Wall clock time and date at job start Mon Mar 30 2020 04:24:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.37844 * 125.89275 * 2 1 4 4 C 1.47104 * 127.02578 * 359.97438 * 3 2 1 5 5 O 1.21550 * 120.00146 * 0.23977 * 4 3 2 6 6 O 1.34793 * 120.00087 * 180.23536 * 4 3 2 7 7 C 1.46743 * 105.94805 * 180.21052 * 3 2 1 8 8 C 1.34432 * 106.37483 * 359.78480 * 7 3 2 9 9 N 1.34628 * 125.89801 * 179.83526 * 2 1 3 10 10 C 1.46499 * 124.80816 * 0.03407 * 9 2 1 11 11 C 1.50701 * 109.46992 * 84.72324 * 10 9 2 12 12 O 1.21280 * 119.99781 * 0.02562 * 11 10 9 13 13 N 1.34780 * 119.99795 * 179.97438 * 11 10 9 14 14 C 1.46497 * 119.99566 * 180.02562 * 13 11 10 15 15 C 1.50703 * 109.46835 * 180.02562 * 14 13 11 16 16 H 1.07995 * 120.00280 * 0.02562 * 15 14 13 17 17 C 1.37880 * 119.99788 * 180.02562 * 15 14 13 18 18 N 1.31511 * 120.00327 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99743 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.47061 * 60.00295 * 19 17 15 21 21 H 1.48505 * 109.46988 * 179.97438 * 19 17 15 22 22 H 1.48494 * 109.47116 * 300.00069 * 19 17 15 23 23 H 1.08991 * 109.47037 * 270.16388 * 1 2 3 24 24 H 1.08995 * 109.47111 * 30.17011 * 1 2 3 25 25 H 1.09000 * 109.46699 * 150.16350 * 1 2 3 26 26 H 0.96700 * 116.99894 * 180.02562 * 6 4 3 27 27 H 1.08001 * 126.81235 * 179.75725 * 7 3 2 28 28 H 1.08002 * 125.45455 * 179.97438 * 8 7 3 29 29 H 1.09002 * 109.47391 * 324.72314 * 10 9 2 30 30 H 1.09001 * 109.46813 * 204.72370 * 10 9 2 31 31 H 0.96995 * 120.00011 * 0.02562 * 13 11 10 32 32 H 1.09001 * 109.47487 * 300.00114 * 14 13 11 33 33 H 1.09002 * 109.47182 * 60.00342 * 14 13 11 34 34 H 0.97000 * 120.00354 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3152 1.1167 0.0000 4 6 1.8831 2.5228 -0.0005 5 8 0.6984 2.7946 0.0034 6 8 2.8010 3.5100 -0.0052 7 6 3.6946 0.6161 -0.0052 8 6 3.6109 -0.7256 -0.0030 9 7 2.2964 -1.0906 0.0031 10 6 1.8124 -2.4733 0.0064 11 6 1.5238 -2.9078 -1.4075 12 8 1.7051 -2.1383 -2.3272 13 7 1.0652 -4.1518 -1.6498 14 6 0.7852 -4.5743 -3.0243 15 6 0.2871 -5.9966 -3.0210 16 1 0.1886 -6.5321 -2.0883 17 6 -0.0428 -6.6143 -4.2087 18 7 0.0776 -5.9624 -5.3445 19 14 -0.6595 -8.3776 -4.2046 20 1 -1.9028 -8.4653 -3.3972 21 1 -0.9435 -8.8059 -5.5979 22 1 0.3768 -9.2630 -3.6155 23 1 -0.3633 0.0029 1.0276 24 1 -0.3633 0.8884 -0.5164 25 1 -0.3633 -0.8915 -0.5113 26 1 2.4689 4.4182 -0.0050 27 1 4.5979 1.2082 -0.0103 28 1 4.4500 -1.4056 -0.0060 29 1 0.9002 -2.5376 0.5996 30 1 2.5732 -3.1235 0.4382 31 1 0.9206 -4.7672 -0.9142 32 1 0.0243 -3.9243 -3.4564 33 1 1.6975 -4.5098 -3.6173 34 1 -0.1548 -6.3968 -6.1801 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000304130468.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:24:57 Heat of formation + Delta-G solvation = -86.533939 kcal Electronic energy + Delta-G solvation = -19467.594221 eV Core-core repulsion = 16173.190621 eV Total energy + Delta-G solvation = -3294.403600 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.48239 -39.59575 -38.69077 -35.88284 -34.40693 -32.96641 -32.39064 -31.60145 -28.47965 -26.82634 -26.27650 -23.45831 -22.52781 -20.77901 -20.14776 -18.86361 -17.89574 -17.52386 -17.03087 -16.04116 -15.74013 -15.42633 -15.17336 -14.79038 -14.44740 -13.94406 -13.83617 -13.25291 -12.98621 -12.80108 -12.69069 -12.51141 -12.32574 -12.06695 -11.69916 -11.54843 -11.42028 -11.09982 -10.95213 -10.42544 -10.39051 -9.57079 -9.52333 -8.85894 -8.58803 -8.14204 -8.10112 -6.26018 -4.34505 1.54295 2.34982 2.64523 2.98487 3.18811 3.24076 3.25436 3.38855 3.44825 3.85041 4.26663 4.68698 4.69102 4.93827 4.95427 5.10189 5.15053 5.21691 5.53596 5.58588 5.64166 5.94368 6.03337 6.20052 6.61085 6.75458 7.06666 7.08885 7.15593 7.22334 7.36457 7.51417 7.84385 8.12461 8.37277 8.60353 8.84075 9.32287 10.83928 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.041664 B = 0.003532 C = 0.003464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 671.884009 B = 7925.448658 C = 8081.783271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.141 3.859 3 C -0.242 4.242 4 C 0.561 3.439 5 O -0.534 6.534 6 O -0.515 6.515 7 C -0.145 4.145 8 C -0.012 4.012 9 N -0.416 5.416 10 C 0.075 3.925 11 C 0.478 3.522 12 O -0.533 6.533 13 N -0.705 5.705 14 C 0.251 3.749 15 C -0.548 4.548 16 H 0.063 0.937 17 C 0.065 3.935 18 N -0.884 5.884 19 Si 0.905 3.095 20 H -0.275 1.275 21 H -0.285 1.285 22 H -0.275 1.275 23 H 0.079 0.921 24 H 0.100 0.900 25 H 0.070 0.930 26 H 0.407 0.593 27 H 0.150 0.850 28 H 0.168 0.832 29 H 0.117 0.883 30 H 0.122 0.878 31 H 0.392 0.608 32 H 0.029 0.971 33 H 0.028 0.972 34 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.959 9.839 14.301 18.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.022 3.978 3 C -0.250 4.250 4 C 0.408 3.592 5 O -0.426 6.426 6 O -0.326 6.326 7 C -0.168 4.168 8 C -0.137 4.137 9 N -0.090 5.090 10 C -0.051 4.051 11 C 0.260 3.740 12 O -0.411 6.411 13 N -0.355 5.355 14 C 0.130 3.870 15 C -0.586 4.586 16 H 0.082 0.918 17 C -0.139 4.139 18 N -0.521 5.521 19 Si 0.732 3.268 20 H -0.200 1.200 21 H -0.210 1.210 22 H -0.200 1.200 23 H 0.098 0.902 24 H 0.118 0.882 25 H 0.089 0.911 26 H 0.264 0.736 27 H 0.167 0.833 28 H 0.186 0.814 29 H 0.135 0.865 30 H 0.140 0.860 31 H 0.225 0.775 32 H 0.047 0.953 33 H 0.046 0.954 34 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 4.831 9.668 13.390 17.208 hybrid contribution -0.487 -0.794 0.132 0.941 sum 4.344 8.875 13.523 16.748 Atomic orbital electron populations 1.20625 0.86977 1.04916 1.03147 1.20501 0.93645 0.84835 0.98806 1.19130 0.93927 0.88298 1.23619 1.19804 0.82722 0.85311 0.71340 1.90840 1.18442 1.84619 1.48715 1.84597 1.42354 1.19265 1.86396 1.21928 0.95610 0.93004 1.06304 1.21701 0.85214 0.96290 1.10457 1.43139 1.06189 1.04959 1.54741 1.21931 1.03582 0.81552 0.98013 1.20535 0.79713 0.83631 0.90149 1.90768 1.52354 1.52733 1.45222 1.46451 1.64069 1.12227 1.12716 1.19163 0.96841 0.94916 0.76037 1.21148 1.46521 0.97367 0.93606 0.91843 1.24957 0.95126 0.98693 0.95159 1.69956 1.46687 1.37417 0.98006 0.86449 0.79298 0.83679 0.77342 1.20001 1.20997 1.20017 0.90244 0.88180 0.91127 0.73605 0.83251 0.81448 0.86480 0.86010 0.77470 0.95347 0.95366 0.92235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.34 9.33 36.01 0.34 -1.01 16 2 C 0.14 2.11 6.88 -81.51 -0.56 1.55 16 3 C -0.24 -3.66 6.33 -103.01 -0.65 -4.32 16 4 C 0.56 8.18 8.32 34.33 0.29 8.46 16 5 O -0.53 -8.76 15.67 -19.30 -0.30 -9.06 16 6 O -0.52 -5.77 13.33 -40.74 -0.54 -6.31 16 7 C -0.15 -1.94 11.00 -37.49 -0.41 -2.35 16 8 C -0.01 -0.15 11.30 -16.85 -0.19 -0.34 16 9 N -0.42 -5.74 2.19 -113.52 -0.25 -5.99 16 10 C 0.07 0.89 5.97 -5.19 -0.03 0.86 16 11 C 0.48 8.53 7.90 -10.98 -0.09 8.44 16 12 O -0.53 -12.28 16.39 5.56 0.09 -12.19 16 13 N -0.71 -13.31 5.55 -61.47 -0.34 -13.65 16 14 C 0.25 6.31 5.43 -5.19 -0.03 6.28 16 15 C -0.55 -14.20 9.28 -34.44 -0.32 -14.52 16 16 H 0.06 1.51 7.60 -52.49 -0.40 1.11 16 17 C 0.07 1.75 5.46 -17.82 -0.10 1.65 16 18 N -0.88 -25.43 13.29 55.43 0.74 -24.69 16 19 Si 0.91 20.18 29.54 -169.99 -5.02 15.16 16 20 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 21 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 22 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 23 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 24 H 0.10 1.48 6.53 -51.93 -0.34 1.14 16 25 H 0.07 0.96 7.69 -51.93 -0.40 0.56 16 26 H 0.41 2.54 9.11 45.56 0.42 2.96 16 27 H 0.15 1.67 8.06 -52.49 -0.42 1.24 16 28 H 0.17 1.65 8.06 -52.49 -0.42 1.23 16 29 H 0.12 1.07 7.76 -51.93 -0.40 0.66 16 30 H 0.12 1.03 8.11 -51.93 -0.42 0.61 16 31 H 0.39 6.00 8.32 -40.82 -0.34 5.66 16 32 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 34 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 308.43 15.07 4.65 4.65 Total: -1.00 -35.32 308.43 -5.87 -41.19 By element: Atomic # 1 Polarization: 9.33 SS G_CDS: -3.13 Total: 6.20 kcal Atomic # 6 Polarization: 6.47 SS G_CDS: -1.76 Total: 4.71 kcal Atomic # 7 Polarization: -44.48 SS G_CDS: 0.15 Total: -44.33 kcal Atomic # 8 Polarization: -26.81 SS G_CDS: -0.75 Total: -27.57 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -5.02 Total: 15.16 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -35.32 -5.87 -41.19 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000304130468.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.347 kcal (2) G-P(sol) polarization free energy of solvation -35.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds