.3633 0.8900 0.5139 25 1 1.8670 2.0894 0.0010 26 1 4.2564 2.8193 -0.5152 27 1 5.5619 1.6094 -0.5154 28 1 5.2041 4.3790 1.0995 29 1 6.6693 3.4221 0.7725 30 1 6.7869 4.7365 2.9275 31 1 6.9689 2.9777 3.1607 32 1 3.4947 3.1719 7.0478 33 1 4.6666 1.7319 4.0433 34 1 3.2913 2.8449 4.2675 35 1 3.2079 3.3033 1.8594 36 1 3.1769 1.5398 2.1021 37 1 4.9862 -0.8273 -0.0112 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000294702238.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:10:46 Heat of formation + Delta-G solvation = 45.889023 kcal Electronic energy + Delta-G solvation = -18319.153974 eV Core-core repulsion = 15609.078630 eV Total energy + Delta-G solvation = -2710.075344 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.38093 -38.57919 -35.99383 -33.62777 -32.56213 -31.60995 -29.23737 -27.58752 -26.54824 -24.52079 -24.16519 -22.12423 -20.73681 -19.82945 -18.70601 -17.95109 -17.07254 -16.37438 -16.17011 -15.59085 -15.38633 -15.10077 -14.99736 -14.72719 -14.57127 -14.08243 -13.63933 -13.49620 -13.27486 -13.01718 -12.78634 -12.63867 -12.55402 -12.47485 -12.23783 -12.04874 -11.87124 -11.66471 -11.53473 -11.39618 -10.59665 -9.47620 -9.38642 -9.10223 -8.68411 -7.87922 -5.33388 0.10805 0.75314 1.07405 1.45895 1.47082 1.56472 1.70815 2.50261 3.16524 3.28087 3.68968 3.86157 4.05842 4.26465 4.35735 4.37801 4.40423 4.49485 4.58676 4.66464 4.67756 4.73526 4.76634 4.78924 4.91331 5.04945 5.10410 5.18783 5.24593 5.36116 5.50481 5.59336 5.60933 5.65800 6.19150 6.26844 6.37094 7.12128 7.82996 8.37996 9.18883 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.024267 B = 0.005176 C = 0.004623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.535251 B = 5408.266163 C = 6054.647255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.183 4.183 3 C -0.150 4.150 4 C -0.105 4.105 5 C 0.115 3.885 6 N -0.537 5.537 7 C 0.055 3.945 8 C 0.143 3.857 9 N -0.614 5.614 10 C -0.265 4.265 11 H 0.069 0.931 12 C -0.052 4.052 13 N -0.937 5.937 14 Si 0.969 3.031 15 H -0.285 1.285 16 H -0.294 1.294 17 H -0.267 1.267 18 C 0.188 3.812 19 C 0.060 3.940 20 C -0.203 4.203 21 S 0.098 5.902 22 H 0.089 0.911 23 H 0.076 0.924 24 H 0.078 0.922 25 H 0.134 0.866 26 H 0.042 0.958 27 H 0.097 0.903 28 H 0.025 0.975 29 H 0.098 0.902 30 H 0.063 0.937 31 H 0.015 0.985 32 H 0.250 0.750 33 H -0.007 1.007 34 H 0.054 0.946 35 H 0.015 0.985 36 H 0.073 0.927 37 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.871 -6.934 -16.209 18.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.300 4.300 3 C -0.180 4.180 4 C -0.117 4.117 5 C -0.014 4.014 6 N -0.262 5.262 7 C -0.074 4.074 8 C 0.017 3.983 9 N -0.338 5.338 10 C -0.395 4.395 11 H 0.087 0.913 12 C -0.247 4.247 13 N -0.583 5.583 14 Si 0.797 3.203 15 H -0.212 1.212 16 H -0.221 1.221 17 H -0.192 1.192 18 C 0.062 3.938 19 C -0.069 4.069 20 C -0.339 4.339 21 S 0.362 5.638 22 H 0.108 0.892 23 H 0.095 0.905 24 H 0.096 0.904 25 H 0.151 0.849 26 H 0.060 0.940 27 H 0.116 0.884 28 H 0.043 0.957 29 H 0.117 0.883 30 H 0.081 0.919 31 H 0.033 0.967 32 H 0.059 0.941 33 H 0.011 0.989 34 H 0.072 0.928 35 H 0.033 0.967 36 H 0.092 0.908 37 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -3.925 -8.908 -15.872 18.620 hybrid contribution -0.424 2.681 0.707 2.805 sum -4.350 -6.227 -15.166 16.961 Atomic orbital electron populations 1.20425 0.86178 1.03752 1.03720 1.24761 1.01195 0.95394 1.08676 1.20097 0.92734 0.99684 1.05461 1.18824 0.94360 0.94784 1.03738 1.20848 0.96955 0.94413 0.89177 1.62066 1.19486 1.34661 1.09973 1.22497 0.97446 0.89615 0.97888 1.21148 0.88976 0.98682 0.89447 1.44436 1.23896 1.22995 1.42511 1.19565 1.32095 0.89499 0.98311 0.91331 1.25824 1.02936 0.98607 0.97363 1.70204 1.44365 1.20475 1.23295 0.85235 0.78561 0.79307 0.77174 1.21202 1.22072 1.19151 1.20683 0.93263 0.88016 0.91855 1.22594 0.91108 0.98585 0.94621 1.25590 1.02607 0.95914 1.09832 1.84001 0.96662 1.09465 1.73698 0.89209 0.90497 0.90356 0.84872 0.94008 0.88439 0.95708 0.88340 0.91885 0.96659 0.94086 0.98857 0.92797 0.96702 0.90843 0.80776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.45 10.38 71.24 0.74 -0.71 16 2 C -0.18 -4.33 6.51 24.59 0.16 -4.17 16 3 C -0.15 -3.98 8.03 21.22 0.17 -3.81 16 4 C -0.10 -2.86 4.00 -20.92 -0.08 -2.94 16 5 C 0.12 3.19 5.53 85.56 0.47 3.66 16 6 N -0.54 -19.04 4.77 -898.86 -4.29 -23.33 16 7 C 0.05 1.90 5.58 86.38 0.48 2.38 16 8 C 0.14 6.18 6.69 86.35 0.58 6.76 16 9 N -0.61 -32.44 3.03 -697.23 -2.11 -34.56 16 10 C -0.26 -15.02 9.63 84.03 0.81 -14.21 16 11 H 0.07 3.76 7.88 -2.91 -0.02 3.74 16 12 C -0.05 -2.99 4.93 84.86 0.42 -2.57 16 13 N -0.94 -57.18 11.16 21.65 0.24 -56.94 16 14 Si 0.97 45.67 29.59 68.60 2.03 47.70 16 15 H -0.29 -13.20 7.11 99.48 0.71 -12.49 16 16 H -0.29 -13.90 7.11 99.48 0.71 -13.20 16 17 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 18 C 0.19 9.74 5.45 86.50 0.47 10.21 16 19 C 0.06 2.47 4.87 86.54 0.42 2.90 16 20 C -0.20 -5.11 10.98 66.72 0.73 -4.38 16 21 S 0.10 2.22 23.33 -56.49 -1.32 0.90 16 22 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 23 H 0.08 1.21 8.14 -2.38 -0.02 1.19 16 24 H 0.08 1.37 8.14 -2.38 -0.02 1.35 16 25 H 0.13 3.50 8.06 -2.91 -0.02 3.48 16 26 H 0.04 1.12 8.07 -2.38 -0.02 1.10 16 27 H 0.10 2.29 8.12 -2.39 -0.02 2.27 16 28 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.10 2.73 8.11 -2.38 -0.02 2.71 16 30 H 0.06 2.57 7.95 -2.39 -0.02 2.56 16 31 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.25 14.72 8.31 -92.71 -0.77 13.95 16 33 H -0.01 -0.38 8.14 -2.39 -0.02 -0.40 16 34 H 0.05 3.11 6.12 -2.39 -0.01 3.10 16 35 H 0.01 0.62 8.14 -2.39 -0.02 0.61 16 36 H 0.07 2.90 5.55 -2.39 -0.01 2.89 16 37 H 0.17 3.85 8.06 -2.91 -0.02 3.82 16 Total: -1.00 -65.85 309.00 0.96 -64.88 By element: Atomic # 1 Polarization: 7.19 SS G_CDS: 1.04 Total: 8.23 kcal Atomic # 6 Polarization: -12.25 SS G_CDS: 5.37 Total: -6.88 kcal Atomic # 7 Polarization: -108.67 SS G_CDS: -6.16 Total: -114.83 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 2.03 Total: 47.70 kcal Atomic # 16 Polarization: 2.22 SS G_CDS: -1.32 Total: 0.90 kcal Total: -65.85 0.96 -64.88 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294702238.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.773 kcal (2) G-P(sol) polarization free energy of solvation -65.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.884 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds