Wall clock time and date at job start Mon Mar 30 2020 05:19:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47159 * 2 1 4 4 H 1.08999 * 109.47088 * 305.25972 * 3 2 1 5 5 C 1.50701 * 109.47052 * 185.25580 * 3 2 1 6 6 H 1.07994 * 120.00265 * 245.24526 * 5 3 2 7 7 C 1.37879 * 119.99834 * 64.97635 * 5 3 2 8 8 N 1.31516 * 119.99906 * 6.91463 * 7 5 3 9 9 Si 1.86800 * 120.00123 * 186.92034 * 7 5 3 10 10 H 1.48502 * 109.47166 * 93.77000 * 9 7 5 11 11 H 1.48492 * 109.47119 * 213.76827 * 9 7 5 12 12 H 1.48500 * 109.46982 * 333.77251 * 9 7 5 13 13 N 1.46502 * 109.47527 * 65.25762 * 3 2 1 14 14 C 1.34780 * 120.00046 * 275.00158 * 13 3 2 15 15 O 1.21573 * 119.99821 * 359.97438 * 14 13 3 16 16 C 1.47703 * 120.00110 * 179.97438 * 14 13 3 17 17 C 1.39608 * 120.13145 * 359.72051 * 16 14 13 18 18 C 1.38511 * 119.79796 * 179.79199 * 17 16 14 19 19 N 1.39853 * 119.96337 * 180.22967 * 18 17 16 20 20 C 1.39058 * 120.06708 * 0.48842 * 18 17 16 21 21 C 1.38117 * 120.26368 * 359.74444 * 20 18 17 22 22 C 1.38327 * 120.20333 * 0.02562 * 21 20 18 23 23 F 1.35098 * 120.03385 * 179.97438 * 22 21 20 24 24 H 1.08998 * 109.47576 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.46948 * 300.00175 * 1 2 3 26 26 H 1.08999 * 109.47027 * 59.99888 * 1 2 3 27 27 H 1.08990 * 109.46974 * 239.99716 * 2 1 3 28 28 H 1.09005 * 109.46673 * 119.99521 * 2 1 3 29 29 H 0.97003 * 120.00283 * 180.02562 * 8 7 5 30 30 H 0.96996 * 120.00151 * 94.99722 * 13 3 2 31 31 H 1.08000 * 120.09830 * 359.97438 * 17 16 14 32 32 H 0.97012 * 119.99551 * 180.25340 * 19 18 17 33 33 H 0.97000 * 120.00701 * 0.25818 * 19 18 17 34 34 H 1.08004 * 119.86752 * 179.72241 * 20 18 17 35 35 H 1.08002 * 119.89728 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6018 1.9828 -0.8391 5 6 3.5414 1.4444 -0.1302 6 1 4.1533 1.8106 0.6809 7 6 4.1341 0.9735 -1.2826 8 7 3.3917 0.6503 -2.3190 9 14 5.9913 0.7945 -1.3718 10 1 6.3734 -0.5916 -1.0004 11 1 6.4503 1.0808 -2.7547 12 1 6.6266 1.7520 -0.4311 13 7 1.6578 2.0957 1.2544 14 6 0.4410 2.6625 1.3756 15 8 -0.3392 2.6320 0.4437 16 6 0.0554 3.3205 2.6404 17 6 0.9471 3.3520 3.7142 18 6 0.5800 3.9747 4.8957 19 7 1.4723 4.0124 5.9720 20 6 -0.6769 4.5577 5.0147 21 6 -1.5629 4.5239 3.9557 22 6 -1.2060 3.9091 2.7691 23 9 -2.0756 3.8776 1.7357 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 3.8086 0.3186 -3.1296 30 1 2.2804 2.1202 1.9978 31 1 1.9212 2.8947 3.6229 32 1 1.2143 4.4453 6.8010 33 1 2.3491 3.6059 5.8896 34 1 -0.9615 5.0385 5.9390 35 1 -2.5374 4.9790 4.0545 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000310201879.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:19:08 Heat of formation + Delta-G solvation = -62.745523 kcal Electronic energy + Delta-G solvation = -20127.716121 eV Core-core repulsion = 16846.716854 eV Total energy + Delta-G solvation = -3280.999267 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -48.35237 -39.67745 -38.29465 -35.05287 -34.20235 -32.54166 -31.59959 -30.33922 -28.19561 -26.95941 -24.12002 -23.02183 -22.07888 -20.40725 -19.38670 -18.06569 -17.29495 -17.04278 -16.27632 -15.44746 -15.30076 -15.18325 -14.90175 -14.30788 -14.26626 -14.00460 -13.16320 -12.96452 -12.69687 -12.68327 -12.61157 -12.00145 -11.45967 -11.33162 -11.24745 -11.00040 -10.78450 -10.34733 -10.32250 -10.18331 -9.65781 -9.07181 -9.06664 -9.01409 -8.48579 -7.82150 -7.52572 -6.13104 -4.19820 0.91888 1.37537 3.24556 3.29485 3.31950 3.33472 3.65379 4.02621 4.12433 4.37208 4.51309 4.70419 4.88003 5.19970 5.26088 5.42529 5.65232 5.77269 6.05311 6.15063 6.23652 6.39598 6.45073 6.64897 6.76603 7.03979 7.20784 7.28303 7.36030 7.44148 7.57084 7.62622 7.73013 7.86758 8.09611 8.66399 8.79720 9.13022 9.46388 10.94835 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.022795 B = 0.005513 C = 0.004724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1228.070852 B = 5078.016825 C = 5925.329894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.120 4.120 3 C 0.268 3.732 4 H 0.057 0.943 5 C -0.536 4.536 6 H 0.061 0.939 7 C 0.069 3.931 8 N -0.879 5.879 9 Si 0.899 3.101 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 N -0.699 5.699 14 C 0.539 3.461 15 O -0.529 6.529 16 C -0.110 4.110 17 C -0.140 4.140 18 C 0.196 3.804 19 N -0.878 5.878 20 C -0.155 4.155 21 C -0.118 4.118 22 C 0.095 3.905 23 F -0.122 7.122 24 H 0.023 0.977 25 H 0.040 0.960 26 H 0.052 0.948 27 H 0.083 0.917 28 H 0.033 0.967 29 H 0.265 0.735 30 H 0.386 0.614 31 H 0.135 0.865 32 H 0.398 0.602 33 H 0.400 0.600 34 H 0.130 0.870 35 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.419 5.872 16.561 18.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.159 4.159 3 C 0.167 3.833 4 H 0.075 0.925 5 C -0.574 4.574 6 H 0.079 0.921 7 C -0.135 4.135 8 N -0.516 5.516 9 Si 0.726 3.274 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.199 1.199 13 N -0.348 5.348 14 C 0.323 3.677 15 O -0.407 6.407 16 C -0.115 4.115 17 C -0.163 4.163 18 C 0.092 3.908 19 N -0.419 5.419 20 C -0.178 4.178 21 C -0.138 4.138 22 C 0.073 3.927 23 F -0.100 7.100 24 H 0.042 0.958 25 H 0.060 0.940 26 H 0.071 0.929 27 H 0.101 0.899 28 H 0.052 0.948 29 H 0.074 0.926 30 H 0.219 0.781 31 H 0.153 0.847 32 H 0.226 0.774 33 H 0.229 0.771 34 H 0.147 0.853 35 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -4.999 5.747 15.563 17.327 hybrid contribution 1.459 -0.135 0.457 1.534 sum -3.541 5.612 16.020 17.340 Atomic orbital electron populations 1.21850 0.98002 0.98186 1.01604 1.21852 0.92987 0.99743 1.01300 1.18842 0.94451 0.89049 0.80991 0.92515 1.21179 0.90522 1.43749 1.01991 0.92133 1.24887 0.98450 0.95090 0.95096 1.69974 1.35359 1.43042 1.03253 0.86488 0.85037 0.78416 0.77462 1.20560 1.21114 1.19880 1.46412 1.14124 1.55654 1.18563 1.17957 0.83363 0.79823 0.86529 1.90811 1.50944 1.59208 1.39731 1.20239 0.93893 1.01290 0.96040 1.20686 1.00406 1.03656 0.91598 1.17623 0.90155 0.94860 0.88197 1.42419 1.17969 1.67033 1.14442 1.20480 0.92861 1.04820 0.99628 1.20832 1.00773 1.00516 0.91660 1.17478 0.87845 1.01735 0.85668 1.91560 1.67432 1.94420 1.56582 0.95759 0.94049 0.92902 0.89873 0.94799 0.92555 0.78052 0.84724 0.77444 0.77130 0.85253 0.84491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.18 8.52 37.16 0.32 -2.87 16 2 C -0.12 -2.92 5.49 -26.73 -0.15 -3.06 16 3 C 0.27 6.81 2.11 -69.08 -0.15 6.66 16 4 H 0.06 1.69 7.55 -51.93 -0.39 1.29 16 5 C -0.54 -14.11 8.67 -34.44 -0.30 -14.41 16 6 H 0.06 1.52 7.73 -52.49 -0.41 1.11 16 7 C 0.07 1.84 5.20 -17.82 -0.09 1.75 16 8 N -0.88 -24.91 12.00 55.43 0.67 -24.25 16 9 Si 0.90 20.52 29.54 -169.99 -5.02 15.49 16 10 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 11 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 12 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 13 N -0.70 -14.81 4.97 -55.92 -0.28 -15.09 16 14 C 0.54 11.46 6.35 -12.39 -0.08 11.38 16 15 O -0.53 -13.17 12.47 5.30 0.07 -13.10 16 16 C -0.11 -1.87 5.88 -104.94 -0.62 -2.49 16 17 C -0.14 -1.87 9.38 -38.97 -0.37 -2.23 16 18 C 0.20 2.11 6.75 -83.79 -0.57 1.54 16 19 N -0.88 -6.34 9.10 32.40 0.29 -6.05 16 20 C -0.15 -1.58 9.88 -39.32 -0.39 -1.96 16 21 C -0.12 -1.43 10.00 -39.59 -0.40 -1.83 16 22 C 0.10 1.55 7.28 -38.97 -0.28 1.27 16 23 F -0.12 -2.31 15.54 2.25 0.03 -2.28 16 24 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 25 H 0.04 0.94 5.64 -51.93 -0.29 0.64 16 26 H 0.05 1.29 7.86 -51.93 -0.41 0.89 16 27 H 0.08 2.21 6.65 -51.93 -0.35 1.87 16 28 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 30 H 0.39 7.00 6.56 -40.82 -0.27 6.73 16 31 H 0.14 1.61 6.40 -52.49 -0.34 1.27 16 32 H 0.40 1.97 8.84 -40.81 -0.36 1.61 16 33 H 0.40 2.45 8.84 -40.82 -0.36 2.08 16 34 H 0.13 0.91 8.06 -52.48 -0.42 0.49 16 35 H 0.14 1.31 8.06 -52.49 -0.42 0.89 16 LS Contribution 297.23 15.07 4.48 4.48 Total: -1.00 -31.95 297.23 -6.82 -38.76 By element: Atomic # 1 Polarization: 12.28 SS G_CDS: -4.00 Total: 8.28 kcal Atomic # 6 Polarization: -3.19 SS G_CDS: -3.06 Total: -6.25 kcal Atomic # 7 Polarization: -46.07 SS G_CDS: 0.68 Total: -45.38 kcal Atomic # 8 Polarization: -13.17 SS G_CDS: 0.07 Total: -13.10 kcal Atomic # 9 Polarization: -2.31 SS G_CDS: 0.03 Total: -2.28 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -31.95 -6.82 -38.76 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310201879.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.982 kcal (2) G-P(sol) polarization free energy of solvation -31.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds