Wall clock time and date at job start Mon Mar 30 2020 05:29:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.46971 * 2 1 4 4 N 1.46498 * 109.47145 * 239.99317 * 2 1 3 5 5 C 1.34775 * 119.99703 * 85.00365 * 4 2 1 6 6 O 1.21438 * 120.00163 * 359.97438 * 5 4 2 7 7 C 1.48836 * 119.99826 * 179.97438 * 5 4 2 8 8 O 1.21503 * 120.00069 * 0.02562 * 7 5 4 9 9 N 1.34775 * 119.99826 * 179.97438 * 7 5 4 10 10 C 1.36118 * 120.00031 * 180.02562 * 9 7 5 11 11 H 1.08000 * 119.99759 * 359.97438 * 10 9 7 12 12 C 1.39588 * 120.00494 * 179.97438 * 10 9 7 13 13 N 1.31008 * 120.00238 * 179.97438 * 12 10 9 14 14 Si 1.86801 * 119.99445 * 359.97438 * 12 10 9 15 15 H 1.48503 * 109.47405 * 90.00195 * 14 12 10 16 16 H 1.48508 * 109.46774 * 209.99939 * 14 12 10 17 17 H 1.48503 * 109.47230 * 329.99558 * 14 12 10 18 18 C 1.50706 * 109.46912 * 119.99294 * 2 1 3 19 19 C 1.39870 * 126.03571 * 80.02569 * 18 2 1 20 20 N 1.30836 * 108.20019 * 179.71573 * 19 18 2 21 21 N 1.40090 * 108.20534 * 0.24683 * 20 19 18 22 22 C 1.46502 * 126.03499 * 179.97438 * 21 20 19 23 23 C 1.34942 * 107.92509 * 359.97438 * 21 20 19 24 24 H 1.09000 * 109.46911 * 60.00623 * 1 2 3 25 25 H 1.09008 * 109.47173 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47080 * 300.00612 * 1 2 3 27 27 H 0.97000 * 120.00164 * 264.99872 * 4 2 1 28 28 H 0.97000 * 120.00133 * 359.97438 * 9 7 5 29 29 H 0.97002 * 119.99886 * 179.97438 * 13 12 10 30 30 H 1.08002 * 125.90382 * 359.97438 * 19 18 2 31 31 H 1.09002 * 109.47159 * 89.97587 * 22 21 20 32 32 H 1.08999 * 109.46542 * 209.97099 * 22 21 20 33 33 H 1.08999 * 109.47324 * 329.96897 * 22 21 20 34 34 H 1.08002 * 126.12737 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6907 -1.1961 5 6 2.1471 -0.0185 -2.3571 6 8 1.8579 1.1597 -2.4118 7 6 2.6438 -0.7201 -3.5721 8 8 2.9327 -1.8990 -3.5174 9 7 2.7720 -0.0479 -4.7332 10 6 3.2258 -0.6896 -5.8446 11 1 3.4834 -1.7373 -5.7958 12 6 3.3581 0.0063 -7.0473 13 7 3.7953 -0.6113 -8.1168 14 14 2.9119 1.8183 -7.1318 15 1 4.1083 2.6382 -6.8130 16 1 2.4363 2.1476 -8.4996 17 1 1.8363 2.1095 -6.1502 18 6 2.0323 -0.7103 1.2306 19 6 2.1218 -2.0955 1.4022 20 7 2.6081 -2.3291 2.5942 21 7 2.8384 -1.0980 3.2218 22 6 3.3791 -0.9056 4.5698 23 6 2.4743 -0.1207 2.3655 24 1 -0.3633 0.5137 -0.8901 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 2.2491 -1.6319 -1.1524 28 1 2.5403 0.8930 -4.7771 29 1 3.8869 -0.1277 -8.9527 30 1 1.8422 -2.8432 0.6747 31 1 4.4660 -0.8405 4.5194 32 1 2.9791 0.0155 4.9935 33 1 3.0943 -1.7487 5.1992 34 1 2.5297 0.9418 2.5512 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000302611530.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:29:52 Heat of formation + Delta-G solvation = 12.576944 kcal Electronic energy + Delta-G solvation = -19498.366339 eV Core-core repulsion = 16240.553260 eV Total energy + Delta-G solvation = -3257.813078 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.44226 -39.60107 -37.47183 -35.59502 -34.22708 -33.12214 -31.89577 -31.11826 -29.20691 -26.84664 -26.01029 -23.75151 -22.14455 -21.31392 -20.03002 -19.34963 -18.94394 -17.45711 -16.47365 -15.98920 -15.67387 -15.12090 -14.84990 -14.65639 -14.42397 -13.96836 -13.49928 -13.34908 -13.04660 -12.86984 -12.83734 -12.74314 -12.41239 -12.22550 -11.88240 -11.50572 -11.25921 -10.70897 -10.59125 -10.50601 -10.07122 -9.74115 -9.59921 -8.90507 -8.59098 -8.38750 -8.34660 -6.55830 -3.97345 1.68368 2.30081 2.34950 2.59779 3.06493 3.09801 3.12496 3.40676 3.98217 4.18986 4.27186 4.62812 4.77111 4.82424 4.87989 5.07501 5.11940 5.15664 5.26466 5.40431 5.55209 5.64168 5.73089 5.88877 6.08178 6.27238 6.46478 6.73241 6.80694 7.29524 7.50714 7.72294 7.95799 8.28729 8.55338 8.78291 9.22715 9.65118 10.54397 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.038257 B = 0.003909 C = 0.003760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.710171 B = 7161.128368 C = 7445.971536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.222 3.778 3 H 0.091 0.909 4 N -0.704 5.704 5 C 0.516 3.484 6 O -0.551 6.551 7 C 0.405 3.595 8 O -0.578 6.578 9 N -0.528 5.528 10 C -0.308 4.308 11 H 0.127 0.873 12 C 0.052 3.948 13 N -0.851 5.851 14 Si 0.876 3.124 15 H -0.265 1.265 16 H -0.271 1.271 17 H -0.259 1.259 18 C -0.242 4.242 19 C 0.061 3.939 20 N -0.295 5.295 21 N -0.378 5.378 22 C 0.103 3.897 23 C 0.067 3.933 24 H 0.064 0.936 25 H 0.058 0.942 26 H 0.062 0.938 27 H 0.410 0.590 28 H 0.384 0.616 29 H 0.281 0.719 30 H 0.185 0.815 31 H 0.074 0.926 32 H 0.086 0.914 33 H 0.088 0.912 34 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.916 3.920 21.413 22.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.116 3.884 3 H 0.109 0.891 4 N -0.357 5.357 5 C 0.301 3.699 6 O -0.429 6.429 7 C 0.190 3.810 8 O -0.464 6.464 9 N -0.165 5.165 10 C -0.438 4.438 11 H 0.145 0.855 12 C -0.156 4.156 13 N -0.488 5.488 14 Si 0.701 3.299 15 H -0.189 1.189 16 H -0.196 1.196 17 H -0.184 1.184 18 C -0.254 4.254 19 C -0.125 4.125 20 N -0.116 5.116 21 N -0.160 5.160 22 C -0.039 4.039 23 C -0.080 4.080 24 H 0.083 0.917 25 H 0.077 0.923 26 H 0.081 0.919 27 H 0.246 0.754 28 H 0.218 0.782 29 H 0.092 0.908 30 H 0.202 0.798 31 H 0.093 0.907 32 H 0.105 0.895 33 H 0.107 0.893 34 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -3.448 3.123 22.192 22.675 hybrid contribution -0.374 1.568 -0.746 1.776 sum -3.822 4.692 21.446 22.284 Atomic orbital electron populations 1.22158 0.94698 1.02370 1.02220 1.19002 0.93446 0.95861 0.80105 0.89070 1.45741 1.66697 1.14843 1.08439 1.20597 0.77682 0.86632 0.85025 1.90665 1.50619 1.16121 1.85502 1.18874 0.90053 0.87934 0.84167 1.90624 1.56060 1.15281 1.84439 1.41818 1.54096 1.11900 1.08707 1.19560 1.40112 0.98808 0.85328 0.85525 1.25228 0.96304 0.99158 0.94910 1.69442 1.41182 1.37400 1.00797 0.86677 0.80066 0.84068 0.79133 1.18948 1.19599 1.18382 1.20133 1.13878 0.93715 0.97674 1.23771 0.98228 0.95933 0.94613 1.77388 1.22078 1.03177 1.08990 1.48477 1.49864 1.03991 1.13716 1.21846 0.99458 1.03577 0.78996 1.22252 0.99537 0.95496 0.90709 0.91712 0.92289 0.91949 0.75409 0.78168 0.90829 0.79823 0.90713 0.89499 0.89331 0.80707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.86 9.47 37.16 0.35 -1.50 16 2 C 0.22 2.92 3.00 -69.08 -0.21 2.71 16 3 H 0.09 1.25 7.57 -51.93 -0.39 0.85 16 4 N -0.70 -11.50 5.05 -55.56 -0.28 -11.79 16 5 C 0.52 10.56 7.83 -11.87 -0.09 10.47 16 6 O -0.55 -11.84 16.13 5.42 0.09 -11.75 16 7 C 0.41 9.85 7.82 -11.87 -0.09 9.75 16 8 O -0.58 -15.32 16.03 5.36 0.09 -15.23 16 9 N -0.53 -13.39 5.06 -11.59 -0.06 -13.45 16 10 C -0.31 -8.66 10.16 -15.15 -0.15 -8.82 16 11 H 0.13 3.96 7.36 -52.49 -0.39 3.57 16 12 C 0.05 1.40 5.51 -17.40 -0.10 1.30 16 13 N -0.85 -23.82 13.94 55.53 0.77 -23.04 16 14 Si 0.88 19.41 27.74 -169.99 -4.72 14.69 16 15 H -0.26 -5.74 7.11 56.52 0.40 -5.34 16 16 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 17 H -0.26 -5.55 6.53 56.52 0.37 -5.18 16 18 C -0.24 -2.85 5.09 -105.05 -0.53 -3.39 16 19 C 0.06 0.75 11.20 -17.37 -0.19 0.56 16 20 N -0.30 -3.81 12.58 30.62 0.39 -3.42 16 21 N -0.38 -3.86 4.01 -68.16 -0.27 -4.14 16 22 C 0.10 0.58 11.47 59.85 0.69 1.26 16 23 C 0.07 0.66 11.40 -17.23 -0.20 0.46 16 24 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 25 H 0.06 0.67 8.14 -51.92 -0.42 0.25 16 26 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.41 6.48 7.09 -40.82 -0.29 6.19 16 28 H 0.38 9.12 5.22 -40.82 -0.21 8.91 16 29 H 0.28 7.18 8.30 -40.82 -0.34 6.84 16 30 H 0.18 1.98 7.72 -52.49 -0.41 1.57 16 31 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 33 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 34 H 0.18 1.13 8.06 -52.49 -0.42 0.71 16 LS Contribution 304.40 15.07 4.59 4.59 Total: -1.00 -33.61 304.40 -3.75 -37.36 By element: Atomic # 1 Polarization: 17.18 SS G_CDS: -3.81 Total: 13.37 kcal Atomic # 6 Polarization: 13.34 SS G_CDS: -0.53 Total: 12.81 kcal Atomic # 7 Polarization: -56.38 SS G_CDS: 0.55 Total: -55.83 kcal Atomic # 8 Polarization: -27.16 SS G_CDS: 0.17 Total: -26.99 kcal Atomic # 14 Polarization: 19.41 SS G_CDS: -4.72 Total: 14.69 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -33.61 -3.75 -37.36 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000302611530.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.937 kcal (2) G-P(sol) polarization free energy of solvation -33.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.360 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds