Wall clock time and date at job start Mon Mar 30 2020 05:05:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.37965 * 119.98708 * 2 1 4 4 C 1.38437 * 120.19678 * 180.02562 * 3 2 1 5 5 F 1.35099 * 119.90740 * 179.97438 * 4 3 2 6 6 C 1.39283 * 120.18259 * 359.97438 * 4 3 2 7 7 N 1.39874 * 120.01254 * 180.02562 * 6 4 3 8 8 C 1.38454 * 119.97757 * 0.02562 * 6 4 3 9 9 C 1.39603 * 119.99110 * 180.02562 * 2 1 3 10 10 C 1.47730 * 120.09343 * 359.97438 * 9 2 1 11 11 O 1.21568 * 120.00251 * 305.92240 * 10 9 2 12 12 N 1.34777 * 120.00302 * 125.91945 * 10 9 2 13 13 C 1.46496 * 119.99773 * 4.36447 * 12 10 9 14 14 C 1.46500 * 120.00314 * 184.36390 * 12 10 9 15 15 C 1.50706 * 109.46891 * 89.99856 * 14 12 10 16 16 H 1.07995 * 120.00449 * 0.02562 * 15 14 12 17 17 C 1.37876 * 119.99529 * 179.97438 * 15 14 12 18 18 N 1.31507 * 120.00548 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99604 * 180.02562 * 17 15 14 20 20 H 1.48494 * 109.47141 * 60.00183 * 19 17 15 21 21 H 1.48502 * 109.47205 * 180.02562 * 19 17 15 22 22 H 1.48496 * 109.47346 * 299.99936 * 19 17 15 23 23 H 1.08990 * 109.47404 * 85.27597 * 1 2 3 24 24 H 1.09004 * 109.46893 * 205.28507 * 1 2 3 25 25 H 1.09005 * 109.46822 * 325.27594 * 1 2 3 26 26 H 1.07998 * 119.90565 * 0.04530 * 3 2 1 27 27 H 0.96994 * 120.00280 * 179.97438 * 7 6 4 28 28 H 0.97001 * 119.99856 * 359.97438 * 7 6 4 29 29 H 1.08003 * 120.09649 * 179.72888 * 8 6 4 30 30 H 1.08996 * 109.47272 * 84.71695 * 13 12 10 31 31 H 1.09002 * 109.47438 * 204.72267 * 13 12 10 32 32 H 1.09008 * 109.47425 * 324.71654 * 13 12 10 33 33 H 1.09002 * 109.47320 * 209.99842 * 14 12 10 34 34 H 1.08998 * 109.47334 * 330.00036 * 14 12 10 35 35 H 0.97007 * 120.00424 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1966 1.1950 0.0000 4 6 3.5809 1.2000 -0.0005 5 9 4.2503 2.3736 -0.0011 6 6 4.2856 -0.0014 -0.0005 7 7 5.6843 0.0079 -0.0005 8 6 3.6011 -1.2049 -0.0005 9 6 2.2048 -1.2091 -0.0005 10 6 1.4681 -2.4896 -0.0005 11 8 0.6299 -2.7086 0.8523 12 7 1.7251 -3.4150 -0.9461 13 6 2.8004 -3.1923 -1.9158 14 6 0.9292 -4.6436 -1.0042 15 6 -0.2643 -4.4271 -1.8985 16 1 -0.4148 -3.4702 -2.3761 17 6 -1.1637 -5.4510 -2.1077 18 7 -0.9803 -6.6163 -1.5265 19 14 -2.6427 -5.1828 -3.2167 20 1 -2.1796 -4.8276 -4.5822 21 1 -3.4496 -6.4281 -3.2756 22 1 -3.4752 -4.0795 -2.6737 23 1 -0.3633 0.0846 -1.0241 24 1 -0.3633 -0.9292 0.4390 25 1 -0.3633 0.8447 0.5854 26 1 1.6548 2.1292 0.0007 27 1 6.1749 -0.8289 -0.0002 28 1 6.1637 0.8511 -0.0009 29 1 4.1456 -2.1376 -0.0050 30 1 3.7493 -3.5130 -1.4860 31 1 2.5986 -3.7662 -2.8203 32 1 2.8533 -2.1319 -2.1626 33 1 1.5399 -5.4536 -1.4030 34 1 0.5896 -4.9042 -0.0018 35 1 -1.6133 -7.3366 -1.6733 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306023971.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:05:52 Heat of formation + Delta-G solvation = -78.053944 kcal Electronic energy + Delta-G solvation = -20104.167226 eV Core-core repulsion = 16822.504136 eV Total energy + Delta-G solvation = -3281.663090 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.84265 -41.37552 -39.38849 -36.74517 -35.92264 -34.75330 -32.16672 -31.58679 -29.59798 -27.65241 -26.88878 -25.46487 -24.05222 -22.58430 -20.44256 -18.72390 -18.66050 -18.20757 -18.12042 -17.24418 -16.70671 -16.58512 -16.30173 -15.94874 -15.69585 -14.95254 -14.70488 -14.49104 -14.42303 -14.13067 -13.65372 -13.50953 -13.48934 -13.34802 -13.07566 -12.87219 -12.74303 -12.52813 -12.20664 -12.16023 -11.73274 -11.33126 -10.72175 -10.62753 -9.84487 -9.45130 -8.47234 -8.21153 -6.35982 -0.12367 0.35588 1.38610 1.42663 1.49810 1.75117 2.25388 2.43065 2.60544 2.84187 3.08750 3.19613 3.56005 3.72462 4.01847 4.22147 4.40105 4.54411 4.63519 4.68597 4.76662 4.79180 4.89979 4.95509 5.00741 5.04522 5.23312 5.24375 5.55378 5.56499 5.71520 5.82524 6.06209 6.40232 6.66516 6.73741 6.89405 7.25583 7.40900 8.85856 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.030174 B = 0.005012 C = 0.004664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.736583 B = 5585.719878 C = 6002.565298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.083 4.083 3 C -0.101 4.101 4 C 0.028 3.972 5 F -0.139 7.139 6 C 0.190 3.810 7 N -0.859 5.859 8 C -0.139 4.139 9 C -0.091 4.091 10 C 0.547 3.453 11 O -0.583 6.583 12 N -0.599 5.599 13 C 0.080 3.920 14 C 0.258 3.742 15 C -0.544 4.544 16 H 0.053 0.947 17 C 0.010 3.990 18 N -0.927 5.927 19 Si 0.966 3.034 20 H -0.261 1.261 21 H -0.278 1.278 22 H -0.276 1.276 23 H 0.071 0.929 24 H 0.053 0.947 25 H 0.091 0.909 26 H 0.162 0.838 27 H 0.414 0.586 28 H 0.410 0.590 29 H 0.150 0.850 30 H 0.077 0.923 31 H 0.070 0.930 32 H 0.079 0.921 33 H 0.028 0.972 34 H 0.002 0.998 35 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.624 15.456 -0.412 20.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.086 4.086 3 C -0.120 4.120 4 C 0.004 3.996 5 F -0.118 7.118 6 C 0.083 3.917 7 N -0.401 5.401 8 C -0.163 4.163 9 C -0.095 4.095 10 C 0.335 3.665 11 O -0.465 6.465 12 N -0.329 5.329 13 C -0.062 4.062 14 C 0.137 3.863 15 C -0.582 4.582 16 H 0.072 0.928 17 C -0.189 4.189 18 N -0.567 5.567 19 Si 0.790 3.210 20 H -0.185 1.185 21 H -0.204 1.204 22 H -0.202 1.202 23 H 0.089 0.911 24 H 0.072 0.928 25 H 0.110 0.890 26 H 0.180 0.820 27 H 0.245 0.755 28 H 0.240 0.760 29 H 0.168 0.832 30 H 0.095 0.905 31 H 0.089 0.911 32 H 0.097 0.903 33 H 0.046 0.954 34 H 0.020 0.980 35 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 13.157 15.159 0.009 20.073 hybrid contribution -0.525 -0.278 -0.342 0.686 sum 12.632 14.881 -0.333 19.522 Atomic orbital electron populations 1.20909 0.90733 1.03783 1.02735 1.19528 0.96545 0.90867 1.01663 1.20832 0.91636 0.98898 1.00668 1.17280 0.90128 0.79984 1.12210 1.91443 1.80396 1.45262 1.94702 1.17458 0.86102 0.91443 0.96658 1.42274 1.01064 1.12534 1.84205 1.20601 0.91652 0.97421 1.06606 1.19579 0.94071 0.92240 1.03636 1.18762 0.82256 0.84221 0.81218 1.90697 1.36471 1.79717 1.39624 1.48108 1.34535 1.19889 1.30337 1.21990 0.89087 1.02708 0.92417 1.18845 0.90034 0.81549 0.95882 1.21648 1.09354 0.98354 1.28894 0.92826 1.25825 1.00919 0.94619 0.97519 1.70038 1.38285 1.03782 1.44585 0.85491 0.78634 0.77543 0.79309 1.18550 1.20353 1.20185 0.91081 0.92778 0.89020 0.82043 0.75472 0.76038 0.83225 0.90486 0.91074 0.90263 0.95376 0.97978 0.92361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.96 9.68 71.24 0.69 -3.27 16 2 C -0.08 -2.52 5.91 -19.60 -0.12 -2.63 16 3 C -0.10 -2.41 9.67 22.25 0.22 -2.20 16 4 C 0.03 0.64 7.31 22.57 0.17 0.80 16 5 F -0.14 -2.93 16.63 44.97 0.75 -2.18 16 6 C 0.19 4.02 6.75 38.16 0.26 4.28 16 7 N -0.86 -11.76 9.09 -51.29 -0.47 -12.22 16 8 C -0.14 -3.52 7.80 22.66 0.18 -3.34 16 9 C -0.09 -3.04 4.70 -20.10 -0.09 -3.13 16 10 C 0.55 23.98 6.54 86.75 0.57 24.55 16 11 O -0.58 -31.12 14.61 -3.93 -0.06 -31.18 16 12 N -0.60 -26.04 2.86 -854.70 -2.44 -28.48 16 13 C 0.08 2.49 9.16 127.77 1.17 3.66 16 14 C 0.26 13.98 5.17 85.64 0.44 14.42 16 15 C -0.54 -31.34 9.39 25.60 0.24 -31.10 16 16 H 0.05 3.06 7.81 -2.91 -0.02 3.03 16 17 C 0.01 0.60 5.46 84.66 0.46 1.06 16 18 N -0.93 -55.90 13.29 21.45 0.28 -55.61 16 19 Si 0.97 44.67 29.54 68.60 2.03 46.70 16 20 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 21 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 22 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 23 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 24 H 0.05 2.20 5.52 -2.39 -0.01 2.18 16 25 H 0.09 2.29 8.12 -2.38 -0.02 2.27 16 26 H 0.16 2.98 8.06 -2.91 -0.02 2.95 16 27 H 0.41 3.96 8.84 -92.71 -0.82 3.14 16 28 H 0.41 4.54 8.31 -92.71 -0.77 3.77 16 29 H 0.15 3.28 6.81 -2.91 -0.02 3.26 16 30 H 0.08 1.88 7.28 -2.39 -0.02 1.86 16 31 H 0.07 2.27 8.03 -2.39 -0.02 2.25 16 32 H 0.08 2.16 6.48 -2.38 -0.02 2.15 16 33 H 0.03 1.53 8.07 -2.39 -0.02 1.51 16 34 H 0.00 0.13 7.36 -2.39 -0.02 0.11 16 35 H 0.27 15.14 8.31 -92.70 -0.77 14.37 16 Total: -1.00 -73.12 302.02 3.82 -69.30 By element: Atomic # 1 Polarization: 11.03 SS G_CDS: -0.45 Total: 10.58 kcal Atomic # 6 Polarization: -1.08 SS G_CDS: 4.18 Total: 3.09 kcal Atomic # 7 Polarization: -93.69 SS G_CDS: -2.62 Total: -96.32 kcal Atomic # 8 Polarization: -31.12 SS G_CDS: -0.06 Total: -31.18 kcal Atomic # 9 Polarization: -2.93 SS G_CDS: 0.75 Total: -2.18 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.70 kcal Total: -73.12 3.82 -69.30 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306023971.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.755 kcal (2) G-P(sol) polarization free energy of solvation -73.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds