Wall clock time and date at job start Mon Mar 30 2020 05:00:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86802 * 119.99965 * 2 1 4 4 H 1.48498 * 109.47025 * 269.99669 * 3 2 1 5 5 H 1.48495 * 109.47277 * 29.99951 * 3 2 1 6 6 H 1.48496 * 109.47103 * 150.00062 * 3 2 1 7 7 C 1.38812 * 120.00153 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00074 * 0.02562 * 7 2 1 9 9 N 1.36939 * 120.00432 * 179.97438 * 7 2 1 10 10 C 1.46498 * 120.00324 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.47035 * 185.27499 * 10 9 7 12 12 H 1.09004 * 109.47521 * 305.32468 * 11 10 9 13 13 C 1.50704 * 109.47405 * 65.32417 * 11 10 9 14 14 C 1.33382 * 125.20217 * 260.00262 * 13 11 10 15 15 C 1.38425 * 114.91875 * 179.97438 * 14 13 11 16 16 C 1.33388 * 114.92119 * 359.97438 * 15 14 13 17 17 S 1.75885 * 109.59474 * 359.76075 * 16 15 14 18 18 N 1.46901 * 109.47187 * 185.32412 * 11 10 9 19 19 C 1.48538 * 110.99895 * 59.26640 * 18 11 10 20 20 C 1.54935 * 103.22537 * 159.72170 * 19 18 11 21 21 C 1.54591 * 102.92539 * 322.58440 * 20 19 18 22 22 C 1.47896 * 111.00176 * 176.66334 * 18 11 10 23 23 H 0.97003 * 119.99846 * 359.97438 * 1 2 3 24 24 H 0.97006 * 119.99413 * 0.02562 * 9 7 2 25 25 H 1.09000 * 109.47261 * 65.27380 * 10 9 7 26 26 H 1.08999 * 109.47074 * 305.27099 * 10 9 7 27 27 H 1.08001 * 122.54175 * 359.94714 * 14 13 11 28 28 H 1.08002 * 122.53653 * 180.02562 * 15 14 13 29 29 H 1.08002 * 125.20312 * 180.02562 * 16 15 14 30 30 H 1.08999 * 110.66867 * 278.15855 * 19 18 11 31 31 H 1.08998 * 110.66572 * 41.28694 * 19 18 11 32 32 H 1.09001 * 110.72099 * 204.22460 * 20 19 18 33 33 H 1.08995 * 110.72499 * 80.94815 * 20 19 18 34 34 H 1.08997 * 110.30936 * 263.04579 * 21 20 19 35 35 H 1.08998 * 110.30707 * 140.87058 * 21 20 19 36 36 H 1.09001 * 109.92105 * 333.50791 * 22 18 11 37 37 H 1.09005 * 109.92080 * 94.80590 * 22 18 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 1.4703 -2.1375 0.0005 9 7 3.3797 -1.2022 0.0000 10 6 4.1122 -2.4709 0.0000 11 6 5.6111 -2.1943 0.1320 12 1 5.9243 -1.5065 -0.6535 13 6 5.8919 -1.5798 1.4791 14 6 6.0754 -0.2785 1.7074 15 6 6.3196 0.0530 3.0290 16 6 6.3338 -0.9791 3.8739 17 16 6.0192 -2.4679 2.9919 18 7 6.3548 -3.4547 0.0042 19 6 6.0883 -4.0994 -1.3072 20 6 7.2923 -5.0588 -1.4817 21 6 8.4682 -4.2494 -0.8886 22 6 7.8137 -3.2161 0.0471 23 1 -0.4850 0.8401 0.0004 24 1 3.8647 -0.3621 -0.0004 25 1 3.9212 -3.0007 -0.9332 26 1 3.7802 -3.0821 0.8393 27 1 6.0370 0.4604 0.9207 28 1 6.4851 1.0703 3.3516 29 1 6.5072 -0.9104 4.9377 30 1 5.1525 -4.6576 -1.2785 31 1 6.0698 -3.3563 -2.1044 32 1 7.4648 -5.2733 -2.5364 33 1 7.1360 -5.9799 -0.9203 34 1 9.0190 -3.7452 -1.6827 35 1 9.1315 -4.9045 -0.3239 36 1 8.0354 -2.2072 -0.3008 37 1 8.1822 -3.3504 1.0642 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309652813.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:00:59 Heat of formation + Delta-G solvation = 57.173488 kcal Electronic energy + Delta-G solvation = -18420.549204 eV Core-core repulsion = 15710.963191 eV Total energy + Delta-G solvation = -2709.586013 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.32590 -37.34996 -35.15771 -32.85691 -30.90123 -29.35231 -28.76689 -26.80453 -24.09294 -22.65591 -21.69329 -20.68554 -20.44836 -18.96591 -17.61439 -16.96580 -16.04101 -15.45325 -15.20195 -14.39609 -14.18369 -13.86524 -13.53700 -12.93050 -12.84427 -12.58124 -12.46819 -12.38558 -12.13040 -11.70722 -11.40162 -11.30917 -11.20090 -11.08879 -10.82080 -10.71742 -10.56996 -10.37179 -10.12069 -9.57146 -8.88307 -8.39823 -8.30862 -8.06488 -7.20653 -5.74244 -3.09382 1.33177 1.99644 2.39977 3.06875 3.38551 3.41889 3.46174 3.96299 4.61157 4.61865 4.63437 4.88394 5.04709 5.29564 5.30812 5.43720 5.49670 5.56897 5.61551 5.64476 5.73009 5.77553 5.79199 5.81018 5.86577 5.99313 6.06842 6.14720 6.36772 6.51040 6.60463 6.67805 6.74511 6.95224 7.12981 8.01427 8.44291 9.23122 9.95548 10.15249 11.44184 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.017170 B = 0.007420 C = 0.005856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1630.336237 B = 3772.469202 C = 4780.087676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.006 3.994 3 Si 0.878 3.122 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.273 1.273 7 C -0.239 4.239 8 H 0.091 0.909 9 N -0.751 5.751 10 C 0.169 3.831 11 C 0.134 3.866 12 H 0.059 0.941 13 C -0.142 4.142 14 C -0.146 4.146 15 C -0.129 4.129 16 C -0.237 4.237 17 S 0.134 5.866 18 N -0.509 5.509 19 C 0.035 3.965 20 C -0.122 4.122 21 C -0.130 4.130 22 C 0.036 3.964 23 H 0.259 0.741 24 H 0.360 0.640 25 H 0.032 0.968 26 H 0.041 0.959 27 H 0.131 0.869 28 H 0.132 0.868 29 H 0.157 0.843 30 H 0.088 0.912 31 H 0.048 0.952 32 H 0.069 0.931 33 H 0.074 0.926 34 H 0.064 0.936 35 H 0.070 0.930 36 H 0.043 0.957 37 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.939 -6.450 1.714 20.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.190 4.190 3 Si 0.709 3.291 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.199 1.199 7 C -0.369 4.369 8 H 0.108 0.892 9 N -0.397 5.397 10 C 0.041 3.959 11 C 0.024 3.976 12 H 0.076 0.924 13 C -0.260 4.260 14 C -0.176 4.176 15 C -0.160 4.160 16 C -0.373 4.373 17 S 0.398 5.602 18 N -0.233 5.233 19 C -0.093 4.093 20 C -0.160 4.160 21 C -0.168 4.168 22 C -0.092 4.092 23 H 0.069 0.931 24 H 0.193 0.807 25 H 0.049 0.951 26 H 0.059 0.941 27 H 0.149 0.851 28 H 0.150 0.850 29 H 0.175 0.825 30 H 0.107 0.893 31 H 0.066 0.934 32 H 0.088 0.912 33 H 0.093 0.907 34 H 0.082 0.918 35 H 0.088 0.912 36 H 0.061 0.939 37 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 18.413 -8.381 2.577 20.394 hybrid contribution 0.768 3.541 -0.933 3.742 sum 19.181 -4.840 1.644 19.850 Atomic orbital electron populations 1.69697 1.05051 1.25734 1.57749 1.24627 0.95187 0.97054 1.02100 0.86621 0.79632 0.85199 0.77697 1.21208 1.21710 1.19904 1.19023 0.80382 0.94757 1.42751 0.89159 1.42612 1.04049 1.01919 1.91143 1.20635 0.86243 0.89657 0.99354 1.20588 0.96378 0.89715 0.90957 0.92375 1.24259 1.06954 0.96578 0.98206 1.20020 1.04864 0.95263 0.97461 1.20022 1.03535 0.99713 0.92723 1.25629 1.11524 0.96814 1.03306 1.84152 1.69254 1.08924 0.97900 1.64742 1.05091 1.21783 1.31734 1.23261 0.99335 0.96799 0.89859 1.22476 0.94271 0.98664 1.00623 1.22394 0.97977 0.97779 0.98661 1.22867 0.88238 0.97685 1.00420 0.93105 0.80677 0.95073 0.94146 0.85127 0.85010 0.82511 0.89330 0.93414 0.91202 0.90716 0.91772 0.91166 0.93859 0.90269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.82 13.97 55.49 0.78 -29.04 16 2 C 0.01 0.18 5.50 -17.43 -0.10 0.08 16 3 Si 0.88 22.48 27.74 -169.99 -4.71 17.77 16 4 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 5 H -0.29 -7.55 7.11 56.52 0.40 -7.14 16 6 H -0.27 -6.57 6.52 56.52 0.37 -6.21 16 7 C -0.24 -6.92 10.47 -15.06 -0.16 -7.08 16 8 H 0.09 2.79 8.06 -52.48 -0.42 2.37 16 9 N -0.75 -18.32 5.17 -59.91 -0.31 -18.63 16 10 C 0.17 3.42 5.60 -4.05 -0.02 3.39 16 11 C 0.13 2.23 1.69 -68.86 -0.12 2.12 16 12 H 0.06 0.98 7.96 -51.93 -0.41 0.56 16 13 C -0.14 -2.38 4.29 -36.00 -0.15 -2.54 16 14 C -0.15 -2.44 9.62 -41.21 -0.40 -2.84 16 15 C -0.13 -1.95 10.18 -41.21 -0.42 -2.37 16 16 C -0.24 -3.37 11.23 29.04 0.33 -3.04 16 17 S 0.13 2.04 23.08 -107.50 -2.48 -0.44 16 18 N -0.51 -7.14 4.88 -223.88 -1.09 -8.24 16 19 C 0.03 0.44 5.38 -1.90 -0.01 0.43 16 20 C -0.12 -1.20 7.06 -24.87 -0.18 -1.38 16 21 C -0.13 -1.25 6.93 -25.37 -0.18 -1.43 16 22 C 0.04 0.43 5.95 -2.75 -0.02 0.42 16 23 H 0.26 7.87 8.31 -40.82 -0.34 7.53 16 24 H 0.36 8.60 5.00 -40.82 -0.20 8.40 16 25 H 0.03 0.62 6.65 -51.93 -0.35 0.28 16 26 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 27 H 0.13 2.15 8.06 -52.49 -0.42 1.73 16 28 H 0.13 1.71 8.06 -52.49 -0.42 1.29 16 29 H 0.16 1.79 8.06 -52.49 -0.42 1.37 16 30 H 0.09 1.14 7.53 -51.93 -0.39 0.75 16 31 H 0.05 0.61 8.01 -51.93 -0.42 0.19 16 32 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.04 0.54 7.68 -51.93 -0.40 0.14 16 37 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 311.69 15.07 4.70 4.70 Total: -1.00 -31.78 311.69 -10.11 -41.89 By element: Atomic # 1 Polarization: 11.79 SS G_CDS: -5.56 Total: 6.22 kcal Atomic # 6 Polarization: -12.82 SS G_CDS: -1.41 Total: -14.23 kcal Atomic # 7 Polarization: -55.28 SS G_CDS: -0.63 Total: -55.91 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -4.71 Total: 17.77 kcal Atomic # 16 Polarization: 2.04 SS G_CDS: -2.48 Total: -0.44 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -31.78 -10.11 -41.89 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309652813.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.060 kcal (2) G-P(sol) polarization free energy of solvation -31.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.887 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds