Wall clock time and date at job start Mon Mar 30 2020 05:19:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.09001 * 109.47326 * 54.99931 * 3 2 1 5 5 C 1.50699 * 109.47053 * 175.00035 * 3 2 1 6 6 H 1.08004 * 120.00307 * 119.99902 * 5 3 2 7 7 C 1.37884 * 119.99822 * 299.99692 * 5 3 2 8 8 N 1.31514 * 120.00109 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 119.99874 * 180.02562 * 7 5 3 10 10 H 1.48506 * 109.47112 * 59.99775 * 9 7 5 11 11 H 1.48497 * 109.47325 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.47038 * 300.00131 * 9 7 5 13 13 N 1.46499 * 109.46679 * 294.99474 * 3 2 1 14 14 C 1.34785 * 119.99572 * 85.00499 * 13 3 2 15 15 O 1.21563 * 119.99915 * 359.97438 * 14 13 3 16 16 C 1.47707 * 119.99596 * 179.97438 * 14 13 3 17 17 C 1.39607 * 120.13243 * 359.71703 * 16 14 13 18 18 C 1.38511 * 119.79518 * 179.79328 * 17 16 14 19 19 N 1.39860 * 119.96662 * 180.23146 * 18 17 16 20 20 C 1.39061 * 120.06649 * 0.48898 * 18 17 16 21 21 C 1.38110 * 120.26774 * 359.74244 * 20 18 17 22 22 C 1.38321 * 120.20277 * 0.02562 * 21 20 18 23 23 F 1.35102 * 120.03927 * 179.97438 * 22 21 20 24 24 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 26 26 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 27 27 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 28 28 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 29 29 H 0.96997 * 119.99669 * 180.02562 * 8 7 5 30 30 H 0.96999 * 120.00274 * 264.99733 * 13 3 2 31 31 H 1.08000 * 120.10091 * 0.02562 * 17 16 14 32 32 H 0.96999 * 119.99824 * 180.25631 * 19 18 17 33 33 H 0.97004 * 119.99610 * 0.25574 * 19 18 17 34 34 H 1.08001 * 119.86650 * 179.72363 * 20 18 17 35 35 H 1.08008 * 119.90216 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5419 1.4443 0.1238 6 1 4.1473 1.8889 -0.6523 7 6 4.1432 0.8784 1.2281 8 7 3.4062 0.3367 2.1730 9 14 6.0049 0.8813 1.3819 10 1 6.4995 2.2816 1.3821 11 1 6.3978 0.2179 2.6510 12 1 6.5975 0.1473 0.2350 13 7 1.6525 2.0974 -1.2519 14 6 0.4351 2.6644 -1.3670 15 8 -0.3414 2.6319 -0.4323 16 6 0.0446 3.3251 -2.6291 17 6 0.9365 3.3691 -3.7022 18 6 0.5614 3.9868 -4.8839 19 7 1.4503 4.0287 -5.9629 20 6 -0.6959 4.5699 -4.9967 21 6 -1.5786 4.5321 -3.9351 22 6 -1.2174 3.9141 -2.7515 23 9 -2.0832 3.8795 -1.7150 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 0.5139 0.8900 27 1 1.8934 -0.5137 0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 3.8293 -0.0610 2.9499 30 1 2.2720 2.1231 -1.9978 31 1 1.9144 2.9197 -3.6126 32 1 1.1895 4.4644 -6.7894 33 1 2.3275 3.6221 -5.8847 34 1 -0.9833 5.0546 -5.9181 35 1 -2.5535 4.9873 -4.0290 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000310201880.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:19:11 Heat of formation + Delta-G solvation = -61.340359 kcal Electronic energy + Delta-G solvation = -20135.522253 eV Core-core repulsion = 16854.583918 eV Total energy + Delta-G solvation = -3280.938335 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -48.35212 -39.67686 -38.29404 -35.06252 -34.20294 -32.56293 -31.55457 -30.29810 -28.19571 -26.95683 -24.11836 -23.02241 -22.07054 -20.37692 -19.35900 -18.06191 -17.29480 -17.04242 -16.28197 -15.44357 -15.30243 -15.17779 -14.90219 -14.31905 -14.25883 -14.00095 -13.15548 -12.96426 -12.69739 -12.68205 -12.59179 -11.96563 -11.47982 -11.29816 -11.19864 -10.98701 -10.81173 -10.34532 -10.31365 -10.14613 -9.60153 -9.07944 -9.05114 -9.00627 -8.48395 -7.80473 -7.52538 -6.11023 -4.20738 0.91898 1.37509 3.25540 3.29530 3.31325 3.32160 3.65406 4.02672 4.12434 4.36905 4.51304 4.70384 4.88044 5.20013 5.26116 5.42822 5.65236 5.77278 6.05347 6.15047 6.23711 6.43847 6.51195 6.70538 6.76756 7.08619 7.23684 7.28492 7.39875 7.46673 7.57189 7.63447 7.75068 7.91973 8.19705 8.66179 8.78287 9.13044 9.46329 10.94291 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.022805 B = 0.005512 C = 0.004721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1227.493601 B = 5078.937988 C = 5929.197257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.127 4.127 3 C 0.270 3.730 4 H 0.051 0.949 5 C -0.535 4.535 6 H 0.060 0.940 7 C 0.067 3.933 8 N -0.881 5.881 9 Si 0.901 3.099 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.699 5.699 14 C 0.539 3.461 15 O -0.529 6.529 16 C -0.110 4.110 17 C -0.140 4.140 18 C 0.196 3.804 19 N -0.878 5.878 20 C -0.155 4.155 21 C -0.118 4.118 22 C 0.095 3.905 23 F -0.122 7.122 24 H 0.023 0.977 25 H 0.038 0.962 26 H 0.050 0.950 27 H 0.100 0.900 28 H 0.031 0.969 29 H 0.265 0.735 30 H 0.386 0.614 31 H 0.135 0.865 32 H 0.398 0.602 33 H 0.400 0.600 34 H 0.130 0.870 35 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.374 6.444 -16.182 17.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.166 4.166 3 C 0.169 3.831 4 H 0.069 0.931 5 C -0.573 4.573 6 H 0.078 0.922 7 C -0.136 4.136 8 N -0.518 5.518 9 Si 0.729 3.271 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.202 1.202 13 N -0.348 5.348 14 C 0.323 3.677 15 O -0.407 6.407 16 C -0.115 4.115 17 C -0.163 4.163 18 C 0.092 3.908 19 N -0.419 5.419 20 C -0.178 4.178 21 C -0.138 4.138 22 C 0.073 3.927 23 F -0.100 7.100 24 H 0.042 0.958 25 H 0.057 0.943 26 H 0.069 0.931 27 H 0.118 0.882 28 H 0.049 0.951 29 H 0.075 0.925 30 H 0.220 0.780 31 H 0.153 0.847 32 H 0.226 0.774 33 H 0.229 0.771 34 H 0.147 0.853 35 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -4.947 6.286 -15.190 17.168 hybrid contribution 1.439 -0.016 -0.465 1.512 sum -3.508 6.270 -15.655 17.225 Atomic orbital electron populations 1.21847 0.98274 0.98076 1.01352 1.21934 0.92671 0.99684 1.02271 1.18829 0.94226 0.89242 0.80849 0.93116 1.21174 0.90621 1.39195 1.06353 0.92191 1.24880 0.98563 0.94795 0.95367 1.69885 1.35211 1.37434 1.09306 0.86518 0.84888 0.78281 0.77448 1.20210 1.21115 1.20199 1.46426 1.14187 1.55585 1.18570 1.17955 0.83342 0.79840 0.86536 1.90806 1.51182 1.59289 1.39464 1.20245 0.93870 1.01248 0.96102 1.20687 1.00323 1.03742 0.91591 1.17625 0.90174 0.94898 0.88139 1.42419 1.18045 1.66881 1.14517 1.20477 0.92908 1.04783 0.99623 1.20829 1.00771 1.00515 0.91664 1.17480 0.87940 1.01682 0.85633 1.91561 1.67696 1.94418 1.56326 0.95824 0.94287 0.93062 0.88228 0.95050 0.92482 0.78032 0.84720 0.77444 0.77128 0.85253 0.84491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.20 8.51 37.16 0.32 -2.89 16 2 C -0.13 -3.13 5.45 -26.73 -0.15 -3.28 16 3 C 0.27 6.88 2.24 -69.08 -0.15 6.72 16 4 H 0.05 1.50 7.58 -51.93 -0.39 1.11 16 5 C -0.54 -14.09 8.73 -34.44 -0.30 -14.39 16 6 H 0.06 1.50 7.74 -52.48 -0.41 1.09 16 7 C 0.07 1.80 5.29 -17.82 -0.09 1.71 16 8 N -0.88 -24.72 11.29 55.43 0.63 -24.09 16 9 Si 0.90 20.50 29.54 -169.99 -5.02 15.48 16 10 H -0.28 -6.26 7.11 56.52 0.40 -5.85 16 11 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 12 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 13 N -0.70 -14.87 4.97 -55.92 -0.28 -15.14 16 14 C 0.54 11.48 6.34 -12.39 -0.08 11.41 16 15 O -0.53 -13.19 12.46 5.31 0.07 -13.13 16 16 C -0.11 -1.88 5.88 -104.93 -0.62 -2.50 16 17 C -0.14 -1.87 9.38 -38.97 -0.37 -2.24 16 18 C 0.20 2.11 6.75 -83.79 -0.57 1.55 16 19 N -0.88 -6.37 9.10 32.40 0.29 -6.07 16 20 C -0.15 -1.58 9.88 -39.32 -0.39 -1.97 16 21 C -0.12 -1.44 10.00 -39.60 -0.40 -1.83 16 22 C 0.09 1.55 7.28 -38.96 -0.28 1.27 16 23 F -0.12 -2.32 15.54 2.25 0.03 -2.28 16 24 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.04 0.89 5.64 -51.93 -0.29 0.60 16 26 H 0.05 1.26 7.84 -51.93 -0.41 0.86 16 27 H 0.10 2.70 5.95 -51.93 -0.31 2.39 16 28 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 30 H 0.39 7.04 6.57 -40.82 -0.27 6.77 16 31 H 0.14 1.61 6.40 -52.49 -0.34 1.28 16 32 H 0.40 1.98 8.84 -40.82 -0.36 1.62 16 33 H 0.40 2.46 8.84 -40.82 -0.36 2.10 16 34 H 0.13 0.92 8.06 -52.49 -0.42 0.49 16 35 H 0.14 1.31 8.06 -52.48 -0.42 0.89 16 LS Contribution 296.07 15.07 4.46 4.46 Total: -1.00 -31.75 296.07 -6.85 -38.60 By element: Atomic # 1 Polarization: 12.57 SS G_CDS: -3.96 Total: 8.61 kcal Atomic # 6 Polarization: -3.36 SS G_CDS: -3.07 Total: -6.43 kcal Atomic # 7 Polarization: -45.95 SS G_CDS: 0.64 Total: -45.31 kcal Atomic # 8 Polarization: -13.19 SS G_CDS: 0.07 Total: -13.13 kcal Atomic # 9 Polarization: -2.32 SS G_CDS: 0.03 Total: -2.28 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -31.75 -6.85 -38.60 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310201880.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.742 kcal (2) G-P(sol) polarization free energy of solvation -31.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds