Wall clock time and date at job start Mon Mar 30 2020 04:40:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08993 * 109.47650 * 2 1 4 4 N 1.46503 * 109.47077 * 120.00602 * 2 1 3 5 5 C 1.34777 * 119.99828 * 274.99468 * 4 2 1 6 6 O 1.21690 * 119.99753 * 0.02562 * 5 4 2 7 7 C 1.46664 * 119.99656 * 180.02562 * 5 4 2 8 8 C 1.36548 * 125.98233 * 180.02562 * 7 5 4 9 9 C 1.40365 * 106.70375 * 179.97438 * 8 7 5 10 10 C 1.35133 * 107.11591 * 359.97438 * 9 8 7 11 11 O 1.33931 * 108.76672 * 359.75421 * 10 9 8 12 12 C 1.50703 * 109.46900 * 240.00161 * 2 1 3 13 13 O 1.21295 * 120.00391 * 258.59505 * 12 2 1 14 14 N 1.34776 * 120.00013 * 78.59531 * 12 2 1 15 15 C 1.46496 * 120.00024 * 184.10359 * 14 12 2 16 16 C 1.37098 * 120.00047 * 4.09871 * 14 12 2 17 17 H 1.08005 * 119.99622 * 351.06433 * 16 14 12 18 18 C 1.38946 * 120.00247 * 171.06345 * 16 14 12 19 19 N 1.31404 * 119.99881 * 6.34395 * 18 16 14 20 20 Si 1.86800 * 120.00111 * 186.33956 * 18 16 14 21 21 H 1.48509 * 109.46922 * 60.00067 * 20 18 16 22 22 H 1.48496 * 109.47106 * 179.97438 * 20 18 16 23 23 H 1.48498 * 109.47393 * 300.00339 * 20 18 16 24 24 H 1.09004 * 109.46902 * 175.12263 * 1 2 3 25 25 H 1.08993 * 109.46987 * 55.12102 * 1 2 3 26 26 H 1.09000 * 109.46589 * 295.11768 * 1 2 3 27 27 H 0.96999 * 120.00083 * 95.00134 * 4 2 1 28 28 H 1.08001 * 126.64424 * 359.97438 * 8 7 5 29 29 H 1.08001 * 126.44196 * 180.02562 * 9 8 7 30 30 H 1.08000 * 125.61135 * 180.02562 * 10 9 8 31 31 H 1.08997 * 109.47525 * 3.44401 * 15 14 12 32 32 H 1.09002 * 109.47617 * 123.45446 * 15 14 12 33 33 H 1.09003 * 109.46922 * 243.44653 * 15 14 12 34 34 H 0.97003 * 120.00121 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.1471 -0.0185 2.3571 6 8 1.8573 1.1622 2.4119 7 6 2.6365 -0.7099 3.5544 8 6 2.8129 -0.1511 4.7878 9 6 3.2927 -1.1688 5.6269 10 6 3.3866 -2.2901 4.8786 11 8 2.9848 -2.0109 3.6318 12 6 2.0323 -0.7104 -1.2305 13 8 2.4303 -1.8534 -1.1510 14 7 2.0393 -0.0756 -2.4194 15 6 2.4424 -0.7939 -3.6309 16 6 1.6691 1.2422 -2.4951 17 1 1.2357 1.7316 -1.6353 18 6 1.8513 1.9483 -3.6778 19 7 2.2611 1.3242 -4.7591 20 14 1.5137 3.7848 -3.7308 21 1 2.3967 4.4786 -2.7590 22 1 1.7829 4.2983 -5.0978 23 1 0.0937 4.0375 -3.3773 24 1 -0.3633 -1.0240 -0.0874 25 1 -0.3633 0.5876 -0.8430 26 1 -0.3632 0.4362 0.9305 27 1 2.2490 -1.6319 1.1525 28 1 2.6204 0.8751 5.0640 29 1 3.5397 -1.0738 6.6740 30 1 3.7252 -3.2538 5.2294 31 1 2.6406 -1.8373 -3.3857 32 1 1.6420 -0.7397 -4.3688 33 1 3.3447 -0.3390 -4.0397 34 1 2.3880 1.8170 -5.5849 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299529987.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:40:04 Heat of formation + Delta-G solvation = -59.975097 kcal Electronic energy + Delta-G solvation = -20108.797483 eV Core-core repulsion = 16815.545561 eV Total energy + Delta-G solvation = -3293.251922 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -43.63578 -41.23303 -39.98829 -36.99765 -36.01862 -34.03676 -33.53410 -32.32789 -30.40306 -28.43383 -26.78860 -25.37756 -23.46530 -22.66036 -21.34170 -21.10611 -20.05278 -18.91647 -17.95784 -17.36905 -17.08271 -16.95294 -16.29822 -16.03010 -15.93301 -15.59408 -15.09528 -14.59288 -14.21000 -14.07367 -13.91563 -13.55306 -13.49690 -13.35197 -13.17538 -12.75902 -12.71933 -12.48479 -12.33267 -12.10272 -11.49615 -11.07245 -11.03167 -10.57936 -10.24703 -9.99569 -9.64890 -8.28435 -5.96413 0.02912 1.40065 1.44704 1.46788 1.56160 1.64224 1.86702 2.08165 2.13272 2.28789 2.92376 3.09731 3.69913 3.97959 4.01386 4.13219 4.20784 4.21649 4.62096 4.66619 4.78650 4.84740 4.92826 4.96265 5.10492 5.15175 5.20812 5.39268 5.41252 5.44004 5.69631 5.86456 6.32227 6.41700 6.93261 7.01707 7.45296 7.82673 8.65463 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.029260 B = 0.004901 C = 0.004433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.693923 B = 5712.214123 C = 6314.435724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.146 3.854 3 H 0.096 0.904 4 N -0.695 5.695 5 C 0.599 3.401 6 O -0.558 6.558 7 C -0.112 4.112 8 C -0.119 4.119 9 C -0.230 4.230 10 C 0.008 3.992 11 O -0.177 6.177 12 C 0.434 3.566 13 O -0.635 6.635 14 N -0.445 5.445 15 C 0.135 3.865 16 C -0.358 4.358 17 H 0.114 0.886 18 C -0.003 4.003 19 N -0.896 5.896 20 Si 0.992 3.008 21 H -0.270 1.270 22 H -0.279 1.279 23 H -0.260 1.260 24 H 0.060 0.940 25 H 0.078 0.922 26 H 0.072 0.928 27 H 0.413 0.587 28 H 0.163 0.837 29 H 0.190 0.810 30 H 0.256 0.744 31 H 0.036 0.964 32 H 0.056 0.944 33 H 0.056 0.944 34 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.054 -3.478 15.674 16.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.038 3.962 3 H 0.113 0.887 4 N -0.346 5.346 5 C 0.387 3.613 6 O -0.439 6.439 7 C -0.163 4.163 8 C -0.140 4.140 9 C -0.248 4.248 10 C -0.061 4.061 11 O -0.073 6.073 12 C 0.223 3.777 13 O -0.525 6.525 14 N -0.161 5.161 15 C -0.008 4.008 16 C -0.484 4.484 17 H 0.132 0.868 18 C -0.205 4.205 19 N -0.534 5.534 20 Si 0.815 3.185 21 H -0.196 1.196 22 H -0.204 1.204 23 H -0.184 1.184 24 H 0.079 0.921 25 H 0.097 0.903 26 H 0.091 0.909 27 H 0.250 0.750 28 H 0.181 0.819 29 H 0.207 0.793 30 H 0.272 0.728 31 H 0.054 0.946 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 0.057 -3.336 15.160 15.522 hybrid contribution 0.109 0.482 -0.519 0.717 sum 0.166 -2.854 14.640 14.917 Atomic orbital electron populations 1.21928 0.91807 1.02790 1.03424 1.20507 0.96444 0.96680 0.82527 0.88658 1.45759 1.65526 1.14978 1.08386 1.16868 0.77324 0.85535 0.81565 1.90828 1.52908 1.15401 1.84739 1.21743 1.14067 0.83615 0.96893 1.22273 0.98761 1.02078 0.90839 1.22237 1.07706 0.91863 1.03038 1.25466 0.98149 1.02641 0.79867 1.84103 1.64045 1.25665 1.33467 1.20266 0.84913 0.87169 0.85401 1.90475 1.55976 1.20104 1.85993 1.43884 1.55255 1.10967 1.05954 1.21389 1.00816 0.92874 0.85701 1.20155 1.42207 0.85363 1.00725 0.86830 1.26198 0.95347 1.04610 0.94346 1.70305 1.44441 1.37400 1.01293 0.84989 0.79465 0.76431 0.77594 1.19555 1.20378 1.18438 0.92110 0.90295 0.90895 0.75001 0.81920 0.79290 0.72844 0.94567 0.92493 0.92522 0.91755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.15 9.27 71.98 0.67 -4.49 16 2 C 0.15 6.14 2.13 44.25 0.09 6.23 16 3 H 0.10 4.28 6.23 -2.39 -0.01 4.26 16 4 N -0.70 -26.57 5.03 -450.09 -2.27 -28.84 16 5 C 0.60 22.01 7.75 86.44 0.67 22.68 16 6 O -0.56 -23.08 16.53 -4.32 -0.07 -23.16 16 7 C -0.11 -3.35 7.13 24.08 0.17 -3.17 16 8 C -0.12 -2.89 10.62 22.39 0.24 -2.65 16 9 C -0.23 -3.80 10.87 22.07 0.24 -3.56 16 10 C 0.01 0.13 12.08 67.10 0.81 0.94 16 11 O -0.18 -4.56 10.40 -4.98 -0.05 -4.61 16 12 C 0.43 21.24 6.89 87.66 0.60 21.85 16 13 O -0.64 -33.16 15.25 -3.08 -0.05 -33.20 16 14 N -0.44 -22.88 3.03 -658.89 -1.99 -24.88 16 15 C 0.14 6.87 8.87 127.77 1.13 8.00 16 16 C -0.36 -18.00 8.75 84.04 0.74 -17.27 16 17 H 0.11 5.37 5.32 -2.91 -0.02 5.36 16 18 C 0.00 -0.14 5.46 84.93 0.46 0.33 16 19 N -0.90 -46.04 9.48 21.66 0.21 -45.84 16 20 Si 0.99 39.24 29.56 68.60 2.03 41.27 16 21 H -0.27 -10.66 7.11 99.48 0.71 -9.95 16 22 H -0.28 -10.81 7.11 99.48 0.71 -10.10 16 23 H -0.26 -9.80 7.11 99.48 0.71 -9.09 16 24 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 25 H 0.08 2.92 6.99 -2.39 -0.02 2.90 16 26 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 27 H 0.41 15.49 7.48 -92.71 -0.69 14.80 16 28 H 0.16 3.72 8.06 -2.91 -0.02 3.70 16 29 H 0.19 1.73 8.06 -2.91 -0.02 1.71 16 30 H 0.26 1.32 8.06 -2.91 -0.02 1.30 16 31 H 0.04 1.79 6.92 -2.39 -0.02 1.77 16 32 H 0.06 2.93 7.21 -2.39 -0.02 2.91 16 33 H 0.06 2.99 6.91 -2.39 -0.02 2.97 16 34 H 0.27 13.22 8.31 -92.71 -0.77 12.45 16 Total: -1.00 -64.89 296.24 4.08 -60.81 By element: Atomic # 1 Polarization: 29.10 SS G_CDS: 0.45 Total: 29.55 kcal Atomic # 6 Polarization: 23.07 SS G_CDS: 5.83 Total: 28.89 kcal Atomic # 7 Polarization: -95.50 SS G_CDS: -4.05 Total: -99.55 kcal Atomic # 8 Polarization: -60.80 SS G_CDS: -0.17 Total: -60.97 kcal Atomic # 14 Polarization: 39.24 SS G_CDS: 2.03 Total: 41.27 kcal Total: -64.89 4.08 -60.81 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299529987.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.830 kcal (2) G-P(sol) polarization free energy of solvation -64.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds