Wall clock time and date at job start Mon Mar 30 2020 05:29:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.46901 * 2 1 4 4 N 1.46496 * 109.47234 * 119.99509 * 2 1 3 5 5 C 1.34777 * 120.00258 * 275.00436 * 4 2 1 6 6 O 1.21440 * 120.00096 * 359.97438 * 5 4 2 7 7 C 1.48836 * 119.99937 * 179.97438 * 5 4 2 8 8 O 1.21503 * 119.99791 * 359.72419 * 7 5 4 9 9 N 1.34777 * 119.99937 * 179.97438 * 7 5 4 10 10 C 1.36115 * 119.99825 * 180.02562 * 9 7 5 11 11 H 1.07999 * 120.00133 * 0.02562 * 10 9 7 12 12 C 1.39592 * 119.99617 * 179.97438 * 10 9 7 13 13 N 1.31008 * 120.00327 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 119.99583 * 180.02562 * 12 10 9 15 15 H 1.48501 * 109.47474 * 90.00288 * 14 12 10 16 16 H 1.48507 * 109.46754 * 210.00022 * 14 12 10 17 17 H 1.48498 * 109.47278 * 329.99853 * 14 12 10 18 18 C 1.50694 * 109.47384 * 239.99869 * 2 1 3 19 19 C 1.39872 * 126.03790 * 280.02735 * 18 2 1 20 20 N 1.30838 * 108.19984 * 179.97438 * 19 18 2 21 21 N 1.40082 * 108.20758 * 0.02562 * 20 19 18 22 22 C 1.46508 * 126.03932 * 180.02562 * 21 20 19 23 23 C 1.34949 * 107.92546 * 359.75328 * 21 20 19 24 24 H 1.09002 * 109.47121 * 60.00104 * 1 2 3 25 25 H 1.08994 * 109.47090 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47093 * 300.00316 * 1 2 3 27 27 H 0.96999 * 119.99694 * 94.99826 * 4 2 1 28 28 H 0.96999 * 120.00047 * 359.97438 * 9 7 5 29 29 H 0.96996 * 119.99878 * 179.97438 * 13 12 10 30 30 H 1.07999 * 125.90073 * 359.95445 * 19 18 2 31 31 H 1.08996 * 109.47180 * 90.01592 * 22 21 20 32 32 H 1.08996 * 109.47246 * 210.02568 * 22 21 20 33 33 H 1.08999 * 109.46507 * 330.02274 * 22 21 20 34 34 H 1.08002 * 126.12812 * 180.23864 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 2.1470 -0.0181 2.3571 6 8 1.8585 1.1603 2.4116 7 6 2.6426 -0.7198 3.5725 8 8 2.9264 -1.9000 3.5193 9 7 2.7718 -0.0473 4.7334 10 6 3.2255 -0.6890 5.8447 11 1 3.4824 -1.7368 5.7962 12 6 3.3598 0.0078 7.0469 13 7 3.0496 1.2792 7.1053 14 14 3.9832 -0.8726 8.5719 15 1 5.4632 -0.7683 8.6336 16 1 3.3919 -0.2461 9.7816 17 1 3.5898 -2.3034 8.5131 18 6 2.0324 -0.7104 -1.2304 19 6 2.1210 -2.0957 -1.4022 20 7 2.6015 -2.3294 -2.5965 21 7 2.8347 -1.0984 -3.2231 22 6 3.3708 -0.9062 -4.5730 23 6 2.4726 -0.1209 -2.3661 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 2.2490 -1.6316 1.1527 28 1 2.5421 0.8941 4.7766 29 1 3.1425 1.7632 7.9408 30 1 1.8415 -2.8432 -0.6746 31 1 2.5494 -0.8714 -5.2886 32 1 3.9276 0.0300 -4.6129 33 1 4.0343 -1.7344 -4.8216 34 1 2.5267 0.9415 -2.5523 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000302611529.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:29:45 Heat of formation + Delta-G solvation = -19.628784 kcal Electronic energy + Delta-G solvation = -19435.758186 eV Core-core repulsion = 16176.548563 eV Total energy + Delta-G solvation = -3259.209624 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.29134 -41.18186 -39.17128 -36.91916 -36.13400 -33.94621 -33.43191 -32.28025 -30.09291 -27.86170 -27.50065 -25.33115 -23.52146 -22.25801 -21.10157 -20.83226 -20.31632 -18.94391 -17.71095 -17.55324 -16.72311 -16.51417 -16.33778 -15.90179 -15.71880 -15.28853 -14.92290 -14.78381 -14.54133 -13.88614 -13.74096 -13.65806 -13.38159 -13.31963 -12.95183 -12.85415 -12.54771 -12.43850 -12.20285 -12.08927 -11.64377 -11.48684 -10.40320 -10.26214 -10.23602 -10.17474 -9.40493 -8.63571 -6.08276 0.65397 0.89760 1.42263 1.48452 1.55790 1.61977 1.69510 2.00644 2.33167 2.42235 3.18368 3.34380 3.53981 3.97127 4.05479 4.16832 4.27630 4.34158 4.42281 4.47526 4.72159 4.76631 4.78511 4.94854 5.05831 5.27566 5.30390 5.48086 5.59090 5.71627 6.10112 6.22624 6.44070 6.67280 6.85090 7.06958 7.32075 7.83750 8.52323 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.040401 B = 0.003657 C = 0.003521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.880685 B = 7655.659356 C = 7950.415669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.224 3.776 3 H 0.088 0.912 4 N -0.687 5.687 5 C 0.523 3.477 6 O -0.563 6.563 7 C 0.389 3.611 8 O -0.617 6.617 9 N -0.512 5.512 10 C -0.346 4.346 11 H 0.098 0.902 12 C -0.005 4.005 13 N -0.896 5.896 14 Si 1.009 2.991 15 H -0.265 1.265 16 H -0.266 1.266 17 H -0.264 1.264 18 C -0.262 4.262 19 C 0.049 3.951 20 N -0.329 5.329 21 N -0.377 5.377 22 C 0.092 3.908 23 C 0.082 3.918 24 H 0.088 0.912 25 H 0.061 0.939 26 H 0.043 0.957 27 H 0.412 0.588 28 H 0.401 0.599 29 H 0.289 0.711 30 H 0.187 0.813 31 H 0.090 0.910 32 H 0.115 0.885 33 H 0.088 0.912 34 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.699 -0.025 -19.668 19.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.119 3.881 3 H 0.106 0.894 4 N -0.339 5.339 5 C 0.305 3.695 6 O -0.442 6.442 7 C 0.174 3.826 8 O -0.507 6.507 9 N -0.146 5.146 10 C -0.476 4.476 11 H 0.116 0.884 12 C -0.209 4.209 13 N -0.534 5.534 14 Si 0.830 3.170 15 H -0.190 1.190 16 H -0.191 1.191 17 H -0.188 1.188 18 C -0.275 4.275 19 C -0.136 4.136 20 N -0.151 5.151 21 N -0.158 5.158 22 C -0.047 4.047 23 C -0.067 4.067 24 H 0.107 0.893 25 H 0.080 0.920 26 H 0.062 0.938 27 H 0.248 0.752 28 H 0.236 0.764 29 H 0.099 0.901 30 H 0.204 0.796 31 H 0.109 0.891 32 H 0.134 0.866 33 H 0.107 0.893 34 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -1.310 -0.665 -20.579 20.631 hybrid contribution -0.033 0.336 1.410 1.450 sum -1.343 -0.329 -19.169 19.219 Atomic orbital electron populations 1.22107 0.93651 1.02615 1.02441 1.19139 0.94196 0.95480 0.79249 0.89402 1.45773 1.65187 1.14806 1.08181 1.19974 0.78080 0.86330 0.85078 1.90669 1.51433 1.16461 1.85673 1.19709 0.89548 0.87922 0.85387 1.90547 1.58332 1.16421 1.85406 1.41639 1.52174 1.12959 1.07782 1.19967 1.42840 0.97125 0.87623 0.88442 1.26514 0.95768 0.96215 1.02373 1.69545 1.44291 1.09429 1.30122 0.84713 0.78646 0.78297 0.75372 1.19011 1.19093 1.18844 1.20006 1.16030 0.93580 0.97847 1.23908 0.98539 0.96458 0.94731 1.77319 1.23336 1.05075 1.09328 1.48857 1.48978 1.03206 1.14799 1.22235 1.00452 1.05167 0.76878 1.22783 0.97268 0.96976 0.89624 0.89319 0.92011 0.93806 0.75186 0.76432 0.90136 0.79583 0.89141 0.86616 0.89313 0.77096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.61 9.47 71.98 0.68 -2.92 16 2 C 0.22 5.99 3.00 44.24 0.13 6.12 16 3 H 0.09 2.44 7.57 -2.39 -0.02 2.42 16 4 N -0.69 -23.53 5.05 -448.04 -2.26 -25.79 16 5 C 0.52 22.84 7.83 87.08 0.68 23.53 16 6 O -0.56 -26.13 16.13 -3.53 -0.06 -26.18 16 7 C 0.39 20.20 7.82 87.08 0.68 20.88 16 8 O -0.62 -34.04 16.03 -3.72 -0.06 -34.10 16 9 N -0.51 -28.32 5.25 -308.87 -1.62 -29.94 16 10 C -0.35 -19.65 9.67 84.36 0.82 -18.83 16 11 H 0.10 5.70 7.15 -2.91 -0.02 5.68 16 12 C 0.00 -0.24 5.51 85.14 0.47 0.23 16 13 N -0.90 -48.40 13.03 21.77 0.28 -48.12 16 14 Si 1.01 41.11 29.56 68.60 2.03 43.13 16 15 H -0.27 -10.41 7.11 99.48 0.71 -9.70 16 16 H -0.27 -10.21 7.11 99.48 0.71 -9.50 16 17 H -0.26 -10.66 7.11 99.48 0.71 -9.96 16 18 C -0.26 -6.06 5.09 -20.14 -0.10 -6.17 16 19 C 0.05 1.22 11.20 85.24 0.95 2.17 16 20 N -0.33 -8.34 12.58 -57.02 -0.72 -9.05 16 21 N -0.38 -7.06 4.01 -369.56 -1.48 -8.54 16 22 C 0.09 0.82 11.47 127.77 1.47 2.28 16 23 C 0.08 1.45 11.40 83.54 0.95 2.41 16 24 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 25 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 26 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 27 H 0.41 13.66 7.09 -92.71 -0.66 13.01 16 28 H 0.40 22.36 7.35 -92.71 -0.68 21.68 16 29 H 0.29 14.25 8.30 -92.71 -0.77 13.48 16 30 H 0.19 4.19 7.72 -2.91 -0.02 4.17 16 31 H 0.09 0.53 8.14 -2.39 -0.02 0.52 16 32 H 0.12 0.38 8.14 -2.39 -0.02 0.36 16 33 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 34 H 0.21 2.05 8.06 -2.91 -0.02 2.02 16 Total: -1.00 -72.30 307.50 2.66 -69.65 By element: Atomic # 1 Polarization: 39.43 SS G_CDS: -0.19 Total: 39.24 kcal Atomic # 6 Polarization: 22.97 SS G_CDS: 6.73 Total: 29.70 kcal Atomic # 7 Polarization: -115.64 SS G_CDS: -5.80 Total: -121.44 kcal Atomic # 8 Polarization: -60.16 SS G_CDS: -0.12 Total: -60.28 kcal Atomic # 14 Polarization: 41.11 SS G_CDS: 2.03 Total: 43.13 kcal Total: -72.30 2.66 -69.65 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000302611529.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.018 kcal (2) G-P(sol) polarization free energy of solvation -72.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds