Wall clock time and date at job start Mon Mar 30 2020 05:19:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 N 1.46506 * 109.47289 * 120.00172 * 2 1 3 5 5 C 1.34984 * 125.96957 * 274.72005 * 4 2 1 6 6 C 1.35221 * 107.87184 * 179.83591 * 5 4 2 7 7 C 1.40455 * 107.87036 * 0.41790 * 6 5 4 8 8 N 1.39934 * 125.98440 * 179.71537 * 7 6 5 9 9 C 1.34781 * 119.99668 * 0.02562 * 8 7 6 10 10 O 1.21471 * 120.00009 * 0.02562 * 9 8 7 11 11 C 1.48731 * 120.00006 * 179.97438 * 9 8 7 12 12 O 1.21517 * 119.99765 * 0.02562 * 11 9 8 13 13 N 1.34770 * 119.99998 * 180.02562 * 11 9 8 14 14 C 1.36134 * 119.99857 * 180.02562 * 13 11 9 15 15 H 1.07992 * 120.00000 * 359.97438 * 14 13 11 16 16 C 1.39583 * 119.99543 * 179.97438 * 14 13 11 17 17 N 1.31012 * 120.00460 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 119.99439 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47397 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.47244 * 120.00165 * 18 16 14 21 21 H 1.48499 * 109.47110 * 240.00133 * 18 16 14 22 22 N 1.31279 * 108.03534 * 359.74204 * 7 6 5 23 23 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 24 24 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 25 25 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 27 27 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 28 28 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 29 29 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 30 30 H 1.08003 * 126.06473 * 359.97438 * 5 4 2 31 31 H 1.08001 * 126.06371 * 180.15576 * 6 5 4 32 32 H 0.96991 * 120.00209 * 180.02562 * 8 7 6 33 33 H 0.96995 * 120.00108 * 359.97438 * 13 11 9 34 34 H 0.97001 * 120.00370 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0184 -0.6907 1.1962 5 6 2.1979 -0.1365 2.4139 6 6 2.6555 -1.1001 3.2449 7 6 2.7696 -2.2887 2.5053 8 7 3.2146 -3.5219 2.9944 9 6 3.5808 -3.6422 4.2859 10 8 3.5241 -2.6802 5.0253 11 6 4.0533 -4.9531 4.8059 12 8 4.1095 -5.9155 4.0662 13 7 4.4189 -5.0734 6.0975 14 6 4.8519 -6.2732 6.5733 15 1 4.9019 -7.1285 5.9160 16 6 5.2311 -6.3976 7.9109 17 7 5.1699 -5.3601 8.7084 18 14 5.8258 -8.0437 8.5636 19 1 5.8010 -9.0481 7.4701 20 1 7.2129 -7.9017 9.0745 21 1 4.9358 -8.4901 9.6653 22 7 2.3861 -2.0399 1.2746 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 1.8934 -0.5138 -0.8899 27 1 1.6768 1.9562 0.8900 28 1 3.1300 1.4424 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 2.0075 0.8932 2.6782 31 1 2.8952 -0.9765 4.2907 32 1 3.2595 -4.2901 2.4040 33 1 4.3744 -4.3051 6.6878 34 1 5.4338 -5.4465 9.6379 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306052685.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:19:53 Heat of formation + Delta-G solvation = 11.734540 kcal Electronic energy + Delta-G solvation = -19352.979936 eV Core-core repulsion = 16095.130329 eV Total energy + Delta-G solvation = -3257.849608 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.23448 -39.50529 -37.37324 -35.95434 -34.58500 -33.67521 -31.47855 -29.92332 -29.20621 -27.63252 -26.06070 -23.81646 -22.68380 -20.78996 -20.17708 -19.03035 -18.34373 -17.36928 -16.86112 -16.09066 -15.49240 -15.32561 -14.80834 -14.64917 -14.38684 -13.94345 -13.53868 -13.25066 -13.09428 -12.85954 -12.62301 -12.57639 -12.36142 -11.82535 -11.73767 -11.42878 -11.25236 -10.62216 -10.54656 -10.51175 -10.43415 -10.25886 -9.78834 -8.65732 -8.36484 -8.29477 -7.99166 -6.73950 -4.04963 1.82893 2.27038 2.33492 3.05871 3.14324 3.20858 3.28330 3.37822 4.01545 4.24145 4.29604 4.58492 4.73842 4.76322 4.93514 5.12462 5.12588 5.21881 5.33250 5.38995 5.53044 5.76148 5.82460 5.90810 5.95050 6.00536 6.46753 7.06864 7.20278 7.25154 7.36084 7.70815 8.07598 8.25179 8.49090 8.88386 9.22983 9.76735 10.40528 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.061293 B = 0.003397 C = 0.003279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 456.712538 B = 8240.148549 C = 8538.319068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.160 3.840 3 C -0.164 4.164 4 N -0.368 5.368 5 C 0.058 3.942 6 C -0.266 4.266 7 C 0.307 3.693 8 N -0.620 5.620 9 C 0.522 3.478 10 O -0.521 6.521 11 C 0.395 3.605 12 O -0.594 6.594 13 N -0.492 5.492 14 C -0.303 4.303 15 H 0.115 0.885 16 C 0.032 3.968 17 N -0.864 5.864 18 Si 0.940 3.060 19 H -0.262 1.262 20 H -0.276 1.276 21 H -0.277 1.277 22 N -0.329 5.329 23 H 0.074 0.926 24 H 0.062 0.938 25 H 0.065 0.935 26 H 0.100 0.900 27 H 0.066 0.934 28 H 0.067 0.933 29 H 0.080 0.920 30 H 0.172 0.828 31 H 0.173 0.827 32 H 0.424 0.576 33 H 0.406 0.594 34 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.510 12.537 -12.163 18.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.058 3.942 3 C -0.222 4.222 4 N -0.153 5.153 5 C -0.088 4.088 6 C -0.296 4.296 7 C 0.051 3.949 8 N -0.270 5.270 9 C 0.307 3.693 10 O -0.394 6.394 11 C 0.179 3.821 12 O -0.482 6.482 13 N -0.126 5.126 14 C -0.433 4.433 15 H 0.133 0.867 16 C -0.176 4.176 17 N -0.502 5.502 18 Si 0.765 3.235 19 H -0.186 1.186 20 H -0.202 1.202 21 H -0.202 1.202 22 N -0.159 5.159 23 H 0.093 0.907 24 H 0.081 0.919 25 H 0.084 0.916 26 H 0.118 0.882 27 H 0.085 0.915 28 H 0.086 0.914 29 H 0.099 0.901 30 H 0.189 0.811 31 H 0.190 0.810 32 H 0.262 0.738 33 H 0.241 0.759 34 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -6.669 12.194 -13.101 19.100 hybrid contribution 0.344 -0.219 1.186 1.254 sum -6.325 11.975 -11.914 18.038 Atomic orbital electron populations 1.22251 0.93898 1.03358 1.02814 1.21163 0.94569 0.92463 0.85999 1.22192 1.02428 0.94120 1.03486 1.48327 1.52266 1.06248 1.08488 1.22441 1.01240 0.99784 0.85303 1.21949 1.13914 0.90625 1.03108 1.19249 0.96689 0.87562 0.91412 1.42410 1.63393 1.09332 1.11822 1.20879 0.77059 0.90680 0.80666 1.90617 1.52102 1.40153 1.56531 1.18551 0.91218 0.87567 0.84731 1.90615 1.61873 1.38977 1.56778 1.41545 1.50309 1.12964 1.07782 1.19987 1.39642 0.89156 0.94554 0.86685 1.25624 0.96366 0.99848 0.95750 1.69486 1.43284 1.30432 1.06956 0.85638 0.78349 0.80473 0.79014 1.18602 1.20202 1.20209 1.77358 1.26998 0.94302 1.17237 0.90713 0.91900 0.91568 0.88192 0.91482 0.91418 0.90123 0.81096 0.80973 0.73806 0.75878 0.90799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.24 9.52 37.16 0.35 -0.89 16 2 C 0.16 1.42 3.93 -67.93 -0.27 1.15 16 3 C -0.16 -1.01 8.83 37.15 0.33 -0.68 16 4 N -0.37 -4.88 3.53 -54.88 -0.19 -5.07 16 5 C 0.06 0.75 10.58 -17.24 -0.18 0.57 16 6 C -0.27 -4.51 9.60 -39.82 -0.38 -4.89 16 7 C 0.31 5.66 8.10 -154.54 -1.25 4.40 16 8 N -0.62 -12.09 5.43 -11.75 -0.06 -12.16 16 9 C 0.52 11.54 7.83 -11.92 -0.09 11.45 16 10 O -0.52 -11.84 13.59 5.39 0.07 -11.76 16 11 C 0.40 9.88 7.81 -11.93 -0.09 9.79 16 12 O -0.59 -15.89 16.03 5.35 0.09 -15.80 16 13 N -0.49 -12.88 5.25 -11.62 -0.06 -12.94 16 14 C -0.30 -8.18 9.67 -15.14 -0.15 -8.32 16 15 H 0.12 3.18 7.15 -52.49 -0.38 2.80 16 16 C 0.03 0.81 5.51 -17.40 -0.10 0.71 16 17 N -0.86 -22.60 13.03 55.53 0.72 -21.87 16 18 Si 0.94 19.68 29.56 -169.99 -5.02 14.66 16 19 H -0.26 -5.47 7.11 56.52 0.40 -5.06 16 20 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 21 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 22 N -0.33 -5.57 12.60 31.41 0.40 -5.17 16 23 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 24 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 27 H 0.07 0.37 7.14 -51.93 -0.37 0.00 16 28 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.17 1.52 7.24 -52.48 -0.38 1.14 16 31 H 0.17 3.14 5.91 -52.49 -0.31 2.83 16 32 H 0.42 7.84 8.28 -40.82 -0.34 7.50 16 33 H 0.41 10.60 7.35 -40.82 -0.30 10.30 16 34 H 0.28 6.80 8.30 -40.82 -0.34 6.46 16 LS Contribution 301.93 15.07 4.55 4.55 Total: -1.00 -31.17 301.93 -5.09 -36.27 By element: Atomic # 1 Polarization: 19.76 SS G_CDS: -3.75 Total: 16.02 kcal Atomic # 6 Polarization: 15.12 SS G_CDS: -1.83 Total: 13.29 kcal Atomic # 7 Polarization: -58.02 SS G_CDS: 0.80 Total: -57.22 kcal Atomic # 8 Polarization: -27.73 SS G_CDS: 0.16 Total: -27.57 kcal Atomic # 14 Polarization: 19.68 SS G_CDS: -5.02 Total: 14.66 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -31.17 -5.09 -36.27 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306052685.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.000 kcal (2) G-P(sol) polarization free energy of solvation -31.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.265 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds