Wall clock time and date at job start Mon Mar 30 2020 05:33:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.46708 * 2 1 4 4 C 1.50698 * 109.47016 * 240.00165 * 2 1 3 5 5 H 1.08001 * 119.99691 * 245.27370 * 4 2 1 6 6 C 1.37874 * 120.00249 * 65.27031 * 4 2 1 7 7 N 1.31520 * 120.00206 * 188.16513 * 6 4 2 8 8 Si 1.86803 * 120.00082 * 8.16534 * 6 4 2 9 9 H 1.48497 * 109.47044 * 270.00105 * 8 6 4 10 10 H 1.48493 * 109.47076 * 29.99915 * 8 6 4 11 11 H 1.48498 * 109.46982 * 150.00054 * 8 6 4 12 12 N 1.46494 * 109.47294 * 119.99892 * 2 1 3 13 13 C 1.46504 * 120.00104 * 65.81021 * 12 2 1 14 14 C 1.39315 * 119.99986 * 245.81715 * 12 2 1 15 15 C 1.39084 * 119.62571 * 10.61408 * 14 12 2 16 16 C 1.38285 * 119.17237 * 179.97438 * 15 14 12 17 17 C 1.39410 * 118.44553 * 0.02562 * 16 15 14 18 18 N 1.40048 * 120.40928 * 179.97438 * 17 16 15 19 19 C 1.38637 * 119.18441 * 359.97438 * 17 16 15 20 20 N 1.48005 * 119.62182 * 180.02562 * 19 17 16 21 21 O 1.21801 * 120.00469 * 22.71455 * 20 19 17 22 22 O 1.21809 * 119.99652 * 202.70825 * 20 19 17 23 23 N 1.31996 * 120.75103 * 359.75576 * 19 17 16 24 24 H 1.09001 * 109.46920 * 301.25214 * 1 2 3 25 25 H 1.09000 * 109.47364 * 61.25644 * 1 2 3 26 26 H 1.09003 * 109.46686 * 181.25497 * 1 2 3 27 27 H 0.97004 * 119.99343 * 354.91022 * 7 6 4 28 28 H 1.09004 * 109.46315 * 90.00221 * 13 12 2 29 29 H 1.08995 * 109.47591 * 209.99939 * 13 12 2 30 30 H 1.09000 * 109.47337 * 330.00628 * 13 12 2 31 31 H 1.08001 * 120.41521 * 359.97438 * 15 14 12 32 32 H 1.08000 * 120.77853 * 180.02562 * 16 15 14 33 33 H 0.96993 * 119.99972 * 10.97713 * 18 17 16 34 34 H 0.97002 * 119.99890 * 190.97688 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.5812 -1.6355 -1.1336 6 6 1.7912 -0.1794 -2.4798 7 7 2.0855 -0.8736 -3.5574 8 14 1.0466 1.5261 -2.6420 9 1 -0.4341 1.4186 -2.6750 10 1 1.4567 2.3576 -1.4821 11 1 1.5252 2.1578 -3.8978 12 7 2.0184 -0.6906 1.1961 13 6 1.7725 -2.1248 1.3657 14 6 2.7166 0.0167 2.1725 15 6 2.7560 1.4059 2.1190 16 6 3.4513 2.0985 3.0933 17 6 4.0900 1.3715 4.0969 18 7 4.8061 2.0309 5.1036 19 6 4.0074 -0.0124 4.0860 20 7 4.6812 -0.7938 5.1471 21 8 4.9398 -0.2719 6.2168 22 8 4.9771 -1.9590 4.9506 23 7 3.3303 -0.6407 3.1431 24 1 -0.3633 0.5332 0.8786 25 1 -0.3634 0.4942 -0.9010 26 1 -0.3633 -1.0275 0.0225 27 1 2.5394 -1.7270 -3.4756 28 1 2.5954 -2.6888 0.9265 29 1 1.6984 -2.3577 2.4279 30 1 0.8408 -2.3950 0.8686 31 1 2.2499 1.9372 1.3265 32 1 3.4986 3.1773 3.0771 33 1 4.7312 2.9930 5.2013 34 1 5.3770 1.5255 5.7032 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000310212851.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:33:02 Heat of formation + Delta-G solvation = 37.950529 kcal Electronic energy + Delta-G solvation = -20340.825146 eV Core-core repulsion = 17084.112349 eV Total energy + Delta-G solvation = -3256.712797 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.32878 -41.49860 -38.60759 -37.76896 -36.06882 -34.64767 -33.55225 -32.12391 -30.18307 -28.53696 -26.84424 -26.30014 -24.22611 -23.90355 -21.80979 -20.15175 -19.86979 -19.57248 -19.06659 -18.17884 -18.12017 -17.65334 -16.52677 -16.16308 -15.81914 -15.22551 -14.83070 -14.73395 -14.31738 -14.21179 -13.93330 -13.40809 -13.23105 -12.85280 -12.77645 -12.61417 -12.47451 -12.30958 -12.28958 -11.82668 -11.58168 -11.23419 -10.96205 -10.90460 -10.58640 -9.96488 -8.81986 -8.11436 -6.42890 -1.16157 0.16371 0.25567 0.31056 1.48597 1.58415 1.72771 2.03740 2.47958 2.52314 2.57787 3.08019 3.25616 3.52816 3.72649 3.86386 4.28591 4.44208 4.55247 4.59581 4.64989 4.72845 4.78724 4.88207 4.98901 5.02362 5.29648 5.43181 5.74917 5.81722 6.00142 6.05111 6.39081 6.50789 6.61719 6.73374 6.97430 7.40866 8.63430 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.029263 B = 0.005490 C = 0.005000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.610458 B = 5099.209286 C = 5599.038427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.246 3.754 3 H 0.068 0.932 4 C -0.605 4.605 5 H 0.014 0.986 6 C -0.022 4.022 7 N -0.942 5.942 8 Si 1.085 2.915 9 H -0.258 1.258 10 H -0.227 1.227 11 H -0.297 1.297 12 N -0.594 5.594 13 C 0.124 3.876 14 C 0.374 3.626 15 C -0.130 4.130 16 C -0.081 4.081 17 C 0.204 3.796 18 N -0.834 5.834 19 C 0.089 3.911 20 N 0.052 4.948 21 O -0.151 6.151 22 O -0.219 6.219 23 N -0.523 5.523 24 H 0.067 0.933 25 H 0.059 0.941 26 H 0.044 0.956 27 H 0.249 0.751 28 H 0.015 0.985 29 H 0.063 0.937 30 H 0.068 0.932 31 H 0.177 0.823 32 H 0.212 0.788 33 H 0.424 0.576 34 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.305 13.437 15.036 20.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.144 3.856 3 H 0.085 0.915 4 C -0.644 4.644 5 H 0.033 0.967 6 C -0.219 4.219 7 N -0.578 5.578 8 Si 0.905 3.095 9 H -0.184 1.184 10 H -0.150 1.150 11 H -0.224 1.224 12 N -0.308 5.308 13 C -0.020 4.020 14 C 0.131 3.869 15 C -0.156 4.156 16 C -0.111 4.111 17 C 0.086 3.914 18 N -0.383 5.383 19 C -0.129 4.129 20 N 0.559 4.441 21 O -0.364 6.364 22 O -0.420 6.420 23 N -0.246 5.246 24 H 0.086 0.914 25 H 0.077 0.923 26 H 0.063 0.937 27 H 0.058 0.942 28 H 0.034 0.966 29 H 0.082 0.918 30 H 0.087 0.913 31 H 0.194 0.806 32 H 0.229 0.771 33 H 0.258 0.742 34 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges -1.226 13.754 13.440 19.269 hybrid contribution 1.398 -1.930 1.042 2.601 sum 0.172 11.824 14.482 18.697 Atomic orbital electron populations 1.22380 0.96667 1.01559 1.01154 1.19332 0.91879 0.93735 0.80698 0.91489 1.22462 1.39090 1.09547 0.93298 0.96711 1.27374 0.95952 1.07331 0.91263 1.70958 1.40129 1.14828 1.31891 0.83604 0.77255 0.71023 0.77582 1.18352 1.15009 1.22387 1.46752 1.56787 1.08372 1.18889 1.21134 0.99635 0.80968 1.00256 1.18277 0.91819 0.89264 0.87580 1.22243 1.00496 0.91724 1.01114 1.21559 0.96281 1.02819 0.90426 1.18132 0.93753 0.87353 0.92167 1.42947 1.49355 1.12115 1.33901 1.20385 1.09943 0.86476 0.96102 1.43623 0.98632 1.00924 1.00970 1.94237 1.57580 1.72449 1.12183 1.94572 1.58311 1.01850 1.87296 1.65288 1.12743 1.41649 1.04968 0.91447 0.92256 0.93689 0.94231 0.96623 0.91835 0.91321 0.80609 0.77098 0.74195 0.75456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.62 8.91 71.98 0.64 -4.98 16 2 C 0.25 9.97 2.05 44.25 0.09 10.06 16 3 H 0.07 2.44 3.94 -2.39 -0.01 2.43 16 4 C -0.61 -31.78 8.70 25.60 0.22 -31.56 16 5 H 0.01 0.89 7.44 -2.91 -0.02 0.87 16 6 C -0.02 -1.17 5.41 84.65 0.46 -0.71 16 7 N -0.94 -56.78 13.70 21.45 0.29 -56.49 16 8 Si 1.09 43.18 25.46 68.60 1.75 44.93 16 9 H -0.26 -9.38 6.74 99.48 0.67 -8.71 16 10 H -0.23 -7.07 6.37 99.48 0.63 -6.44 16 11 H -0.30 -12.36 7.11 99.48 0.71 -11.65 16 12 N -0.59 -23.51 2.88 -708.67 -2.04 -25.55 16 13 C 0.12 4.96 9.35 127.77 1.19 6.15 16 14 C 0.37 13.28 7.33 132.97 0.97 14.25 16 15 C -0.13 -3.33 9.24 22.48 0.21 -3.12 16 16 C -0.08 -1.46 10.05 22.56 0.23 -1.24 16 17 C 0.20 4.67 6.75 38.21 0.26 4.93 16 18 N -0.83 -12.66 8.78 -51.00 -0.45 -13.11 16 19 C 0.09 2.95 7.64 129.71 0.99 3.94 16 20 N 0.05 1.81 4.44 -49.60 -0.22 1.59 16 21 O -0.15 -4.55 16.08 18.88 0.30 -4.25 16 22 O -0.22 -8.93 19.10 18.87 0.36 -8.57 16 23 N -0.52 -20.03 9.03 -183.30 -1.66 -21.69 16 24 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 25 H 0.06 2.08 4.55 -2.39 -0.01 2.07 16 26 H 0.04 1.66 6.87 -2.39 -0.02 1.64 16 27 H 0.25 15.54 8.72 -92.71 -0.81 14.73 16 28 H 0.02 0.68 7.97 -2.39 -0.02 0.66 16 29 H 0.06 2.40 7.56 -2.39 -0.02 2.38 16 30 H 0.07 2.63 6.73 -2.39 -0.02 2.62 16 31 H 0.18 3.82 5.96 -2.91 -0.02 3.80 16 32 H 0.21 1.41 8.06 -2.91 -0.02 1.39 16 33 H 0.42 2.89 8.87 -92.71 -0.82 2.07 16 34 H 0.41 7.07 6.02 -92.71 -0.56 6.51 16 Total: -1.00 -72.41 285.94 3.26 -69.15 By element: Atomic # 1 Polarization: 16.61 SS G_CDS: -0.35 Total: 16.26 kcal Atomic # 6 Polarization: -7.54 SS G_CDS: 5.27 Total: -2.28 kcal Atomic # 7 Polarization: -111.17 SS G_CDS: -4.07 Total: -115.24 kcal Atomic # 8 Polarization: -13.49 SS G_CDS: 0.66 Total: -12.82 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 1.75 Total: 44.93 kcal Total: -72.41 3.26 -69.15 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310212851.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.103 kcal (2) G-P(sol) polarization free energy of solvation -72.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.152 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds