Wall clock time and date at job start Mon Mar 30 2020 05:29:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.46971 * 2 1 4 4 N 1.46498 * 109.47145 * 239.99317 * 2 1 3 5 5 C 1.34775 * 119.99703 * 85.00365 * 4 2 1 6 6 O 1.21438 * 120.00163 * 359.97438 * 5 4 2 7 7 C 1.48836 * 119.99826 * 179.97438 * 5 4 2 8 8 O 1.21503 * 120.00069 * 0.02562 * 7 5 4 9 9 N 1.34775 * 119.99826 * 179.97438 * 7 5 4 10 10 C 1.36118 * 120.00031 * 180.02562 * 9 7 5 11 11 H 1.08000 * 119.99759 * 359.97438 * 10 9 7 12 12 C 1.39588 * 120.00494 * 179.97438 * 10 9 7 13 13 N 1.31008 * 120.00238 * 179.97438 * 12 10 9 14 14 Si 1.86801 * 119.99445 * 359.97438 * 12 10 9 15 15 H 1.48503 * 109.47405 * 90.00195 * 14 12 10 16 16 H 1.48508 * 109.46774 * 209.99939 * 14 12 10 17 17 H 1.48503 * 109.47230 * 329.99558 * 14 12 10 18 18 C 1.50706 * 109.46912 * 119.99294 * 2 1 3 19 19 C 1.39870 * 126.03571 * 80.02569 * 18 2 1 20 20 N 1.30836 * 108.20019 * 179.71573 * 19 18 2 21 21 N 1.40090 * 108.20534 * 0.24683 * 20 19 18 22 22 C 1.46502 * 126.03499 * 179.97438 * 21 20 19 23 23 C 1.34942 * 107.92509 * 359.97438 * 21 20 19 24 24 H 1.09000 * 109.46911 * 60.00623 * 1 2 3 25 25 H 1.09008 * 109.47173 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47080 * 300.00612 * 1 2 3 27 27 H 0.97000 * 120.00164 * 264.99872 * 4 2 1 28 28 H 0.97000 * 120.00133 * 359.97438 * 9 7 5 29 29 H 0.97002 * 119.99886 * 179.97438 * 13 12 10 30 30 H 1.08002 * 125.90382 * 359.97438 * 19 18 2 31 31 H 1.09002 * 109.47159 * 89.97587 * 22 21 20 32 32 H 1.08999 * 109.46542 * 209.97099 * 22 21 20 33 33 H 1.08999 * 109.47324 * 329.96897 * 22 21 20 34 34 H 1.08002 * 126.12737 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6907 -1.1961 5 6 2.1471 -0.0185 -2.3571 6 8 1.8579 1.1597 -2.4118 7 6 2.6438 -0.7201 -3.5721 8 8 2.9327 -1.8990 -3.5174 9 7 2.7720 -0.0479 -4.7332 10 6 3.2258 -0.6896 -5.8446 11 1 3.4834 -1.7373 -5.7958 12 6 3.3581 0.0063 -7.0473 13 7 3.7953 -0.6113 -8.1168 14 14 2.9119 1.8183 -7.1318 15 1 4.1083 2.6382 -6.8130 16 1 2.4363 2.1476 -8.4996 17 1 1.8363 2.1095 -6.1502 18 6 2.0323 -0.7103 1.2306 19 6 2.1218 -2.0955 1.4022 20 7 2.6081 -2.3291 2.5942 21 7 2.8384 -1.0980 3.2218 22 6 3.3791 -0.9056 4.5698 23 6 2.4743 -0.1207 2.3655 24 1 -0.3633 0.5137 -0.8901 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 2.2491 -1.6319 -1.1524 28 1 2.5403 0.8930 -4.7771 29 1 3.8869 -0.1277 -8.9527 30 1 1.8422 -2.8432 0.6747 31 1 4.4660 -0.8405 4.5194 32 1 2.9791 0.0155 4.9935 33 1 3.0943 -1.7487 5.1992 34 1 2.5297 0.9418 2.5512 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000302611530.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:29:50 Heat of formation + Delta-G solvation = -13.992572 kcal Electronic energy + Delta-G solvation = -19499.518479 eV Core-core repulsion = 16240.553260 eV Total energy + Delta-G solvation = -3258.965219 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 1.60 seconds Orbital eigenvalues (eV) -42.29673 -41.29785 -39.29461 -36.97645 -36.15810 -34.04874 -33.82395 -32.31040 -30.09675 -27.98212 -27.50395 -25.20761 -23.44584 -22.23998 -21.28801 -20.95603 -20.66580 -18.90806 -17.76764 -17.61564 -16.83210 -16.59538 -16.35628 -16.01722 -15.40030 -15.26043 -14.95860 -14.80730 -14.60951 -14.39139 -13.90389 -13.74298 -13.39051 -13.32248 -13.06390 -12.85539 -12.53646 -12.44015 -12.40408 -11.95755 -11.68730 -11.48057 -10.45563 -10.40817 -10.32878 -10.23090 -9.40502 -8.60355 -6.14488 0.56668 0.90147 1.30754 1.35485 1.41252 1.56803 1.69612 1.95832 2.12577 2.33124 3.09221 3.13349 3.53979 3.85128 3.97413 4.15588 4.27821 4.34451 4.42233 4.46819 4.72328 4.77211 4.79184 4.94909 5.05143 5.28911 5.31645 5.45053 5.59183 5.76350 6.09718 6.15406 6.41667 6.61752 6.67717 6.96357 7.18097 7.65572 8.54354 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.038257 B = 0.003909 C = 0.003760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.710171 B = 7161.128368 C = 7445.971536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.224 3.776 3 H 0.093 0.907 4 N -0.686 5.686 5 C 0.527 3.473 6 O -0.557 6.557 7 C 0.406 3.594 8 O -0.604 6.604 9 N -0.532 5.532 10 C -0.340 4.340 11 H 0.076 0.924 12 C 0.010 3.990 13 N -0.894 5.894 14 Si 0.950 3.050 15 H -0.252 1.252 16 H -0.258 1.258 17 H -0.246 1.246 18 C -0.263 4.263 19 C 0.048 3.952 20 N -0.330 5.330 21 N -0.377 5.377 22 C 0.092 3.908 23 C 0.083 3.917 24 H 0.046 0.954 25 H 0.059 0.941 26 H 0.088 0.912 27 H 0.412 0.588 28 H 0.393 0.607 29 H 0.290 0.710 30 H 0.186 0.814 31 H 0.083 0.917 32 H 0.120 0.880 33 H 0.090 0.910 34 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.601 6.567 23.737 25.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.120 3.880 3 H 0.111 0.889 4 N -0.338 5.338 5 C 0.309 3.691 6 O -0.436 6.436 7 C 0.191 3.809 8 O -0.492 6.492 9 N -0.171 5.171 10 C -0.469 4.469 11 H 0.094 0.906 12 C -0.195 4.195 13 N -0.532 5.532 14 Si 0.769 3.231 15 H -0.176 1.176 16 H -0.182 1.182 17 H -0.170 1.170 18 C -0.275 4.275 19 C -0.137 4.137 20 N -0.152 5.152 21 N -0.159 5.159 22 C -0.047 4.047 23 C -0.066 4.066 24 H 0.065 0.935 25 H 0.079 0.921 26 H 0.107 0.893 27 H 0.249 0.751 28 H 0.230 0.770 29 H 0.100 0.900 30 H 0.203 0.797 31 H 0.102 0.898 32 H 0.138 0.862 33 H 0.109 0.891 34 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -4.131 5.738 24.559 25.556 hybrid contribution -0.130 0.622 -1.261 1.412 sum -4.261 6.361 23.298 24.524 Atomic orbital electron populations 1.22117 0.93523 1.02638 1.02618 1.19183 0.94261 0.95590 0.78989 0.88883 1.45813 1.64835 1.14921 1.08239 1.19766 0.78211 0.86334 0.84810 1.90665 1.51336 1.16050 1.85575 1.19757 0.88222 0.87768 0.85194 1.90604 1.56509 1.16796 1.85249 1.41680 1.54782 1.12257 1.08356 1.19167 1.43016 0.97312 0.87417 0.90575 1.26102 0.95259 1.04475 0.93671 1.69553 1.42040 1.39894 1.01698 0.85572 0.80489 0.76998 0.80048 1.17584 1.18175 1.16972 1.20014 1.16068 0.93466 0.97979 1.23916 0.98448 0.96564 0.94795 1.77332 1.23266 1.05141 1.09496 1.48860 1.48868 1.03240 1.14902 1.22234 1.00133 1.05352 0.77027 1.22803 0.97123 0.96994 0.89634 0.93473 0.92145 0.89288 0.75134 0.77032 0.89969 0.79665 0.89820 0.86172 0.89141 0.76954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.24 9.47 71.98 0.68 -2.56 16 2 C 0.22 5.40 3.00 44.25 0.13 5.54 16 3 H 0.09 2.27 7.57 -2.39 -0.02 2.25 16 4 N -0.69 -21.68 5.05 -448.02 -2.26 -23.94 16 5 C 0.53 21.07 7.83 87.08 0.68 21.75 16 6 O -0.56 -22.93 16.13 -3.52 -0.06 -22.98 16 7 C 0.41 19.98 7.82 87.08 0.68 20.66 16 8 O -0.60 -33.06 16.03 -3.72 -0.06 -33.12 16 9 N -0.53 -27.31 5.06 -308.87 -1.56 -28.88 16 10 C -0.34 -19.84 10.16 84.35 0.86 -18.98 16 11 H 0.08 5.11 7.36 -2.91 -0.02 5.09 16 12 C 0.01 0.53 5.51 85.14 0.47 0.99 16 13 N -0.89 -51.34 13.94 21.77 0.30 -51.04 16 14 Si 0.95 39.42 27.74 68.60 1.90 41.33 16 15 H -0.25 -9.94 7.11 99.48 0.71 -9.23 16 16 H -0.26 -10.11 7.11 99.48 0.71 -9.40 16 17 H -0.25 -9.60 6.53 99.48 0.65 -8.95 16 18 C -0.26 -5.62 5.09 -20.14 -0.10 -5.72 16 19 C 0.05 1.15 11.20 85.24 0.95 2.10 16 20 N -0.33 -8.12 12.58 -57.02 -0.72 -8.84 16 21 N -0.38 -6.68 4.01 -369.56 -1.48 -8.17 16 22 C 0.09 0.75 11.47 127.77 1.47 2.21 16 23 C 0.08 1.34 11.40 83.54 0.95 2.29 16 24 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 25 H 0.06 1.28 8.14 -2.38 -0.02 1.26 16 26 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 27 H 0.41 12.85 7.09 -92.71 -0.66 12.20 16 28 H 0.39 18.37 5.22 -92.71 -0.48 17.89 16 29 H 0.29 14.99 8.30 -92.71 -0.77 14.22 16 30 H 0.19 4.00 7.72 -2.91 -0.02 3.98 16 31 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 32 H 0.12 0.19 8.14 -2.39 -0.02 0.17 16 33 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 34 H 0.21 1.67 8.06 -2.91 -0.02 1.64 16 Total: -1.00 -75.20 304.40 2.79 -72.41 By element: Atomic # 1 Polarization: 35.00 SS G_CDS: -0.05 Total: 34.95 kcal Atomic # 6 Polarization: 21.51 SS G_CDS: 6.77 Total: 28.28 kcal Atomic # 7 Polarization: -115.14 SS G_CDS: -5.72 Total: -120.86 kcal Atomic # 8 Polarization: -55.99 SS G_CDS: -0.12 Total: -56.11 kcal Atomic # 14 Polarization: 39.42 SS G_CDS: 1.90 Total: 41.33 kcal Total: -75.20 2.79 -72.41 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000302611530.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.422 kcal (2) G-P(sol) polarization free energy of solvation -75.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.60 seconds