Wall clock time and date at job start Mon Mar 30 2020 05:00:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86802 * 119.99965 * 2 1 4 4 H 1.48498 * 109.47025 * 269.99669 * 3 2 1 5 5 H 1.48495 * 109.47277 * 29.99951 * 3 2 1 6 6 H 1.48496 * 109.47103 * 150.00062 * 3 2 1 7 7 C 1.38812 * 120.00153 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00074 * 0.02562 * 7 2 1 9 9 N 1.36939 * 120.00432 * 179.97438 * 7 2 1 10 10 C 1.46498 * 120.00324 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.47035 * 185.27499 * 10 9 7 12 12 H 1.09004 * 109.47521 * 305.32468 * 11 10 9 13 13 C 1.50704 * 109.47405 * 65.32417 * 11 10 9 14 14 C 1.33382 * 125.20217 * 260.00262 * 13 11 10 15 15 C 1.38425 * 114.91875 * 179.97438 * 14 13 11 16 16 C 1.33388 * 114.92119 * 359.97438 * 15 14 13 17 17 S 1.75885 * 109.59474 * 359.76075 * 16 15 14 18 18 N 1.46901 * 109.47187 * 185.32412 * 11 10 9 19 19 C 1.48538 * 110.99895 * 59.26640 * 18 11 10 20 20 C 1.54935 * 103.22537 * 159.72170 * 19 18 11 21 21 C 1.54591 * 102.92539 * 322.58440 * 20 19 18 22 22 C 1.47896 * 111.00176 * 176.66334 * 18 11 10 23 23 H 0.97003 * 119.99846 * 359.97438 * 1 2 3 24 24 H 0.97006 * 119.99413 * 0.02562 * 9 7 2 25 25 H 1.09000 * 109.47261 * 65.27380 * 10 9 7 26 26 H 1.08999 * 109.47074 * 305.27099 * 10 9 7 27 27 H 1.08001 * 122.54175 * 359.94714 * 14 13 11 28 28 H 1.08002 * 122.53653 * 180.02562 * 15 14 13 29 29 H 1.08002 * 125.20312 * 180.02562 * 16 15 14 30 30 H 1.08999 * 110.66867 * 278.15855 * 19 18 11 31 31 H 1.08998 * 110.66572 * 41.28694 * 19 18 11 32 32 H 1.09001 * 110.72099 * 204.22460 * 20 19 18 33 33 H 1.08995 * 110.72499 * 80.94815 * 20 19 18 34 34 H 1.08997 * 110.30936 * 263.04579 * 21 20 19 35 35 H 1.08998 * 110.30707 * 140.87058 * 21 20 19 36 36 H 1.09001 * 109.92105 * 333.50791 * 22 18 11 37 37 H 1.09005 * 109.92080 * 94.80590 * 22 18 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 1.4703 -2.1375 0.0005 9 7 3.3797 -1.2022 0.0000 10 6 4.1122 -2.4709 0.0000 11 6 5.6111 -2.1943 0.1320 12 1 5.9243 -1.5065 -0.6535 13 6 5.8919 -1.5798 1.4791 14 6 6.0754 -0.2785 1.7074 15 6 6.3196 0.0530 3.0290 16 6 6.3338 -0.9791 3.8739 17 16 6.0192 -2.4679 2.9919 18 7 6.3548 -3.4547 0.0042 19 6 6.0883 -4.0994 -1.3072 20 6 7.2923 -5.0588 -1.4817 21 6 8.4682 -4.2494 -0.8886 22 6 7.8137 -3.2161 0.0471 23 1 -0.4850 0.8401 0.0004 24 1 3.8647 -0.3621 -0.0004 25 1 3.9212 -3.0007 -0.9332 26 1 3.7802 -3.0821 0.8393 27 1 6.0370 0.4604 0.9207 28 1 6.4851 1.0703 3.3516 29 1 6.5072 -0.9104 4.9377 30 1 5.1525 -4.6576 -1.2785 31 1 6.0698 -3.3563 -2.1044 32 1 7.4648 -5.2733 -2.5364 33 1 7.1360 -5.9799 -0.9203 34 1 9.0190 -3.7452 -1.6827 35 1 9.1315 -4.9045 -0.3239 36 1 8.0354 -2.2072 -0.3008 37 1 8.1822 -3.3504 1.0642 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309652813.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:00:58 Heat of formation + Delta-G solvation = 36.486903 kcal Electronic energy + Delta-G solvation = -18421.446242 eV Core-core repulsion = 15710.963191 eV Total energy + Delta-G solvation = -2710.483050 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.45144 -38.48123 -36.87850 -34.49455 -32.81044 -30.41021 -29.83593 -28.33437 -25.57915 -24.22052 -23.11496 -21.72195 -21.59940 -20.17520 -19.69245 -18.12517 -17.20602 -16.68538 -16.40572 -16.24006 -15.78409 -15.14618 -14.84575 -14.76486 -13.97711 -13.88485 -13.75416 -13.58705 -13.49073 -13.22433 -12.93612 -12.63958 -12.44619 -12.27964 -12.18363 -12.02168 -11.96543 -11.81424 -11.55604 -11.39241 -11.02615 -9.52711 -9.49532 -9.36423 -9.23264 -8.05068 -5.38869 0.13726 0.81414 1.22469 1.33669 1.37292 1.44857 1.87281 2.45601 2.80495 3.25653 3.51965 3.72843 3.85872 3.92754 4.09069 4.19656 4.25552 4.26137 4.37374 4.61361 4.63798 4.68272 4.73614 4.92174 4.94123 5.00275 5.02846 5.08106 5.19397 5.22087 5.33795 5.42077 5.57013 5.70585 5.91619 5.96963 6.18255 7.03881 7.78173 7.99042 9.16358 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.017170 B = 0.007420 C = 0.005856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1630.336237 B = 3772.469202 C = 4780.087676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.982 5.982 2 C -0.059 4.059 3 Si 0.947 3.053 4 H -0.277 1.277 5 H -0.294 1.294 6 H -0.249 1.249 7 C -0.232 4.232 8 H 0.056 0.944 9 N -0.751 5.751 10 C 0.171 3.829 11 C 0.148 3.852 12 H 0.056 0.944 13 C -0.165 4.165 14 C -0.157 4.157 15 C -0.144 4.144 16 C -0.226 4.226 17 S 0.129 5.871 18 N -0.515 5.515 19 C 0.028 3.972 20 C -0.114 4.114 21 C -0.123 4.123 22 C 0.036 3.964 23 H 0.258 0.742 24 H 0.366 0.634 25 H 0.034 0.966 26 H 0.024 0.976 27 H 0.130 0.870 28 H 0.154 0.846 29 H 0.187 0.813 30 H 0.078 0.922 31 H 0.044 0.956 32 H 0.088 0.912 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.085 0.915 36 H 0.039 0.961 37 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.641 -6.012 2.078 22.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.632 5.632 2 C -0.251 4.251 3 Si 0.774 3.226 4 H -0.203 1.203 5 H -0.221 1.221 6 H -0.173 1.173 7 C -0.363 4.363 8 H 0.074 0.926 9 N -0.397 5.397 10 C 0.044 3.956 11 C 0.037 3.963 12 H 0.074 0.926 13 C -0.283 4.283 14 C -0.188 4.188 15 C -0.174 4.174 16 C -0.362 4.362 17 S 0.393 5.607 18 N -0.240 5.240 19 C -0.100 4.100 20 C -0.152 4.152 21 C -0.161 4.161 22 C -0.092 4.092 23 H 0.067 0.933 24 H 0.199 0.801 25 H 0.051 0.949 26 H 0.042 0.958 27 H 0.148 0.852 28 H 0.172 0.828 29 H 0.204 0.796 30 H 0.096 0.904 31 H 0.062 0.938 32 H 0.106 0.894 33 H 0.096 0.904 34 H 0.095 0.905 35 H 0.103 0.897 36 H 0.057 0.943 37 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 21.168 -7.976 2.938 22.811 hybrid contribution -0.091 3.286 -1.018 3.441 sum 21.077 -4.690 1.919 21.678 Atomic orbital electron populations 1.69878 1.07046 1.26679 1.59620 1.25441 0.96073 1.01050 1.02499 0.85514 0.79037 0.79818 0.78205 1.20268 1.22087 1.17349 1.18974 0.82370 0.93525 1.41439 0.92597 1.42546 1.02539 1.03676 1.90910 1.20666 0.88704 0.87670 0.98560 1.20276 0.93843 0.90883 0.91298 0.92602 1.24331 1.08213 0.97052 0.98659 1.20265 1.04870 0.95231 0.98428 1.20275 1.03901 1.01122 0.92124 1.26014 1.09835 0.95722 1.04625 1.84138 1.69222 1.09768 0.97578 1.64730 1.06275 1.20307 1.32693 1.23343 1.00339 0.97203 0.89092 1.22455 0.92846 0.97959 1.01931 1.22391 0.97873 0.97281 0.98598 1.22910 0.86865 0.98356 1.01075 0.93282 0.80100 0.94854 0.95796 0.85190 0.82817 0.79571 0.90402 0.93776 0.89363 0.90436 0.90517 0.89663 0.94300 0.90396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -64.09 13.97 21.65 0.30 -63.79 16 2 C -0.06 -3.56 5.50 84.86 0.47 -3.10 16 3 Si 0.95 46.30 27.74 68.60 1.90 48.21 16 4 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 5 H -0.29 -14.51 7.11 99.48 0.71 -13.80 16 6 H -0.25 -11.05 6.52 99.48 0.65 -10.40 16 7 C -0.23 -13.69 10.47 84.03 0.88 -12.81 16 8 H 0.06 3.61 8.06 -2.91 -0.02 3.59 16 9 N -0.75 -36.58 5.17 -343.46 -1.78 -38.35 16 10 C 0.17 6.98 5.60 86.38 0.48 7.46 16 11 C 0.15 4.83 1.69 44.17 0.07 4.90 16 12 H 0.06 1.83 7.96 -2.38 -0.02 1.82 16 13 C -0.16 -5.34 4.29 24.59 0.11 -5.23 16 14 C -0.16 -4.98 9.62 21.22 0.20 -4.78 16 15 C -0.14 -3.98 10.18 21.22 0.22 -3.76 16 16 C -0.23 -5.83 11.23 66.72 0.75 -5.08 16 17 S 0.13 3.76 23.08 -56.49 -1.30 2.46 16 18 N -0.52 -13.99 4.88 -862.21 -4.21 -18.20 16 19 C 0.03 0.66 5.38 86.65 0.47 1.13 16 20 C -0.11 -1.98 7.06 31.80 0.22 -1.76 16 21 C -0.12 -2.03 6.93 31.47 0.22 -1.82 16 22 C 0.04 0.79 5.95 86.45 0.51 1.31 16 23 H 0.26 16.02 8.31 -92.71 -0.77 15.25 16 24 H 0.37 17.02 5.00 -92.70 -0.46 16.56 16 25 H 0.03 1.35 6.65 -2.39 -0.02 1.34 16 26 H 0.02 1.06 8.14 -2.39 -0.02 1.04 16 27 H 0.13 4.05 8.06 -2.91 -0.02 4.02 16 28 H 0.15 3.49 8.06 -2.91 -0.02 3.47 16 29 H 0.19 3.58 8.06 -2.91 -0.02 3.55 16 30 H 0.08 2.01 7.53 -2.39 -0.02 1.99 16 31 H 0.04 1.09 8.01 -2.39 -0.02 1.07 16 32 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 34 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 36 H 0.04 0.90 7.68 -2.39 -0.02 0.88 16 37 H 0.08 1.75 8.14 -2.38 -0.02 1.73 16 Total: -1.00 -68.76 311.69 0.05 -68.72 By element: Atomic # 1 Polarization: 23.96 SS G_CDS: 0.53 Total: 24.49 kcal Atomic # 6 Polarization: -28.13 SS G_CDS: 4.60 Total: -23.53 kcal Atomic # 7 Polarization: -114.66 SS G_CDS: -5.68 Total: -120.34 kcal Atomic # 14 Polarization: 46.30 SS G_CDS: 1.90 Total: 48.21 kcal Atomic # 16 Polarization: 3.76 SS G_CDS: -1.30 Total: 2.46 kcal Total: -68.76 0.05 -68.72 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309652813.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.204 kcal (2) G-P(sol) polarization free energy of solvation -68.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.717 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds