Wall clock time and date at job start Mon Mar 30 2020 04:28:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30539 * 119.70101 * 2 1 4 4 N 1.28263 * 123.00249 * 180.30352 * 3 2 1 5 5 C 1.46498 * 119.03075 * 179.74508 * 4 3 2 6 6 C 1.52995 * 109.47365 * 269.73022 * 5 4 3 7 7 C 1.50696 * 109.47338 * 179.97438 * 6 5 4 8 8 H 1.07999 * 120.00023 * 0.02562 * 7 6 5 9 9 C 1.37880 * 119.99835 * 179.97438 * 7 6 5 10 10 N 1.31516 * 120.00260 * 0.02562 * 9 7 6 11 11 Si 1.86798 * 119.99724 * 180.02562 * 9 7 6 12 12 H 1.48499 * 109.47235 * 60.00682 * 11 9 7 13 13 H 1.48507 * 109.47246 * 180.02562 * 11 9 7 14 14 H 1.48500 * 109.47428 * 300.00432 * 11 9 7 15 15 C 1.34687 * 121.94100 * 359.46334 * 4 3 2 16 16 O 1.21898 * 120.46911 * 180.23676 * 15 4 3 17 17 C 1.42374 * 119.05519 * 0.25962 * 15 4 3 18 18 C 1.47261 * 121.30162 * 180.02562 * 17 15 4 19 19 O 1.21528 * 119.99880 * 174.02657 * 18 17 15 20 20 O 1.34781 * 120.00513 * 354.02458 * 18 17 15 21 21 C 1.39387 * 117.38870 * 0.02562 * 17 15 4 22 22 C 1.50702 * 120.99224 * 179.97438 * 21 17 15 23 23 H 1.09003 * 109.46798 * 270.22514 * 1 2 3 24 24 H 1.09000 * 109.47476 * 30.22131 * 1 2 3 25 25 H 1.08999 * 109.47280 * 150.22605 * 1 2 3 26 26 H 1.09001 * 109.47467 * 149.72312 * 5 4 3 27 27 H 1.09003 * 109.46977 * 29.72728 * 5 4 3 28 28 H 1.09001 * 109.47408 * 59.99254 * 6 5 4 29 29 H 1.09003 * 109.46834 * 299.99794 * 6 5 4 30 30 H 0.97003 * 120.00086 * 179.97438 * 10 9 7 31 31 H 0.96699 * 117.00368 * 179.97438 * 20 18 17 32 32 H 1.08996 * 109.47207 * 84.55734 * 22 21 17 33 33 H 1.09007 * 109.47032 * 204.55362 * 22 21 17 34 34 H 1.09000 * 109.46932 * 324.55524 * 22 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1538 1.1339 0.0000 4 7 3.4343 1.2078 -0.0057 5 6 4.0702 2.5275 -0.0109 6 6 4.2915 2.9814 -1.4551 7 6 4.9451 4.3392 -1.4604 8 1 5.1796 4.8293 -0.5270 9 6 5.2446 4.9555 -2.6569 10 7 4.9594 4.3585 -3.7935 11 14 6.0554 6.6383 -2.6634 12 1 7.3625 6.5607 -1.9629 13 1 6.2701 7.0789 -4.0653 14 1 5.1779 7.6133 -1.9674 15 6 4.2115 0.1078 -0.0015 16 8 5.4262 0.2093 -0.0027 17 6 3.5941 -1.1751 0.0040 18 6 4.3960 -2.4101 0.0094 19 8 3.8490 -3.4893 0.1235 20 8 5.7367 -2.3438 -0.1123 21 6 2.2008 -1.2162 0.0042 22 6 1.4632 -2.5303 0.0092 23 1 -0.3633 0.0040 1.0277 24 1 -0.3634 0.8880 -0.5173 25 1 -0.3634 -0.8920 -0.5103 26 1 5.0297 2.4705 0.5032 27 1 3.4262 3.2431 0.5002 28 1 3.3320 3.0384 -1.9691 29 1 4.9355 2.2658 -1.9662 30 1 5.1698 4.7922 -4.6353 31 1 6.2204 -3.1810 -0.1031 32 1 1.3703 -2.8909 1.0336 33 1 0.4702 -2.3913 -0.4184 34 1 2.0155 -3.2592 -0.5839 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000304304027.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:28:06 Heat of formation + Delta-G solvation = -68.805780 kcal Electronic energy + Delta-G solvation = -20198.364833 eV Core-core repulsion = 16904.729983 eV Total energy + Delta-G solvation = -3293.634849 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.95400 -39.88389 -37.80513 -36.28685 -35.68331 -33.48263 -32.22943 -31.14937 -28.74132 -27.84171 -25.32454 -24.84504 -22.42630 -21.73361 -20.88478 -19.10151 -17.43041 -17.21701 -16.61079 -16.18159 -15.88577 -15.29779 -15.15926 -14.51051 -13.97882 -13.88784 -13.49051 -13.24487 -13.09639 -12.93998 -12.72650 -12.54933 -12.13707 -11.92147 -11.47591 -11.40709 -11.18320 -10.98524 -10.79813 -10.41007 -10.18112 -10.13603 -9.59502 -9.52012 -9.25830 -8.45036 -8.14549 -6.09787 -4.14708 0.12904 1.73908 2.40889 2.52711 3.06879 3.30363 3.34648 3.37104 3.61033 4.07360 4.39186 4.40556 4.61375 4.75958 5.21054 5.26906 5.36173 5.43622 5.50466 5.57239 5.66403 5.78415 5.92341 6.00209 6.09741 6.15425 6.29619 6.48418 6.55241 7.48247 7.53623 7.84770 7.88463 7.98210 8.19954 8.39820 8.89584 9.49753 11.01750 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.024705 B = 0.005166 C = 0.004547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.104460 B = 5418.610545 C = 6156.109448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.010 3.990 3 N -0.166 5.166 4 N -0.318 5.318 5 C 0.108 3.892 6 C 0.016 3.984 7 C -0.524 4.524 8 H 0.061 0.939 9 C 0.061 3.939 10 N -0.891 5.891 11 Si 0.900 3.100 12 H -0.275 1.275 13 H -0.286 1.286 14 H -0.275 1.275 15 C 0.491 3.509 16 O -0.493 6.493 17 C -0.243 4.243 18 C 0.553 3.447 19 O -0.522 6.522 20 O -0.483 6.483 21 C 0.062 3.938 22 C -0.133 4.133 23 H 0.078 0.922 24 H 0.082 0.918 25 H 0.082 0.918 26 H 0.099 0.901 27 H 0.093 0.907 28 H 0.025 0.975 29 H 0.025 0.975 30 H 0.264 0.736 31 H 0.407 0.593 32 H 0.094 0.906 33 H 0.081 0.919 34 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.952 -12.616 8.220 17.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.156 4.156 3 N 0.004 4.996 4 N -0.139 5.139 5 C -0.010 4.010 6 C -0.022 4.022 7 C -0.563 4.563 8 H 0.079 0.921 9 C -0.141 4.141 10 N -0.529 5.529 11 Si 0.727 3.273 12 H -0.200 1.200 13 H -0.212 1.212 14 H -0.200 1.200 15 C 0.287 3.713 16 O -0.367 6.367 17 C -0.256 4.256 18 C 0.399 3.601 19 O -0.415 6.415 20 O -0.292 6.292 21 C 0.055 3.945 22 C -0.189 4.189 23 H 0.097 0.903 24 H 0.101 0.899 25 H 0.101 0.899 26 H 0.117 0.883 27 H 0.111 0.889 28 H 0.044 0.956 29 H 0.044 0.956 30 H 0.073 0.927 31 H 0.264 0.736 32 H 0.112 0.888 33 H 0.099 0.901 34 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -8.587 -11.495 8.052 16.453 hybrid contribution 1.094 -0.362 -0.188 1.168 sum -7.493 -11.857 7.865 16.080 Atomic orbital electron populations 1.20535 0.86042 1.04158 1.03408 1.21572 0.98109 0.86414 1.09515 1.70667 0.96332 1.28680 1.03910 1.47524 1.01261 1.11527 1.53636 1.22740 0.97416 0.76552 1.04280 1.19420 0.98085 0.97028 0.87692 1.20906 1.40724 1.01853 0.92831 0.92125 1.24992 0.95532 0.98158 0.95420 1.69962 1.47104 1.38432 0.97432 0.86531 0.79977 0.83683 0.77086 1.20030 1.21186 1.20049 1.17713 0.88524 0.84569 0.80484 1.91004 1.11540 1.85527 1.48678 1.20347 0.92836 0.92389 1.20000 1.19791 0.80927 0.87433 0.71933 1.90822 1.72467 1.30135 1.48035 1.84869 1.19383 1.40669 1.84275 1.21608 0.91895 0.97600 0.83417 1.21323 1.00252 0.92775 1.04553 0.90335 0.89875 0.89935 0.88296 0.88891 0.95633 0.95621 0.92672 0.73584 0.88777 0.90069 0.88018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.71 9.80 36.01 0.35 -0.36 16 2 C 0.01 0.13 6.87 -82.48 -0.57 -0.44 16 3 N -0.17 -2.81 10.76 33.65 0.36 -2.44 16 4 N -0.32 -6.22 3.22 -62.99 -0.20 -6.43 16 5 C 0.11 2.28 5.49 -4.05 -0.02 2.26 16 6 C 0.02 0.41 5.29 -27.89 -0.15 0.26 16 7 C -0.52 -14.60 9.11 -34.44 -0.31 -14.91 16 8 H 0.06 1.59 7.74 -52.49 -0.41 1.19 16 9 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 10 N -0.89 -26.75 13.29 55.43 0.74 -26.01 16 11 Si 0.90 21.41 29.54 -169.99 -5.02 16.39 16 12 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 13 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 14 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 15 C 0.49 9.91 7.50 -14.71 -0.11 9.80 16 16 O -0.49 -11.43 14.93 -15.62 -0.23 -11.66 16 17 C -0.24 -4.08 5.95 -104.21 -0.62 -4.70 16 18 C 0.55 8.71 8.22 34.40 0.28 9.00 16 19 O -0.52 -7.93 14.38 -19.29 -0.28 -8.20 16 20 O -0.48 -7.23 11.79 -47.67 -0.56 -7.79 16 21 C 0.06 0.84 5.99 -103.53 -0.62 0.22 16 22 C -0.13 -1.29 8.61 36.01 0.31 -0.98 16 23 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 24 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 25 H 0.08 0.51 5.99 -51.93 -0.31 0.20 16 26 H 0.10 2.11 7.36 -51.93 -0.38 1.73 16 27 H 0.09 1.78 8.13 -51.93 -0.42 1.35 16 28 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 30 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 31 H 0.41 3.61 9.11 45.56 0.42 4.03 16 32 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 33 H 0.08 0.55 5.89 -51.93 -0.31 0.25 16 34 H 0.10 1.14 5.96 -51.93 -0.31 0.83 16 LS Contribution 296.73 15.07 4.47 4.47 Total: -1.00 -34.87 296.73 -5.25 -40.12 By element: Atomic # 1 Polarization: 2.73 SS G_CDS: -2.97 Total: -0.24 kcal Atomic # 6 Polarization: 3.34 SS G_CDS: -1.55 Total: 1.79 kcal Atomic # 7 Polarization: -35.78 SS G_CDS: 0.90 Total: -34.88 kcal Atomic # 8 Polarization: -26.58 SS G_CDS: -1.07 Total: -27.66 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -34.87 -5.25 -40.12 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000304304027.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.685 kcal (2) G-P(sol) polarization free energy of solvation -34.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds