Wall clock time and date at job start Mon Mar 30 2020 05:00:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86805 * 120.00004 * 2 1 4 4 H 1.48502 * 109.46938 * 180.02562 * 3 2 1 5 5 H 1.48492 * 109.47313 * 300.00107 * 3 2 1 6 6 H 1.48496 * 109.46620 * 60.00438 * 3 2 1 7 7 C 1.38810 * 120.00251 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00558 * 179.97438 * 7 2 1 9 9 N 1.36943 * 120.00115 * 359.97438 * 7 2 1 10 10 C 1.46492 * 120.00670 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47641 * 186.37777 * 10 9 7 12 12 H 1.09003 * 109.46626 * 303.43284 * 11 10 9 13 13 C 1.50702 * 109.47175 * 183.43176 * 11 10 9 14 14 C 1.33390 * 125.20434 * 105.59874 * 13 11 10 15 15 C 1.38421 * 114.91738 * 180.20710 * 14 13 11 16 16 C 1.33376 * 114.92318 * 359.48665 * 15 14 13 17 17 S 1.75882 * 109.59717 * 0.27425 * 16 15 14 18 18 N 1.46898 * 109.47145 * 63.42751 * 11 10 9 19 19 C 1.48527 * 111.00125 * 168.35191 * 18 11 10 20 20 C 1.54933 * 103.23180 * 159.72024 * 19 18 11 21 21 C 1.54597 * 102.91908 * 322.58845 * 20 19 18 22 22 C 1.47904 * 111.00135 * 285.74628 * 18 11 10 23 23 H 0.96998 * 120.00118 * 0.02562 * 1 2 3 24 24 H 0.97005 * 119.99646 * 0.02562 * 9 7 2 25 25 H 1.08997 * 109.47344 * 66.36922 * 10 9 7 26 26 H 1.09003 * 109.46668 * 306.37690 * 10 9 7 27 27 H 1.07996 * 122.53698 * 359.96560 * 14 13 11 28 28 H 1.08006 * 122.53041 * 179.75790 * 15 14 13 29 29 H 1.08005 * 125.20546 * 180.24787 * 16 15 14 30 30 H 1.09006 * 110.66842 * 278.16074 * 19 18 11 31 31 H 1.09001 * 110.66597 * 41.28441 * 19 18 11 32 32 H 1.08996 * 110.73007 * 204.22786 * 20 19 18 33 33 H 1.09002 * 110.72222 * 80.94263 * 20 19 18 34 34 H 1.09003 * 110.30391 * 263.03724 * 21 20 19 35 35 H 1.09003 * 110.30966 * 140.87165 * 21 20 19 36 36 H 1.08998 * 109.91578 * 333.51184 * 22 18 11 37 37 H 1.09003 * 109.91390 * 94.80476 * 22 18 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8915 2.3965 -1.2124 6 1 1.8915 2.3963 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 6 1.0716 -4.8153 -0.1608 12 1 0.3255 -4.7695 0.6326 13 6 1.8150 -6.1235 -0.0763 14 6 1.7943 -6.9537 0.9675 15 6 2.5605 -8.0969 0.8186 16 6 3.1947 -8.2002 -0.3501 17 16 2.8363 -6.7928 -1.3422 18 7 0.4052 -4.7141 -1.4660 19 6 -0.3452 -5.9571 -1.7784 20 6 -1.3619 -5.4970 -2.8531 21 6 -1.7569 -4.0819 -2.3719 22 6 -0.5976 -3.6269 -1.4663 23 1 -0.4850 0.8400 -0.0004 24 1 0.3556 -2.3881 -0.0005 25 1 2.5964 -3.7655 0.9409 26 1 2.7675 -3.6667 -0.8280 27 1 1.2261 -6.7476 1.8625 28 1 2.6353 -8.8503 1.5889 29 1 3.8314 -9.0221 -0.6425 30 1 0.3225 -6.7187 -2.1814 31 1 -0.8623 -6.3271 -0.8930 32 1 -2.2305 -6.1553 -2.8695 33 1 -0.8914 -5.4530 -3.8354 34 1 -2.6870 -4.1211 -1.8049 35 1 -1.8596 -3.4080 -3.2225 36 1 -0.9622 -3.4578 -0.4531 37 1 -0.1543 -2.7130 -1.8617 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309652812.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:00:55 Heat of formation + Delta-G solvation = 41.759607 kcal Electronic energy + Delta-G solvation = -18452.968136 eV Core-core repulsion = 15742.713728 eV Total energy + Delta-G solvation = -2710.254409 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.50656 -38.41431 -36.66416 -34.49265 -32.40018 -30.42257 -29.61175 -28.23337 -25.82653 -24.29410 -22.80968 -21.82115 -21.78934 -20.12025 -19.17456 -18.02087 -17.14263 -16.73290 -16.39109 -16.13937 -15.45552 -15.17377 -14.93549 -14.50945 -14.02236 -13.81709 -13.72086 -13.58408 -13.23592 -13.06003 -12.85232 -12.59416 -12.42434 -12.31062 -12.17844 -12.02429 -11.80996 -11.66998 -11.49084 -11.41962 -10.96756 -9.56801 -9.42873 -9.24420 -8.98610 -7.95028 -5.23178 0.11163 0.77790 1.24275 1.46420 1.47181 1.57359 1.87711 2.55443 2.98432 3.38965 3.52179 3.76943 3.90482 4.08140 4.18594 4.29023 4.31376 4.32366 4.41020 4.66270 4.69038 4.73063 4.74219 4.90258 4.94798 5.01322 5.05905 5.13194 5.22459 5.26513 5.35678 5.42788 5.48871 5.60138 5.98482 6.09728 6.27013 7.34327 8.06259 8.33904 9.28379 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.019907 B = 0.006207 C = 0.005107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1406.184132 B = 4509.934916 C = 5481.022708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.965 5.965 2 C -0.069 4.069 3 Si 0.972 3.028 4 H -0.270 1.270 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.246 4.246 8 H 0.069 0.931 9 N -0.743 5.743 10 C 0.169 3.831 11 C 0.149 3.851 12 H 0.046 0.954 13 C -0.182 4.182 14 C -0.139 4.139 15 C -0.139 4.139 16 C -0.217 4.217 17 S 0.116 5.884 18 N -0.512 5.512 19 C 0.033 3.967 20 C -0.111 4.111 21 C -0.127 4.127 22 C 0.051 3.949 23 H 0.252 0.748 24 H 0.382 0.618 25 H 0.017 0.983 26 H 0.023 0.977 27 H 0.142 0.858 28 H 0.164 0.836 29 H 0.190 0.810 30 H 0.089 0.911 31 H 0.041 0.959 32 H 0.094 0.906 33 H 0.076 0.924 34 H 0.073 0.927 35 H 0.070 0.930 36 H 0.024 0.976 37 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.695 -18.879 -2.701 19.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.615 5.615 2 C -0.262 4.262 3 Si 0.801 3.199 4 H -0.195 1.195 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.377 4.377 8 H 0.087 0.913 9 N -0.389 5.389 10 C 0.041 3.959 11 C 0.039 3.961 12 H 0.064 0.936 13 C -0.300 4.300 14 C -0.171 4.171 15 C -0.169 4.169 16 C -0.352 4.352 17 S 0.380 5.620 18 N -0.236 5.236 19 C -0.095 4.095 20 C -0.149 4.149 21 C -0.165 4.165 22 C -0.077 4.077 23 H 0.060 0.940 24 H 0.219 0.781 25 H 0.034 0.966 26 H 0.041 0.959 27 H 0.159 0.841 28 H 0.182 0.818 29 H 0.207 0.793 30 H 0.107 0.893 31 H 0.060 0.940 32 H 0.113 0.887 33 H 0.094 0.906 34 H 0.092 0.908 35 H 0.089 0.911 36 H 0.043 0.957 37 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 1.706 -18.214 -4.526 18.845 hybrid contribution -0.944 0.883 2.301 2.639 sum 0.762 -17.331 -2.225 17.490 Atomic orbital electron populations 1.69806 1.06367 1.25958 1.59411 1.25484 0.96430 1.00725 1.03544 0.85091 0.78108 0.79906 0.76748 1.19456 1.21878 1.21868 1.19614 0.91343 0.85417 1.41362 0.91277 1.42862 1.06215 1.00638 1.89187 1.20712 0.93435 0.84551 0.97159 1.20259 0.94719 0.90239 0.90932 0.93609 1.24202 1.05942 1.00171 0.99686 1.20389 1.02602 0.94898 0.99197 1.20310 0.98848 0.98883 0.98865 1.26099 1.07479 1.03176 0.98459 1.84503 1.44118 1.14642 1.18734 1.64792 1.27132 1.04302 1.27417 1.23369 0.95588 0.92543 0.97989 1.22459 0.98724 0.95198 0.98537 1.22419 0.97100 0.97788 0.99227 1.22757 0.91966 0.94998 0.97982 0.93960 0.78135 0.96565 0.95854 0.84071 0.81840 0.79251 0.89283 0.94030 0.88730 0.90554 0.90793 0.91147 0.95725 0.92266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -59.27 13.06 21.65 0.28 -58.99 16 2 C -0.07 -4.06 5.50 84.86 0.47 -3.59 16 3 Si 0.97 47.22 29.55 68.60 2.03 49.25 16 4 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 5 H -0.29 -14.07 7.11 99.48 0.71 -13.37 16 6 H -0.29 -14.03 7.11 99.48 0.71 -13.33 16 7 C -0.25 -14.29 9.99 84.03 0.84 -13.45 16 8 H 0.07 3.93 7.83 -2.91 -0.02 3.91 16 9 N -0.74 -39.64 4.58 -343.47 -1.57 -41.21 16 10 C 0.17 7.54 5.87 86.38 0.51 8.05 16 11 C 0.15 5.46 2.16 44.17 0.10 5.56 16 12 H 0.05 1.76 7.65 -2.39 -0.02 1.75 16 13 C -0.18 -5.47 4.13 24.59 0.10 -5.37 16 14 C -0.14 -3.57 10.03 21.22 0.21 -3.36 16 15 C -0.14 -2.84 10.18 21.21 0.22 -2.62 16 16 C -0.22 -4.31 11.23 66.72 0.75 -3.56 16 17 S 0.12 3.05 21.81 -56.49 -1.23 1.82 16 18 N -0.51 -18.18 4.98 -862.26 -4.29 -22.47 16 19 C 0.03 0.91 5.38 86.65 0.47 1.37 16 20 C -0.11 -2.71 7.06 31.80 0.22 -2.49 16 21 C -0.13 -3.79 6.93 31.47 0.22 -3.57 16 22 C 0.05 2.00 4.77 86.44 0.41 2.41 16 23 H 0.25 14.91 8.31 -92.71 -0.77 14.14 16 24 H 0.38 20.95 4.36 -92.70 -0.40 20.55 16 25 H 0.02 0.74 8.14 -2.39 -0.02 0.73 16 26 H 0.02 1.09 8.14 -2.39 -0.02 1.07 16 27 H 0.14 3.37 8.06 -2.91 -0.02 3.35 16 28 H 0.16 2.36 8.06 -2.91 -0.02 2.34 16 29 H 0.19 2.53 8.06 -2.91 -0.02 2.51 16 30 H 0.09 2.33 6.68 -2.38 -0.02 2.31 16 31 H 0.04 1.14 8.02 -2.39 -0.02 1.12 16 32 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 33 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 34 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 35 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 36 H 0.02 1.05 6.35 -2.39 -0.02 1.04 16 37 H 0.06 2.86 7.28 -2.39 -0.02 2.84 16 Total: -1.00 -65.81 308.02 0.37 -65.44 By element: Atomic # 1 Polarization: 26.14 SS G_CDS: 0.65 Total: 26.79 kcal Atomic # 6 Polarization: -25.13 SS G_CDS: 4.51 Total: -20.62 kcal Atomic # 7 Polarization: -117.09 SS G_CDS: -5.58 Total: -122.67 kcal Atomic # 14 Polarization: 47.22 SS G_CDS: 2.03 Total: 49.25 kcal Atomic # 16 Polarization: 3.05 SS G_CDS: -1.23 Total: 1.82 kcal Total: -65.81 0.37 -65.44 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309652812.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.196 kcal (2) G-P(sol) polarization free energy of solvation -65.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.437 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds