Wall clock time and date at job start Mon Mar 30 2020 05:19:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47159 * 2 1 4 4 H 1.08999 * 109.47088 * 305.25972 * 3 2 1 5 5 C 1.50701 * 109.47052 * 185.25580 * 3 2 1 6 6 H 1.07994 * 120.00265 * 245.24526 * 5 3 2 7 7 C 1.37879 * 119.99834 * 64.97635 * 5 3 2 8 8 N 1.31516 * 119.99906 * 6.91463 * 7 5 3 9 9 Si 1.86800 * 120.00123 * 186.92034 * 7 5 3 10 10 H 1.48502 * 109.47166 * 93.77000 * 9 7 5 11 11 H 1.48492 * 109.47119 * 213.76827 * 9 7 5 12 12 H 1.48500 * 109.46982 * 333.77251 * 9 7 5 13 13 N 1.46502 * 109.47527 * 65.25762 * 3 2 1 14 14 C 1.34780 * 120.00046 * 275.00158 * 13 3 2 15 15 O 1.21573 * 119.99821 * 359.97438 * 14 13 3 16 16 C 1.47703 * 120.00110 * 179.97438 * 14 13 3 17 17 C 1.39608 * 120.13145 * 359.72051 * 16 14 13 18 18 C 1.38511 * 119.79796 * 179.79199 * 17 16 14 19 19 N 1.39853 * 119.96337 * 180.22967 * 18 17 16 20 20 C 1.39058 * 120.06708 * 0.48842 * 18 17 16 21 21 C 1.38117 * 120.26368 * 359.74444 * 20 18 17 22 22 C 1.38327 * 120.20333 * 0.02562 * 21 20 18 23 23 F 1.35098 * 120.03385 * 179.97438 * 22 21 20 24 24 H 1.08998 * 109.47576 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.46948 * 300.00175 * 1 2 3 26 26 H 1.08999 * 109.47027 * 59.99888 * 1 2 3 27 27 H 1.08990 * 109.46974 * 239.99716 * 2 1 3 28 28 H 1.09005 * 109.46673 * 119.99521 * 2 1 3 29 29 H 0.97003 * 120.00283 * 180.02562 * 8 7 5 30 30 H 0.96996 * 120.00151 * 94.99722 * 13 3 2 31 31 H 1.08000 * 120.09830 * 359.97438 * 17 16 14 32 32 H 0.97012 * 119.99551 * 180.25340 * 19 18 17 33 33 H 0.97000 * 120.00701 * 0.25818 * 19 18 17 34 34 H 1.08004 * 119.86752 * 179.72241 * 20 18 17 35 35 H 1.08002 * 119.89728 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6018 1.9828 -0.8391 5 6 3.5414 1.4444 -0.1302 6 1 4.1533 1.8106 0.6809 7 6 4.1341 0.9735 -1.2826 8 7 3.3917 0.6503 -2.3190 9 14 5.9913 0.7945 -1.3718 10 1 6.3734 -0.5916 -1.0004 11 1 6.4503 1.0808 -2.7547 12 1 6.6266 1.7520 -0.4311 13 7 1.6578 2.0957 1.2544 14 6 0.4410 2.6625 1.3756 15 8 -0.3392 2.6320 0.4437 16 6 0.0554 3.3205 2.6404 17 6 0.9471 3.3520 3.7142 18 6 0.5800 3.9747 4.8957 19 7 1.4723 4.0124 5.9720 20 6 -0.6769 4.5577 5.0147 21 6 -1.5629 4.5239 3.9557 22 6 -1.2060 3.9091 2.7691 23 9 -2.0756 3.8776 1.7357 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 3.8086 0.3186 -3.1296 30 1 2.2804 2.1202 1.9978 31 1 1.9212 2.8947 3.6229 32 1 1.2143 4.4453 6.8010 33 1 2.3491 3.6059 5.8896 34 1 -0.9615 5.0385 5.9390 35 1 -2.5374 4.9790 4.0545 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000310201879.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:19:07 Heat of formation + Delta-G solvation = -85.866798 kcal Electronic energy + Delta-G solvation = -20128.718735 eV Core-core repulsion = 16846.716854 eV Total energy + Delta-G solvation = -3282.001881 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.63322 -41.05817 -39.60578 -36.93521 -35.11351 -34.38177 -33.27368 -31.79217 -29.12249 -28.91701 -25.56614 -24.69721 -23.27140 -21.98194 -21.21111 -19.51495 -18.30417 -18.25652 -17.78131 -17.11698 -16.66715 -16.63078 -16.16146 -15.99640 -15.69218 -15.31957 -14.60910 -14.55545 -14.05060 -13.80800 -13.73894 -13.65846 -13.43999 -13.27224 -12.90639 -12.64054 -12.34673 -12.16289 -12.09395 -11.65007 -11.29141 -11.09109 -10.73212 -10.54448 -10.14125 -9.65392 -8.39837 -8.18370 -6.33403 -0.18642 0.37452 1.45203 1.45865 1.56661 2.00479 2.33474 2.55856 2.83610 2.97303 3.13316 3.44771 3.72921 3.83199 4.24799 4.32890 4.44156 4.51155 4.67793 4.71534 4.80863 5.03544 5.12449 5.17438 5.22492 5.24003 5.40229 5.50530 5.59596 5.72327 5.77461 5.90440 6.06301 6.54684 6.74507 6.92937 7.05598 7.32212 7.52338 8.90349 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.022795 B = 0.005513 C = 0.004724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1228.070852 B = 5078.016825 C = 5925.329894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.111 4.111 3 C 0.275 3.725 4 H 0.000 1.000 5 C -0.548 4.548 6 H 0.075 0.925 7 C 0.016 3.984 8 N -0.918 5.918 9 Si 0.972 3.028 10 H -0.271 1.271 11 H -0.289 1.289 12 H -0.261 1.261 13 N -0.694 5.694 14 C 0.534 3.466 15 O -0.577 6.577 16 C -0.136 4.136 17 C -0.146 4.146 18 C 0.209 3.791 19 N -0.859 5.859 20 C -0.137 4.137 21 C -0.106 4.106 22 C 0.054 3.946 23 F -0.150 7.150 24 H 0.050 0.950 25 H 0.040 0.960 26 H 0.024 0.976 27 H 0.057 0.943 28 H 0.050 0.950 29 H 0.265 0.735 30 H 0.402 0.598 31 H 0.145 0.855 32 H 0.414 0.586 33 H 0.409 0.591 34 H 0.175 0.825 35 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.182 6.618 20.515 21.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.151 4.151 3 C 0.172 3.828 4 H 0.018 0.982 5 C -0.586 4.586 6 H 0.093 0.907 7 C -0.185 4.185 8 N -0.556 5.556 9 Si 0.796 3.204 10 H -0.197 1.197 11 H -0.215 1.215 12 H -0.185 1.185 13 N -0.343 5.343 14 C 0.321 3.679 15 O -0.459 6.459 16 C -0.141 4.141 17 C -0.170 4.170 18 C 0.102 3.898 19 N -0.400 5.400 20 C -0.159 4.159 21 C -0.126 4.126 22 C 0.032 3.968 23 F -0.128 7.128 24 H 0.069 0.931 25 H 0.059 0.941 26 H 0.043 0.957 27 H 0.075 0.925 28 H 0.069 0.931 29 H 0.074 0.926 30 H 0.239 0.761 31 H 0.162 0.838 32 H 0.245 0.755 33 H 0.238 0.762 34 H 0.192 0.808 35 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -3.727 6.509 19.608 20.994 hybrid contribution 1.053 -0.285 -0.624 1.257 sum -2.674 6.224 18.984 20.157 Atomic orbital electron populations 1.21684 0.97054 0.99305 1.00189 1.21699 0.93724 0.98970 1.00664 1.18444 0.94114 0.89121 0.81123 0.98175 1.21530 0.90986 1.43574 1.02509 0.90737 1.25816 1.03432 0.94610 0.94605 1.70137 1.37543 1.44007 1.03903 0.85345 0.78885 0.78838 0.77325 1.19671 1.21470 1.18473 1.46132 1.14839 1.55635 1.17707 1.18662 0.82476 0.78998 0.87725 1.90773 1.52190 1.60961 1.41955 1.19911 0.95558 1.03544 0.95049 1.20729 1.00175 1.04393 0.91681 1.17680 0.90874 0.93237 0.87961 1.42419 1.17653 1.65975 1.13919 1.20978 0.91689 1.02921 1.00330 1.21136 1.02263 0.99004 0.90160 1.17975 0.87725 1.04329 0.86763 1.91479 1.68252 1.94900 1.58211 0.93143 0.94095 0.95708 0.92456 0.93145 0.92608 0.76145 0.83785 0.75516 0.76153 0.80805 0.81853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.95 8.52 71.98 0.61 -5.34 16 2 C -0.11 -5.62 5.49 30.59 0.17 -5.45 16 3 C 0.28 14.60 2.11 44.25 0.09 14.70 16 4 H 0.00 0.02 7.55 -2.39 -0.02 0.00 16 5 C -0.55 -29.25 8.67 25.60 0.22 -29.03 16 6 H 0.07 3.67 7.73 -2.91 -0.02 3.65 16 7 C 0.02 0.85 5.20 84.65 0.44 1.29 16 8 N -0.92 -53.88 12.00 21.45 0.26 -53.63 16 9 Si 0.97 42.09 29.54 68.60 2.03 44.12 16 10 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 11 H -0.29 -12.58 7.11 99.48 0.71 -11.87 16 12 H -0.26 -10.65 7.11 99.48 0.71 -9.94 16 13 N -0.69 -30.31 4.97 -449.10 -2.23 -32.54 16 14 C 0.53 23.82 6.35 86.74 0.55 24.37 16 15 O -0.58 -30.90 12.47 -3.94 -0.05 -30.95 16 16 C -0.14 -4.69 5.88 -20.07 -0.12 -4.81 16 17 C -0.15 -3.63 9.38 22.67 0.21 -3.41 16 18 C 0.21 3.67 6.75 38.12 0.26 3.92 16 19 N -0.86 -8.16 9.10 -51.41 -0.47 -8.62 16 20 C -0.14 -2.13 9.88 22.44 0.22 -1.91 16 21 C -0.11 -2.30 10.00 22.26 0.22 -2.07 16 22 C 0.05 1.79 7.28 22.67 0.17 1.95 16 23 F -0.15 -6.02 15.54 44.97 0.70 -5.32 16 24 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 25 H 0.04 1.93 5.64 -2.39 -0.01 1.91 16 26 H 0.02 1.27 7.86 -2.39 -0.02 1.25 16 27 H 0.06 3.18 6.65 -2.39 -0.02 3.16 16 28 H 0.05 2.32 8.14 -2.38 -0.02 2.31 16 29 H 0.26 14.70 8.31 -92.71 -0.77 13.93 16 30 H 0.40 14.58 6.56 -92.71 -0.61 13.97 16 31 H 0.14 3.15 6.40 -2.91 -0.02 3.13 16 32 H 0.41 1.72 8.84 -92.70 -0.82 0.90 16 33 H 0.41 3.12 8.84 -92.71 -0.82 2.30 16 34 H 0.17 1.24 8.06 -2.91 -0.02 1.22 16 35 H 0.16 2.59 8.06 -2.91 -0.02 2.57 16 Total: -1.00 -74.98 297.23 2.19 -72.79 By element: Atomic # 1 Polarization: 21.02 SS G_CDS: -1.09 Total: 19.93 kcal Atomic # 6 Polarization: -8.84 SS G_CDS: 3.05 Total: -5.79 kcal Atomic # 7 Polarization: -92.35 SS G_CDS: -2.44 Total: -94.79 kcal Atomic # 8 Polarization: -30.90 SS G_CDS: -0.05 Total: -30.95 kcal Atomic # 9 Polarization: -6.02 SS G_CDS: 0.70 Total: -5.32 kcal Atomic # 14 Polarization: 42.09 SS G_CDS: 2.03 Total: 44.12 kcal Total: -74.98 2.19 -72.79 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310201879.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.075 kcal (2) G-P(sol) polarization free energy of solvation -74.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds