Wall clock time and date at job start Mon Mar 30 2020 04:28:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30539 * 119.70101 * 2 1 4 4 N 1.28263 * 123.00249 * 180.30352 * 3 2 1 5 5 C 1.46498 * 119.03075 * 179.74508 * 4 3 2 6 6 C 1.52995 * 109.47365 * 269.73022 * 5 4 3 7 7 C 1.50696 * 109.47338 * 179.97438 * 6 5 4 8 8 H 1.07999 * 120.00023 * 0.02562 * 7 6 5 9 9 C 1.37880 * 119.99835 * 179.97438 * 7 6 5 10 10 N 1.31516 * 120.00260 * 0.02562 * 9 7 6 11 11 Si 1.86798 * 119.99724 * 180.02562 * 9 7 6 12 12 H 1.48499 * 109.47235 * 60.00682 * 11 9 7 13 13 H 1.48507 * 109.47246 * 180.02562 * 11 9 7 14 14 H 1.48500 * 109.47428 * 300.00432 * 11 9 7 15 15 C 1.34687 * 121.94100 * 359.46334 * 4 3 2 16 16 O 1.21898 * 120.46911 * 180.23676 * 15 4 3 17 17 C 1.42374 * 119.05519 * 0.25962 * 15 4 3 18 18 C 1.47261 * 121.30162 * 180.02562 * 17 15 4 19 19 O 1.21528 * 119.99880 * 174.02657 * 18 17 15 20 20 O 1.34781 * 120.00513 * 354.02458 * 18 17 15 21 21 C 1.39387 * 117.38870 * 0.02562 * 17 15 4 22 22 C 1.50702 * 120.99224 * 179.97438 * 21 17 15 23 23 H 1.09003 * 109.46798 * 270.22514 * 1 2 3 24 24 H 1.09000 * 109.47476 * 30.22131 * 1 2 3 25 25 H 1.08999 * 109.47280 * 150.22605 * 1 2 3 26 26 H 1.09001 * 109.47467 * 149.72312 * 5 4 3 27 27 H 1.09003 * 109.46977 * 29.72728 * 5 4 3 28 28 H 1.09001 * 109.47408 * 59.99254 * 6 5 4 29 29 H 1.09003 * 109.46834 * 299.99794 * 6 5 4 30 30 H 0.97003 * 120.00086 * 179.97438 * 10 9 7 31 31 H 0.96699 * 117.00368 * 179.97438 * 20 18 17 32 32 H 1.08996 * 109.47207 * 84.55734 * 22 21 17 33 33 H 1.09007 * 109.47032 * 204.55362 * 22 21 17 34 34 H 1.09000 * 109.46932 * 324.55524 * 22 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1538 1.1339 0.0000 4 7 3.4343 1.2078 -0.0057 5 6 4.0702 2.5275 -0.0109 6 6 4.2915 2.9814 -1.4551 7 6 4.9451 4.3392 -1.4604 8 1 5.1796 4.8293 -0.5270 9 6 5.2446 4.9555 -2.6569 10 7 4.9594 4.3585 -3.7935 11 14 6.0554 6.6383 -2.6634 12 1 7.3625 6.5607 -1.9629 13 1 6.2701 7.0789 -4.0653 14 1 5.1779 7.6133 -1.9674 15 6 4.2115 0.1078 -0.0015 16 8 5.4262 0.2093 -0.0027 17 6 3.5941 -1.1751 0.0040 18 6 4.3960 -2.4101 0.0094 19 8 3.8490 -3.4893 0.1235 20 8 5.7367 -2.3438 -0.1123 21 6 2.2008 -1.2162 0.0042 22 6 1.4632 -2.5303 0.0092 23 1 -0.3633 0.0040 1.0277 24 1 -0.3634 0.8880 -0.5173 25 1 -0.3634 -0.8920 -0.5103 26 1 5.0297 2.4705 0.5032 27 1 3.4262 3.2431 0.5002 28 1 3.3320 3.0384 -1.9691 29 1 4.9355 2.2658 -1.9662 30 1 5.1698 4.7922 -4.6353 31 1 6.2204 -3.1810 -0.1031 32 1 1.3703 -2.8909 1.0336 33 1 0.4702 -2.3913 -0.4184 34 1 2.0155 -3.2592 -0.5839 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000304304027.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:28:05 Heat of formation + Delta-G solvation = -93.935252 kcal Electronic energy + Delta-G solvation = -20199.454528 eV Core-core repulsion = 16904.729983 eV Total energy + Delta-G solvation = -3294.724545 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -43.28513 -41.08605 -39.21787 -37.56997 -36.96161 -35.43088 -33.55033 -32.76574 -30.13983 -28.95303 -26.98738 -26.15366 -24.00932 -23.05697 -22.40212 -20.41075 -19.00051 -18.58260 -18.11252 -17.69044 -17.30091 -16.65898 -16.62886 -16.33364 -15.15390 -15.01071 -14.94410 -14.48175 -14.37467 -14.18978 -14.04162 -13.80130 -13.61215 -13.20129 -12.86508 -12.69259 -12.56682 -12.55630 -12.44675 -12.10729 -11.89607 -11.57469 -11.46726 -10.99273 -10.79614 -10.63486 -9.59405 -8.27447 -6.41302 -1.08911 0.46501 1.07876 1.22381 1.40738 1.44745 1.52508 1.96304 2.27675 2.38903 2.85923 3.07169 3.32168 3.52984 3.73496 4.12467 4.22052 4.33719 4.39094 4.47523 4.61401 4.64447 4.77785 4.81325 4.94243 5.10817 5.14593 5.30618 5.38162 5.40851 5.56289 5.68232 6.03177 6.44674 6.72664 6.92553 7.08083 7.28912 8.85332 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.024705 B = 0.005166 C = 0.004547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.104460 B = 5418.610545 C = 6156.109448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.037 3.963 3 N -0.203 5.203 4 N -0.338 5.338 5 C 0.126 3.874 6 C 0.029 3.971 7 C -0.545 4.545 8 H 0.074 0.926 9 C 0.002 3.998 10 N -0.934 5.934 11 Si 0.976 3.024 12 H -0.268 1.268 13 H -0.283 1.283 14 H -0.258 1.258 15 C 0.479 3.521 16 O -0.545 6.545 17 C -0.270 4.270 18 C 0.554 3.446 19 O -0.517 6.517 20 O -0.499 6.499 21 C 0.083 3.917 22 C -0.130 4.130 23 H 0.108 0.892 24 H 0.082 0.918 25 H 0.117 0.883 26 H 0.089 0.911 27 H 0.113 0.887 28 H 0.002 0.998 29 H -0.020 1.020 30 H 0.266 0.734 31 H 0.429 0.571 32 H 0.117 0.883 33 H 0.122 0.878 34 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.293 -13.245 9.267 19.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.131 4.131 3 N -0.030 5.030 4 N -0.158 5.158 5 C 0.008 3.992 6 C -0.009 4.009 7 C -0.583 4.583 8 H 0.092 0.908 9 C -0.196 4.196 10 N -0.573 5.573 11 Si 0.799 3.201 12 H -0.193 1.193 13 H -0.209 1.209 14 H -0.183 1.183 15 C 0.277 3.723 16 O -0.424 6.424 17 C -0.282 4.282 18 C 0.400 3.600 19 O -0.410 6.410 20 O -0.311 6.311 21 C 0.076 3.924 22 C -0.185 4.185 23 H 0.126 0.874 24 H 0.101 0.899 25 H 0.136 0.864 26 H 0.108 0.892 27 H 0.131 0.869 28 H 0.020 0.980 29 H -0.002 1.002 30 H 0.075 0.925 31 H 0.290 0.710 32 H 0.134 0.866 33 H 0.140 0.860 34 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -10.950 -12.134 9.118 18.715 hybrid contribution 1.641 -0.373 -0.511 1.759 sum -9.309 -12.507 8.606 17.809 Atomic orbital electron populations 1.20881 0.81787 1.05877 1.05809 1.22674 1.00382 0.85413 1.04587 1.70726 0.94958 1.30586 1.06749 1.47134 1.02309 1.10364 1.55944 1.22212 0.97976 0.78365 1.00681 1.19147 0.95565 0.95800 0.90425 1.21400 1.40678 1.02605 0.93619 0.90765 1.26050 0.96007 1.02714 0.94873 1.70116 1.48462 1.40516 0.98220 0.85339 0.79104 0.78315 0.77319 1.19281 1.20860 1.18254 1.18260 0.88237 0.85846 0.79937 1.90948 1.13442 1.86283 1.51701 1.20526 0.94632 0.91267 1.21805 1.19644 0.81123 0.87169 0.72072 1.90814 1.72453 1.29625 1.48081 1.84843 1.19480 1.42736 1.84058 1.22165 0.90680 0.99612 0.79987 1.21512 1.01393 0.89808 1.05827 0.87357 0.89938 0.86434 0.89240 0.86871 0.97955 1.00210 0.92534 0.71011 0.86554 0.85983 0.89095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.06 9.80 71.24 0.70 -0.37 16 2 C 0.04 0.91 6.87 43.18 0.30 1.21 16 3 N -0.20 -6.83 10.76 -47.44 -0.51 -7.34 16 4 N -0.34 -13.76 3.22 -471.39 -1.52 -15.27 16 5 C 0.13 5.63 5.49 86.38 0.47 6.10 16 6 C 0.03 1.59 5.29 29.85 0.16 1.75 16 7 C -0.54 -31.26 9.11 25.60 0.23 -31.03 16 8 H 0.07 3.95 7.74 -2.91 -0.02 3.92 16 9 C 0.00 0.11 5.46 84.66 0.46 0.58 16 10 N -0.93 -57.97 13.29 21.45 0.28 -57.69 16 11 Si 0.98 44.31 29.54 68.60 2.03 46.33 16 12 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 13 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 14 H -0.26 -10.96 7.11 99.48 0.71 -10.25 16 15 C 0.48 20.27 7.50 85.28 0.64 20.91 16 16 O -0.54 -27.06 14.93 14.74 0.22 -26.84 16 17 C -0.27 -9.07 5.95 -19.60 -0.12 -9.18 16 18 C 0.55 17.33 8.22 70.19 0.58 17.91 16 19 O -0.52 -14.86 14.38 19.75 0.28 -14.58 16 20 O -0.50 -15.30 11.79 -50.27 -0.59 -15.89 16 21 C 0.08 2.04 5.99 -19.16 -0.11 1.93 16 22 C -0.13 -1.93 8.61 71.24 0.61 -1.32 16 23 H 0.11 0.86 8.14 -2.39 -0.02 0.84 16 24 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 25 H 0.12 0.70 5.99 -2.39 -0.01 0.68 16 26 H 0.09 4.08 7.36 -2.39 -0.02 4.06 16 27 H 0.11 4.44 8.13 -2.39 -0.02 4.43 16 28 H 0.00 0.12 8.14 -2.39 -0.02 0.10 16 29 H -0.02 -1.31 8.14 -2.39 -0.02 -1.33 16 30 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 31 H 0.43 7.65 9.11 -74.06 -0.67 6.98 16 32 H 0.12 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.12 0.86 5.89 -2.38 -0.01 0.85 16 34 H 0.09 1.71 5.96 -2.39 -0.01 1.69 16 Total: -1.00 -81.19 296.73 4.59 -76.60 By element: Atomic # 1 Polarization: 5.72 SS G_CDS: 0.48 Total: 6.20 kcal Atomic # 6 Polarization: 4.56 SS G_CDS: 3.92 Total: 8.48 kcal Atomic # 7 Polarization: -78.56 SS G_CDS: -1.74 Total: -80.30 kcal Atomic # 8 Polarization: -57.22 SS G_CDS: -0.09 Total: -57.30 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 2.03 Total: 46.33 kcal Total: -81.19 4.59 -76.60 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000304304027.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.340 kcal (2) G-P(sol) polarization free energy of solvation -81.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds