Wall clock time and date at job start Mon Mar 30 2020 05:00:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86805 * 120.00004 * 2 1 4 4 H 1.48502 * 109.46938 * 180.02562 * 3 2 1 5 5 H 1.48492 * 109.47313 * 300.00107 * 3 2 1 6 6 H 1.48496 * 109.46620 * 60.00438 * 3 2 1 7 7 C 1.38810 * 120.00251 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00558 * 179.97438 * 7 2 1 9 9 N 1.36943 * 120.00115 * 359.97438 * 7 2 1 10 10 C 1.46492 * 120.00670 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47641 * 186.37777 * 10 9 7 12 12 H 1.09003 * 109.46626 * 303.43284 * 11 10 9 13 13 C 1.50702 * 109.47175 * 183.43176 * 11 10 9 14 14 C 1.33390 * 125.20434 * 105.59874 * 13 11 10 15 15 C 1.38421 * 114.91738 * 180.20710 * 14 13 11 16 16 C 1.33376 * 114.92318 * 359.48665 * 15 14 13 17 17 S 1.75882 * 109.59717 * 0.27425 * 16 15 14 18 18 N 1.46898 * 109.47145 * 63.42751 * 11 10 9 19 19 C 1.48527 * 111.00125 * 168.35191 * 18 11 10 20 20 C 1.54933 * 103.23180 * 159.72024 * 19 18 11 21 21 C 1.54597 * 102.91908 * 322.58845 * 20 19 18 22 22 C 1.47904 * 111.00135 * 285.74628 * 18 11 10 23 23 H 0.96998 * 120.00118 * 0.02562 * 1 2 3 24 24 H 0.97005 * 119.99646 * 0.02562 * 9 7 2 25 25 H 1.08997 * 109.47344 * 66.36922 * 10 9 7 26 26 H 1.09003 * 109.46668 * 306.37690 * 10 9 7 27 27 H 1.07996 * 122.53698 * 359.96560 * 14 13 11 28 28 H 1.08006 * 122.53041 * 179.75790 * 15 14 13 29 29 H 1.08005 * 125.20546 * 180.24787 * 16 15 14 30 30 H 1.09006 * 110.66842 * 278.16074 * 19 18 11 31 31 H 1.09001 * 110.66597 * 41.28441 * 19 18 11 32 32 H 1.08996 * 110.73007 * 204.22786 * 20 19 18 33 33 H 1.09002 * 110.72222 * 80.94263 * 20 19 18 34 34 H 1.09003 * 110.30391 * 263.03724 * 21 20 19 35 35 H 1.09003 * 110.30966 * 140.87165 * 21 20 19 36 36 H 1.08998 * 109.91578 * 333.51184 * 22 18 11 37 37 H 1.09003 * 109.91390 * 94.80476 * 22 18 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8915 2.3965 -1.2124 6 1 1.8915 2.3963 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 6 1.0716 -4.8153 -0.1608 12 1 0.3255 -4.7695 0.6326 13 6 1.8150 -6.1235 -0.0763 14 6 1.7943 -6.9537 0.9675 15 6 2.5605 -8.0969 0.8186 16 6 3.1947 -8.2002 -0.3501 17 16 2.8363 -6.7928 -1.3422 18 7 0.4052 -4.7141 -1.4660 19 6 -0.3452 -5.9571 -1.7784 20 6 -1.3619 -5.4970 -2.8531 21 6 -1.7569 -4.0819 -2.3719 22 6 -0.5976 -3.6269 -1.4663 23 1 -0.4850 0.8400 -0.0004 24 1 0.3556 -2.3881 -0.0005 25 1 2.5964 -3.7655 0.9409 26 1 2.7675 -3.6667 -0.8280 27 1 1.2261 -6.7476 1.8625 28 1 2.6353 -8.8503 1.5889 29 1 3.8314 -9.0221 -0.6425 30 1 0.3225 -6.7187 -2.1814 31 1 -0.8623 -6.3271 -0.8930 32 1 -2.2305 -6.1553 -2.8695 33 1 -0.8914 -5.4530 -3.8354 34 1 -2.6870 -4.1211 -1.8049 35 1 -1.8596 -3.4080 -3.2225 36 1 -0.9622 -3.4578 -0.4531 37 1 -0.1543 -2.7130 -1.8617 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309652812.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:00:56 Heat of formation + Delta-G solvation = 60.312327 kcal Electronic energy + Delta-G solvation = -18452.163630 eV Core-core repulsion = 15742.713728 eV Total energy + Delta-G solvation = -2709.449902 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.16508 -37.34629 -34.89124 -32.82433 -30.50399 -29.25022 -28.27406 -26.65416 -24.18169 -22.86532 -21.24079 -20.61723 -20.35553 -19.06744 -17.36340 -16.57125 -15.84827 -15.29255 -15.04127 -14.61767 -13.74296 -13.57341 -13.28834 -12.95319 -12.67062 -12.61704 -12.58850 -12.27501 -12.03919 -11.32302 -11.26220 -10.95432 -10.89827 -10.79102 -10.74166 -10.56436 -10.44581 -10.19257 -9.94252 -9.63064 -8.84437 -8.48274 -8.22603 -7.98098 -6.87202 -5.74095 -3.01274 1.15670 1.83478 2.26051 2.87804 3.45873 3.51985 3.53935 4.33485 4.61061 4.83390 4.98380 5.13683 5.17561 5.32044 5.57067 5.60077 5.63066 5.66916 5.71539 5.81451 5.88935 6.00589 6.08948 6.16225 6.21256 6.29270 6.33475 6.43373 6.49447 6.59314 6.68073 6.82571 6.89888 7.35712 7.47783 7.75036 8.45292 9.56804 10.12836 10.48477 11.49152 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.019907 B = 0.006207 C = 0.005107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1406.184132 B = 4509.934916 C = 5481.022708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.014 4.014 3 Si 0.906 3.094 4 H -0.281 1.281 5 H -0.292 1.292 6 H -0.293 1.293 7 C -0.233 4.233 8 H 0.070 0.930 9 N -0.733 5.733 10 C 0.166 3.834 11 C 0.135 3.865 12 H 0.059 0.941 13 C -0.150 4.150 14 C -0.150 4.150 15 C -0.132 4.132 16 C -0.238 4.238 17 S 0.138 5.862 18 N -0.502 5.502 19 C 0.029 3.971 20 C -0.121 4.121 21 C -0.131 4.131 22 C 0.043 3.957 23 H 0.254 0.746 24 H 0.387 0.613 25 H 0.021 0.979 26 H 0.036 0.964 27 H 0.135 0.865 28 H 0.133 0.867 29 H 0.158 0.842 30 H 0.079 0.921 31 H 0.038 0.962 32 H 0.064 0.936 33 H 0.071 0.929 34 H 0.061 0.939 35 H 0.069 0.931 36 H 0.047 0.953 37 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.177 -16.661 -2.549 16.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.210 4.210 3 Si 0.738 3.262 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.220 1.220 7 C -0.364 4.364 8 H 0.088 0.912 9 N -0.381 5.381 10 C 0.038 3.962 11 C 0.025 3.975 12 H 0.076 0.924 13 C -0.268 4.268 14 C -0.180 4.180 15 C -0.163 4.163 16 C -0.374 4.374 17 S 0.402 5.598 18 N -0.227 5.227 19 C -0.099 4.099 20 C -0.160 4.160 21 C -0.169 4.169 22 C -0.084 4.084 23 H 0.064 0.936 24 H 0.224 0.776 25 H 0.038 0.962 26 H 0.054 0.946 27 H 0.153 0.847 28 H 0.151 0.849 29 H 0.176 0.824 30 H 0.097 0.903 31 H 0.057 0.943 32 H 0.083 0.917 33 H 0.090 0.910 34 H 0.079 0.921 35 H 0.088 0.912 36 H 0.066 0.934 37 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 1.168 -15.965 -4.371 16.594 hybrid contribution -0.844 0.287 2.227 2.398 sum 0.324 -15.679 -2.145 15.828 Atomic orbital electron populations 1.69653 1.05023 1.25451 1.58331 1.24689 0.95525 0.97528 1.03252 0.86119 0.78828 0.84191 0.77101 1.20611 1.21915 1.21998 1.19282 0.91117 0.84090 1.41945 0.91203 1.42695 1.06199 0.99789 1.89379 1.20679 0.92871 0.84535 0.98134 1.20621 0.95684 0.90181 0.91057 0.92366 1.24493 1.03911 1.00486 0.97943 1.20103 1.03330 0.94787 0.99796 1.20045 0.99386 0.98982 0.97925 1.25721 1.08313 1.03908 0.99473 1.84462 1.43955 1.13105 1.18297 1.64898 1.26931 1.03245 1.27629 1.23326 0.95356 0.93832 0.97414 1.22451 0.98052 0.96388 0.99066 1.22449 0.98231 0.96405 0.99853 1.23038 0.90647 0.95905 0.98801 0.93644 0.77603 0.96151 0.94649 0.84682 0.84881 0.82431 0.90257 0.94345 0.91738 0.91000 0.92050 0.91180 0.93436 0.87574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -27.88 13.06 55.49 0.72 -27.15 16 2 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 3 Si 0.91 22.59 29.55 -169.99 -5.02 17.57 16 4 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 5 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 6 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 7 C -0.23 -6.58 9.99 -15.06 -0.15 -6.73 16 8 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 9 N -0.73 -18.70 4.58 -59.91 -0.27 -18.98 16 10 C 0.17 3.56 5.87 -4.05 -0.02 3.54 16 11 C 0.14 2.41 2.16 -68.86 -0.15 2.27 16 12 H 0.06 1.08 7.65 -51.93 -0.40 0.68 16 13 C -0.15 -2.30 4.13 -36.00 -0.15 -2.45 16 14 C -0.15 -2.06 10.03 -41.21 -0.41 -2.47 16 15 C -0.13 -1.58 10.18 -41.21 -0.42 -2.00 16 16 C -0.24 -2.79 11.23 29.03 0.33 -2.46 16 17 S 0.14 1.91 21.81 -107.50 -2.34 -0.44 16 18 N -0.50 -8.75 4.98 -223.89 -1.11 -9.87 16 19 C 0.03 0.42 5.38 -1.90 -0.01 0.41 16 20 C -0.12 -1.60 7.06 -24.87 -0.18 -1.78 16 21 C -0.13 -1.97 6.93 -25.38 -0.18 -2.15 16 22 C 0.04 0.81 4.77 -2.76 -0.01 0.80 16 23 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 24 H 0.39 10.02 4.36 -40.82 -0.18 9.84 16 25 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.14 1.71 8.06 -52.49 -0.42 1.29 16 28 H 0.13 1.27 8.06 -52.48 -0.42 0.84 16 29 H 0.16 1.43 8.06 -52.48 -0.42 1.01 16 30 H 0.08 1.11 6.68 -51.93 -0.35 0.76 16 31 H 0.04 0.56 8.02 -51.93 -0.42 0.14 16 32 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 36 H 0.05 0.95 6.35 -51.93 -0.33 0.62 16 37 H 0.11 2.40 7.28 -51.93 -0.38 2.02 16 LS Contribution 308.02 15.07 4.64 4.64 Total: -1.00 -29.81 308.02 -10.24 -40.05 By element: Atomic # 1 Polarization: 13.12 SS G_CDS: -5.40 Total: 7.72 kcal Atomic # 6 Polarization: -12.09 SS G_CDS: -1.45 Total: -13.54 kcal Atomic # 7 Polarization: -55.34 SS G_CDS: -0.66 Total: -56.00 kcal Atomic # 14 Polarization: 22.59 SS G_CDS: -5.02 Total: 17.57 kcal Atomic # 16 Polarization: 1.91 SS G_CDS: -2.34 Total: -0.44 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -29.81 -10.24 -40.05 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309652812.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.360 kcal (2) G-P(sol) polarization free energy of solvation -29.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.047 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds