Wall clock time and date at job start Mon Mar 30 2020 04:59:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86799 * 119.99987 * 2 1 4 4 H 1.48501 * 109.47070 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47677 * 300.00413 * 3 2 1 6 6 H 1.48501 * 109.46625 * 60.00777 * 3 2 1 7 7 C 1.37875 * 119.99963 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00085 * 179.97438 * 7 2 1 9 9 C 1.50707 * 120.00047 * 359.97438 * 7 2 1 10 10 H 1.09003 * 110.43384 * 57.45923 * 9 7 2 11 11 C 1.54893 * 110.48400 * 294.77704 * 9 7 2 12 12 C 1.54885 * 102.74733 * 203.37979 * 11 9 7 13 13 C 1.54269 * 104.19777 * 37.94052 * 12 11 9 14 14 H 1.09001 * 110.07532 * 217.08439 * 13 12 11 15 15 N 1.46498 * 110.03538 * 95.67105 * 13 12 11 16 16 C 1.34780 * 119.99338 * 87.83117 * 15 13 12 17 17 O 1.21698 * 120.00616 * 0.02562 * 16 15 13 18 18 C 1.46664 * 119.99821 * 180.02562 * 16 15 13 19 19 C 1.37927 * 126.21724 * 180.02562 * 18 16 15 20 20 C 1.39924 * 107.10861 * 180.02562 * 19 18 16 21 21 F 1.35103 * 126.07394 * 180.02562 * 20 19 18 22 22 C 1.35564 * 107.84565 * 0.02562 * 20 19 18 23 23 N 1.35749 * 108.83405 * 0.02562 * 22 20 19 24 24 H 0.96994 * 125.68115 * 180.26593 * 23 22 20 25 25 C 1.53884 * 106.59739 * 336.39135 * 13 12 11 26 26 H 0.97001 * 120.00036 * 359.97438 * 1 2 3 27 27 H 1.09000 * 110.75144 * 321.69018 * 11 9 7 28 28 H 1.08993 * 110.75630 * 85.06465 * 11 9 7 29 29 H 1.08999 * 110.48833 * 279.26467 * 12 11 9 30 30 H 1.08994 * 110.48966 * 156.61729 * 12 11 9 31 31 H 0.96993 * 120.00725 * 267.83786 * 15 13 12 32 32 H 1.08004 * 126.44386 * 0.02991 * 19 18 16 33 33 H 1.07998 * 125.58461 * 180.02562 * 22 20 19 34 34 H 1.09002 * 110.03140 * 119.28616 * 25 13 12 35 35 H 1.08998 * 110.02841 * 240.71607 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3966 -1.2124 6 1 1.8905 2.3963 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 1 0.5846 -2.5539 -0.8614 11 6 0.4539 -2.6649 1.3172 12 6 0.2759 -4.2002 1.4182 13 6 1.6126 -4.7708 0.9009 14 1 1.4339 -5.6794 0.3257 15 7 2.5052 -5.0574 2.0266 16 6 2.4504 -6.2553 2.6420 17 8 1.6598 -7.0990 2.2622 18 6 3.3436 -6.5421 3.7694 19 6 3.3967 -7.7180 4.4883 20 6 4.3839 -7.5579 5.4669 21 9 4.7524 -8.4796 6.3834 22 6 4.9048 -6.3136 5.3319 23 7 4.2795 -5.6860 4.3034 24 1 4.4650 -4.7859 3.9931 25 6 2.2326 -3.6892 -0.0012 26 1 -0.4850 0.8401 0.0004 27 1 1.0252 -2.2856 2.1644 28 1 -0.5135 -2.1676 1.2485 29 1 -0.5495 -4.5309 0.7878 30 1 0.1094 -4.4976 2.4535 31 1 3.1355 -4.3852 2.3292 32 1 2.7905 -8.5970 4.3262 33 1 5.6889 -5.8909 5.9425 34 1 3.1975 -3.3777 0.3987 35 1 2.3539 -4.0726 -1.0143 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000295538700.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:59:50 Heat of formation + Delta-G solvation = -51.926635 kcal Electronic energy + Delta-G solvation = -19595.672585 eV Core-core repulsion = 16315.142460 eV Total energy + Delta-G solvation = -3280.530125 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -48.66094 -41.43749 -39.26562 -37.08663 -33.76695 -32.12932 -30.99493 -29.53332 -28.24370 -27.08142 -24.11487 -23.05306 -21.04674 -20.48852 -19.76755 -19.41479 -18.65118 -16.68086 -16.25807 -15.91209 -15.62450 -15.50263 -15.04013 -14.68861 -14.59664 -14.16021 -13.82872 -13.51931 -13.38174 -12.89073 -12.45272 -11.89891 -11.77149 -11.14914 -11.10437 -10.96790 -10.61925 -10.53994 -10.06671 -9.90693 -9.67253 -9.31520 -9.14151 -8.91319 -8.81305 -8.46642 -8.41896 -6.09260 -4.12988 1.21393 2.24503 2.71824 3.21127 3.22293 3.31371 3.32890 3.33916 4.35424 4.37835 4.67643 4.84590 5.07006 5.22388 5.34775 5.50414 5.55453 5.71061 5.76638 6.16251 6.22334 6.25379 6.49947 6.54445 6.62619 6.65269 6.77475 6.84162 6.97507 7.15048 7.24602 7.60519 7.64732 7.77191 7.93719 8.25352 8.33644 8.89859 9.51624 11.00124 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.028962 B = 0.004081 C = 0.003734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.559190 B = 6859.855155 C = 7497.442773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.063 3.937 3 Si 0.888 3.112 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.285 1.285 7 C -0.516 4.516 8 H 0.055 0.945 9 C 0.047 3.953 10 H 0.034 0.966 11 C -0.100 4.100 12 C -0.137 4.137 13 C 0.140 3.860 14 H 0.081 0.919 15 N -0.711 5.711 16 C 0.583 3.417 17 O -0.529 6.529 18 C -0.018 4.018 19 C -0.136 4.136 20 C 0.000 4.000 21 F -0.129 7.129 22 C -0.003 4.003 23 N -0.526 5.526 24 H 0.428 0.572 25 C -0.123 4.123 26 H 0.260 0.740 27 H 0.045 0.955 28 H 0.068 0.932 29 H 0.064 0.936 30 H 0.051 0.949 31 H 0.394 0.606 32 H 0.159 0.841 33 H 0.182 0.818 34 H 0.060 0.940 35 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.482 -9.678 8.603 15.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.139 4.139 3 Si 0.717 3.283 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.554 4.554 8 H 0.073 0.927 9 C 0.029 3.971 10 H 0.053 0.947 11 C -0.138 4.138 12 C -0.176 4.176 13 C 0.036 3.964 14 H 0.099 0.901 15 N -0.361 5.361 16 C 0.369 3.631 17 O -0.406 6.406 18 C -0.133 4.133 19 C -0.163 4.163 20 C -0.025 4.025 21 F -0.108 7.108 22 C -0.140 4.140 23 N -0.123 5.123 24 H 0.267 0.733 25 C -0.161 4.161 26 H 0.070 0.930 27 H 0.064 0.936 28 H 0.086 0.914 29 H 0.083 0.917 30 H 0.070 0.930 31 H 0.228 0.772 32 H 0.177 0.823 33 H 0.199 0.801 34 H 0.079 0.921 35 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 7.752 -10.026 8.233 15.113 hybrid contribution 0.968 1.585 0.330 1.887 sum 8.720 -8.441 8.563 14.853 Atomic orbital electron populations 1.69965 1.05882 1.26434 1.50205 1.24985 0.94826 0.99036 0.95044 0.86601 0.80059 0.84061 0.77628 1.19886 1.21016 1.21099 1.21186 0.92628 0.90470 1.51155 0.92703 1.19482 0.92473 0.91058 0.94124 0.94749 1.22463 1.01427 0.90453 0.99435 1.22860 0.95749 0.99252 0.99694 1.21872 0.89817 0.98749 0.85918 0.90121 1.46205 1.40332 1.14823 1.34705 1.16973 0.82305 0.82725 0.81145 1.90844 1.38360 1.46688 1.64686 1.20514 0.98779 0.92301 1.01669 1.21298 1.00514 0.98482 0.96010 1.16478 1.02534 0.88684 0.94837 1.91444 1.91002 1.64236 1.64094 1.21741 1.02850 0.93716 0.95646 1.41793 1.29238 1.15259 1.26013 0.73325 1.22624 1.00285 0.95907 0.97242 0.93045 0.93590 0.91366 0.91732 0.93042 0.77227 0.82332 0.80097 0.92138 0.92562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.49 12.29 55.43 0.68 -23.80 16 2 C 0.06 1.66 5.35 -17.82 -0.10 1.57 16 3 Si 0.89 20.26 29.54 -169.99 -5.02 15.24 16 4 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 5 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 6 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 7 C -0.52 -13.17 8.46 -34.44 -0.29 -13.46 16 8 H 0.05 1.37 7.54 -52.49 -0.40 0.97 16 9 C 0.05 1.08 2.72 -90.11 -0.25 0.84 16 10 H 0.03 0.87 8.14 -51.93 -0.42 0.45 16 11 C -0.10 -2.16 5.75 -24.74 -0.14 -2.30 16 12 C -0.14 -2.53 6.54 -25.07 -0.16 -2.70 16 13 C 0.14 2.38 3.25 -66.81 -0.22 2.16 16 14 H 0.08 1.41 7.56 -51.93 -0.39 1.02 16 15 N -0.71 -10.25 5.03 -54.02 -0.27 -10.52 16 16 C 0.58 8.86 7.78 -12.86 -0.10 8.76 16 17 O -0.53 -9.88 16.54 5.19 0.09 -9.79 16 18 C -0.02 -0.23 7.05 -81.98 -0.58 -0.80 16 19 C -0.14 -1.72 10.66 -39.06 -0.42 -2.14 16 20 C 0.00 0.00 7.98 -39.91 -0.32 -0.31 16 21 F -0.13 -1.55 17.32 2.25 0.04 -1.52 16 22 C 0.00 -0.02 11.90 -16.77 -0.20 -0.22 16 23 N -0.53 -4.76 6.00 -9.31 -0.06 -4.82 16 24 H 0.43 2.72 8.19 -40.82 -0.33 2.38 16 25 C -0.12 -2.26 6.13 -25.61 -0.16 -2.42 16 26 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 27 H 0.05 1.01 8.05 -51.93 -0.42 0.59 16 28 H 0.07 1.65 7.55 -51.93 -0.39 1.25 16 29 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 30 H 0.05 0.93 8.04 -51.93 -0.42 0.51 16 31 H 0.39 4.74 7.45 -40.82 -0.30 4.44 16 32 H 0.16 1.96 8.06 -52.48 -0.42 1.54 16 33 H 0.18 0.95 8.06 -52.49 -0.42 0.53 16 34 H 0.06 1.07 7.13 -51.93 -0.37 0.70 16 35 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 301.98 15.07 4.55 4.55 Total: -1.00 -30.20 301.98 -7.19 -37.39 By element: Atomic # 1 Polarization: 8.58 SS G_CDS: -4.27 Total: 4.30 kcal Atomic # 6 Polarization: -8.11 SS G_CDS: -2.92 Total: -11.04 kcal Atomic # 7 Polarization: -39.50 SS G_CDS: 0.35 Total: -39.14 kcal Atomic # 8 Polarization: -9.88 SS G_CDS: 0.09 Total: -9.79 kcal Atomic # 9 Polarization: -1.55 SS G_CDS: 0.04 Total: -1.52 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -5.02 Total: 15.24 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -30.20 -7.19 -37.39 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295538700.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.537 kcal (2) G-P(sol) polarization free energy of solvation -30.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds