Wall clock time and date at job start Mon Mar 30 2020 05:29:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.46901 * 2 1 4 4 N 1.46496 * 109.47234 * 119.99509 * 2 1 3 5 5 C 1.34777 * 120.00258 * 275.00436 * 4 2 1 6 6 O 1.21440 * 120.00096 * 359.97438 * 5 4 2 7 7 C 1.48836 * 119.99937 * 179.97438 * 5 4 2 8 8 O 1.21503 * 119.99791 * 359.72419 * 7 5 4 9 9 N 1.34777 * 119.99937 * 179.97438 * 7 5 4 10 10 C 1.36115 * 119.99825 * 180.02562 * 9 7 5 11 11 H 1.07999 * 120.00133 * 0.02562 * 10 9 7 12 12 C 1.39592 * 119.99617 * 179.97438 * 10 9 7 13 13 N 1.31008 * 120.00327 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 119.99583 * 180.02562 * 12 10 9 15 15 H 1.48501 * 109.47474 * 90.00288 * 14 12 10 16 16 H 1.48507 * 109.46754 * 210.00022 * 14 12 10 17 17 H 1.48498 * 109.47278 * 329.99853 * 14 12 10 18 18 C 1.50694 * 109.47384 * 239.99869 * 2 1 3 19 19 C 1.39872 * 126.03790 * 280.02735 * 18 2 1 20 20 N 1.30838 * 108.19984 * 179.97438 * 19 18 2 21 21 N 1.40082 * 108.20758 * 0.02562 * 20 19 18 22 22 C 1.46508 * 126.03932 * 180.02562 * 21 20 19 23 23 C 1.34949 * 107.92546 * 359.75328 * 21 20 19 24 24 H 1.09002 * 109.47121 * 60.00104 * 1 2 3 25 25 H 1.08994 * 109.47090 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47093 * 300.00316 * 1 2 3 27 27 H 0.96999 * 119.99694 * 94.99826 * 4 2 1 28 28 H 0.96999 * 120.00047 * 359.97438 * 9 7 5 29 29 H 0.96996 * 119.99878 * 179.97438 * 13 12 10 30 30 H 1.07999 * 125.90073 * 359.95445 * 19 18 2 31 31 H 1.08996 * 109.47180 * 90.01592 * 22 21 20 32 32 H 1.08996 * 109.47246 * 210.02568 * 22 21 20 33 33 H 1.08999 * 109.46507 * 330.02274 * 22 21 20 34 34 H 1.08002 * 126.12812 * 180.23864 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 2.1470 -0.0181 2.3571 6 8 1.8585 1.1603 2.4116 7 6 2.6426 -0.7198 3.5725 8 8 2.9264 -1.9000 3.5193 9 7 2.7718 -0.0473 4.7334 10 6 3.2255 -0.6890 5.8447 11 1 3.4824 -1.7368 5.7962 12 6 3.3598 0.0078 7.0469 13 7 3.0496 1.2792 7.1053 14 14 3.9832 -0.8726 8.5719 15 1 5.4632 -0.7683 8.6336 16 1 3.3919 -0.2461 9.7816 17 1 3.5898 -2.3034 8.5131 18 6 2.0324 -0.7104 -1.2304 19 6 2.1210 -2.0957 -1.4022 20 7 2.6015 -2.3294 -2.5965 21 7 2.8347 -1.0984 -3.2231 22 6 3.3708 -0.9062 -4.5730 23 6 2.4726 -0.1209 -2.3661 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 2.2490 -1.6316 1.1527 28 1 2.5421 0.8941 4.7766 29 1 3.1425 1.7632 7.9408 30 1 1.8415 -2.8432 -0.6746 31 1 2.5494 -0.8714 -5.2886 32 1 3.9276 0.0300 -4.6129 33 1 4.0343 -1.7344 -4.8216 34 1 2.5267 0.9415 -2.5523 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000302611529.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:29:46 Heat of formation + Delta-G solvation = 5.944971 kcal Electronic energy + Delta-G solvation = -19434.649225 eV Core-core repulsion = 16176.548563 eV Total energy + Delta-G solvation = -3258.100662 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 1.81 seconds Orbital eigenvalues (eV) -41.39116 -39.42540 -37.29179 -35.47211 -34.18471 -33.07221 -31.45883 -30.98035 -29.13973 -26.79871 -25.86716 -23.78915 -22.18764 -21.29567 -19.99420 -19.24038 -18.31075 -17.45495 -16.45775 -15.83003 -15.62804 -15.01420 -14.67730 -14.53368 -14.29231 -14.02665 -13.69793 -13.29461 -13.00007 -12.82214 -12.75713 -12.66115 -12.10706 -11.83595 -11.71737 -11.43732 -11.17172 -10.54481 -10.49958 -10.39034 -10.28800 -9.68644 -9.55482 -8.79002 -8.51571 -8.20174 -8.18873 -6.63829 -3.95970 1.72856 2.35224 2.49822 2.65313 3.17371 3.18592 3.24098 3.53815 4.09652 4.30820 4.34345 4.68239 4.84816 4.89042 5.04912 5.11063 5.21181 5.22554 5.34027 5.48636 5.61181 5.72429 5.94508 6.06359 6.18873 6.34473 6.51886 6.80322 6.90809 7.34264 7.55074 7.74654 7.94546 8.37406 8.68019 9.00117 9.35982 9.89223 10.51175 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.040401 B = 0.003657 C = 0.003521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.880685 B = 7655.659356 C = 7950.415669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.222 3.778 3 H 0.091 0.909 4 N -0.707 5.707 5 C 0.516 3.484 6 O -0.547 6.547 7 C 0.395 3.605 8 O -0.597 6.597 9 N -0.500 5.500 10 C -0.306 4.306 11 H 0.112 0.888 12 C 0.031 3.969 13 N -0.870 5.870 14 Si 0.938 3.062 15 H -0.274 1.274 16 H -0.280 1.280 17 H -0.265 1.265 18 C -0.240 4.240 19 C 0.061 3.939 20 N -0.296 5.296 21 N -0.379 5.379 22 C 0.103 3.897 23 C 0.066 3.934 24 H 0.061 0.939 25 H 0.057 0.943 26 H 0.064 0.936 27 H 0.408 0.592 28 H 0.405 0.595 29 H 0.280 0.720 30 H 0.185 0.815 31 H 0.073 0.927 32 H 0.087 0.913 33 H 0.088 0.912 34 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.922 -0.476 -18.455 18.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.116 3.884 3 H 0.109 0.891 4 N -0.360 5.360 5 C 0.300 3.700 6 O -0.425 6.425 7 C 0.179 3.821 8 O -0.485 6.485 9 N -0.135 5.135 10 C -0.436 4.436 11 H 0.130 0.870 12 C -0.176 4.176 13 N -0.508 5.508 14 Si 0.764 3.236 15 H -0.199 1.199 16 H -0.206 1.206 17 H -0.189 1.189 18 C -0.252 4.252 19 C -0.126 4.126 20 N -0.117 5.117 21 N -0.161 5.161 22 C -0.038 4.038 23 C -0.081 4.081 24 H 0.080 0.920 25 H 0.076 0.924 26 H 0.083 0.917 27 H 0.244 0.756 28 H 0.240 0.760 29 H 0.090 0.910 30 H 0.201 0.799 31 H 0.092 0.908 32 H 0.105 0.895 33 H 0.107 0.893 34 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -1.528 -1.102 -19.307 19.399 hybrid contribution 0.039 0.463 1.227 1.312 sum -1.490 -0.639 -18.080 18.153 Atomic orbital electron populations 1.22155 0.94798 1.02264 1.02202 1.18983 0.93381 0.95887 0.80177 0.89127 1.45743 1.67077 1.14741 1.08467 1.20656 0.77664 0.86680 0.84982 1.90677 1.50290 1.16073 1.85423 1.18998 0.90563 0.87980 0.84531 1.90581 1.57750 1.15452 1.84760 1.41555 1.51561 1.13140 1.07207 1.19878 1.40236 0.97243 0.86269 0.87005 1.25573 0.96560 0.95556 0.99915 1.69481 1.44241 1.08267 1.28820 0.85734 0.78951 0.79608 0.79333 1.19942 1.20553 1.18901 1.20157 1.13699 0.93705 0.97671 1.23765 0.98333 0.95961 0.94494 1.77373 1.22256 1.03213 1.08906 1.48469 1.50049 1.03987 1.13609 1.21837 0.99537 1.03679 0.78789 1.22260 0.99621 0.95497 0.90676 0.92033 0.92390 0.91673 0.75595 0.76004 0.90973 0.79857 0.90846 0.89485 0.89309 0.80700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.98 9.47 37.16 0.35 -1.63 16 2 C 0.22 3.10 3.00 -69.09 -0.21 2.90 16 3 H 0.09 1.33 7.57 -51.93 -0.39 0.94 16 4 N -0.71 -12.18 5.05 -55.57 -0.28 -12.46 16 5 C 0.52 11.16 7.83 -11.87 -0.09 11.07 16 6 O -0.55 -12.61 16.13 5.42 0.09 -12.53 16 7 C 0.40 10.00 7.82 -11.87 -0.09 9.90 16 8 O -0.60 -16.08 16.03 5.36 0.09 -15.99 16 9 N -0.50 -13.44 5.25 -11.59 -0.06 -13.50 16 10 C -0.31 -8.47 9.67 -15.15 -0.15 -8.62 16 11 H 0.11 3.16 7.15 -52.49 -0.38 2.79 16 12 C 0.03 0.80 5.51 -17.40 -0.10 0.71 16 13 N -0.87 -23.40 13.03 55.53 0.72 -22.68 16 14 Si 0.94 20.20 29.56 -169.99 -5.02 15.17 16 15 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 16 H -0.28 -5.88 7.11 56.52 0.40 -5.47 16 17 H -0.26 -5.66 7.11 56.52 0.40 -5.25 16 18 C -0.24 -2.98 5.09 -105.05 -0.53 -3.52 16 19 C 0.06 0.78 11.20 -17.36 -0.19 0.59 16 20 N -0.30 -3.93 12.58 30.63 0.39 -3.55 16 21 N -0.38 -4.03 4.01 -68.16 -0.27 -4.30 16 22 C 0.10 0.62 11.47 59.85 0.69 1.30 16 23 C 0.07 0.69 11.40 -17.22 -0.20 0.49 16 24 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 27 H 0.41 6.78 7.09 -40.82 -0.29 6.49 16 28 H 0.40 10.93 7.35 -40.82 -0.30 10.63 16 29 H 0.28 6.98 8.30 -40.82 -0.34 6.64 16 30 H 0.18 2.06 7.72 -52.49 -0.41 1.65 16 31 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 32 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.09 0.51 8.14 -51.93 -0.42 0.08 16 34 H 0.18 1.23 8.06 -52.49 -0.42 0.81 16 LS Contribution 307.50 15.07 4.63 4.63 Total: -1.00 -33.17 307.50 -4.10 -37.27 By element: Atomic # 1 Polarization: 18.60 SS G_CDS: -3.86 Total: 14.74 kcal Atomic # 6 Polarization: 13.72 SS G_CDS: -0.52 Total: 13.19 kcal Atomic # 7 Polarization: -56.99 SS G_CDS: 0.49 Total: -56.49 kcal Atomic # 8 Polarization: -28.69 SS G_CDS: 0.17 Total: -28.52 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.02 Total: 15.17 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -33.17 -4.10 -37.27 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000302611529.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.217 kcal (2) G-P(sol) polarization free energy of solvation -33.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.272 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.81 seconds