Wall clock time and date at job start Mon Mar 30 2020 05:33:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.47002 * 2 1 4 4 C 1.50695 * 109.47256 * 119.99929 * 2 1 3 5 5 H 1.08006 * 119.99628 * 119.99830 * 4 2 1 6 6 C 1.37875 * 120.00493 * 300.00161 * 4 2 1 7 7 N 1.31515 * 119.99819 * 359.97438 * 6 4 2 8 8 Si 1.86793 * 120.00524 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.47146 * 59.99549 * 8 6 4 10 10 H 1.48496 * 109.47573 * 180.02562 * 8 6 4 11 11 H 1.48507 * 109.47079 * 300.00532 * 8 6 4 12 12 N 1.46506 * 109.47300 * 240.00494 * 2 1 3 13 13 C 1.46504 * 119.99612 * 299.99696 * 12 2 1 14 14 C 1.39312 * 120.00082 * 119.99843 * 12 2 1 15 15 C 1.39091 * 119.62312 * 185.00164 * 14 12 2 16 16 C 1.38273 * 119.17242 * 180.02562 * 15 14 12 17 17 C 1.39419 * 118.44620 * 359.97438 * 16 15 14 18 18 N 1.40045 * 120.40883 * 179.97438 * 17 16 15 19 19 C 1.38627 * 119.18215 * 0.02562 * 17 16 15 20 20 N 1.48010 * 119.62403 * 179.97438 * 19 17 16 21 21 O 1.21795 * 119.99856 * 26.15719 * 20 19 17 22 22 O 1.21799 * 120.00081 * 206.16354 * 20 19 17 23 23 N 1.31992 * 120.75493 * 0.25308 * 19 17 16 24 24 H 1.08997 * 109.46805 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.46726 * 299.99851 * 1 2 3 26 26 H 1.08999 * 109.46611 * 60.00050 * 1 2 3 27 27 H 0.96991 * 120.00376 * 179.97438 * 7 6 4 28 28 H 1.08995 * 109.47092 * 270.00280 * 13 12 2 29 29 H 1.08998 * 109.46807 * 30.00149 * 13 12 2 30 30 H 1.09001 * 109.46826 * 149.99609 * 13 12 2 31 31 H 1.07998 * 120.41299 * 0.04392 * 15 14 12 32 32 H 1.07998 * 120.77879 * 179.97438 * 16 15 14 33 33 H 0.96999 * 119.99783 * 190.17396 * 18 17 16 34 34 H 0.96999 * 120.00196 * 10.17124 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6994 -0.2394 2.4827 7 7 0.9437 0.8301 2.6035 8 14 2.3215 -1.1203 4.0079 9 1 3.8065 -1.1210 4.0081 10 1 1.8261 -0.4207 5.2204 11 1 1.8260 -2.5203 4.0076 12 7 2.0184 -0.6905 -1.1963 13 6 1.6645 -2.0931 -1.4281 14 6 2.8193 -0.0134 -2.1132 15 6 3.1924 -0.6424 -3.2964 16 6 3.9879 0.0381 -4.1997 17 6 4.3868 1.3368 -3.8866 18 7 5.1932 2.0635 -4.7714 19 6 3.9762 1.8996 -2.6880 20 7 4.3944 3.2775 -2.3455 21 8 4.6609 4.0707 -3.2304 22 8 4.4722 3.6180 -1.1787 23 7 3.2211 1.2188 -1.8463 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3632 0.5138 -0.8900 27 1 0.7090 1.1613 3.4844 28 1 2.4158 -2.7376 -0.9718 29 1 0.6906 -2.3001 -0.9848 30 1 1.6238 -2.2851 -2.5003 31 1 2.8645 -1.6496 -3.5070 32 1 4.2932 -0.4255 -5.1261 33 1 5.5886 2.9031 -4.4892 34 1 5.3563 1.7273 -5.6665 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000310212852.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:33:05 Heat of formation + Delta-G solvation = 39.689994 kcal Electronic energy + Delta-G solvation = -20422.274611 eV Core-core repulsion = 17165.637242 eV Total energy + Delta-G solvation = -3256.637368 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.27487 -41.39042 -38.39424 -37.67744 -35.93628 -34.78097 -33.41130 -31.30436 -30.39586 -27.56393 -27.31638 -26.82195 -24.46552 -23.44660 -21.76694 -20.20732 -19.80016 -19.08452 -18.44783 -18.15162 -17.94232 -17.41351 -16.68994 -16.13587 -15.85514 -15.11918 -14.70667 -14.60949 -14.34533 -14.09719 -13.43961 -12.97769 -12.86771 -12.76810 -12.68433 -12.60216 -12.55229 -12.35122 -12.26632 -12.12044 -12.06147 -11.23856 -10.99965 -10.69041 -10.43958 -9.84830 -8.22657 -7.92415 -6.27297 -1.08319 0.25094 0.35852 0.40691 1.38968 1.42147 1.49074 2.20744 2.43626 2.59653 2.65351 3.16451 3.35098 3.62195 3.84437 3.94089 4.44882 4.58235 4.71754 4.77972 4.85160 4.90395 5.02589 5.10920 5.13839 5.30086 5.52713 5.64960 5.85351 6.08399 6.10749 6.22203 6.51906 6.67097 6.77348 6.84470 7.18401 7.43637 8.92089 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.021408 B = 0.006237 C = 0.005352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.619094 B = 4488.451999 C = 5230.159947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.274 3.726 3 H 0.016 0.984 4 C -0.534 4.534 5 H 0.057 0.943 6 C 0.013 3.987 7 N -0.919 5.919 8 Si 0.960 3.040 9 H -0.281 1.281 10 H -0.285 1.285 11 H -0.260 1.260 12 N -0.601 5.601 13 C 0.099 3.901 14 C 0.371 3.629 15 C -0.126 4.126 16 C -0.082 4.082 17 C 0.197 3.803 18 N -0.837 5.837 19 C 0.090 3.910 20 N 0.048 4.952 21 O -0.141 6.141 22 O -0.240 6.240 23 N -0.532 5.532 24 H 0.047 0.953 25 H 0.062 0.938 26 H 0.016 0.984 27 H 0.262 0.738 28 H 0.048 0.952 29 H 0.067 0.933 30 H 0.101 0.899 31 H 0.196 0.804 32 H 0.216 0.784 33 H 0.407 0.593 34 H 0.425 0.575 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.461 -7.053 -18.922 20.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.171 3.829 3 H 0.034 0.966 4 C -0.573 4.573 5 H 0.075 0.925 6 C -0.186 4.186 7 N -0.558 5.558 8 Si 0.786 3.214 9 H -0.207 1.207 10 H -0.211 1.211 11 H -0.185 1.185 12 N -0.315 5.315 13 C -0.043 4.043 14 C 0.127 3.873 15 C -0.152 4.152 16 C -0.111 4.111 17 C 0.079 3.921 18 N -0.386 5.386 19 C -0.128 4.128 20 N 0.554 4.446 21 O -0.359 6.359 22 O -0.437 6.437 23 N -0.255 5.255 24 H 0.066 0.934 25 H 0.081 0.919 26 H 0.036 0.964 27 H 0.071 0.929 28 H 0.067 0.933 29 H 0.086 0.914 30 H 0.120 0.880 31 H 0.213 0.787 32 H 0.232 0.768 33 H 0.241 0.759 34 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges 4.842 -7.193 -17.902 19.891 hybrid contribution 0.643 0.625 0.936 1.296 sum 5.485 -6.568 -16.967 19.002 Atomic orbital electron populations 1.21905 0.97890 0.99865 0.99505 1.18433 0.90842 0.92260 0.81386 0.96641 1.21598 1.31427 1.12820 0.91436 0.92496 1.25716 0.95258 0.95665 1.01999 1.70018 1.37600 1.23946 1.24244 0.85586 0.78227 0.79119 0.78512 1.20673 1.21066 1.18474 1.47045 1.50813 1.11855 1.21765 1.21755 1.00966 0.79129 1.02438 1.18490 0.92150 0.86225 0.90433 1.22234 0.98527 1.03522 0.90871 1.21587 0.97856 0.89209 1.02482 1.18183 0.93022 0.93411 0.87473 1.42841 1.52927 1.27107 1.15763 1.20453 1.10709 0.85890 0.95787 1.43846 0.97662 1.02997 1.00067 1.94208 1.51445 1.48028 1.42191 1.94623 1.60213 1.83808 1.05013 1.65296 1.15862 1.10826 1.33469 0.93419 0.91909 0.96448 0.92865 0.93317 0.91398 0.88042 0.78696 0.76763 0.75907 0.74157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.51 8.95 71.98 0.64 -5.87 16 2 C 0.27 14.28 2.67 44.24 0.12 14.40 16 3 H 0.02 0.98 6.82 -2.39 -0.02 0.96 16 4 C -0.53 -29.67 8.37 25.60 0.21 -29.46 16 5 H 0.06 3.07 7.65 -2.91 -0.02 3.05 16 6 C 0.01 0.73 5.30 84.65 0.45 1.18 16 7 N -0.92 -55.20 11.32 21.45 0.24 -54.96 16 8 Si 0.96 44.71 29.54 68.60 2.03 46.74 16 9 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 10 H -0.29 -13.12 7.11 99.48 0.71 -12.42 16 11 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16 12 N -0.60 -24.24 2.88 -708.65 -2.04 -26.28 16 13 C 0.10 2.84 9.52 127.77 1.22 4.06 16 14 C 0.37 13.75 7.38 132.97 0.98 14.73 16 15 C -0.13 -2.78 9.27 22.48 0.21 -2.57 16 16 C -0.08 -1.38 10.04 22.56 0.23 -1.15 16 17 C 0.20 4.90 6.75 38.21 0.26 5.16 16 18 N -0.84 -14.37 8.79 -51.00 -0.45 -14.81 16 19 C 0.09 3.44 7.61 129.70 0.99 4.43 16 20 N 0.05 2.02 4.42 -49.60 -0.22 1.80 16 21 O -0.14 -5.00 16.21 18.89 0.31 -4.69 16 22 O -0.24 -12.04 19.12 18.89 0.36 -11.67 16 23 N -0.53 -23.98 8.66 -183.30 -1.59 -25.57 16 24 H 0.05 2.10 6.66 -2.39 -0.02 2.08 16 25 H 0.06 3.47 6.07 -2.39 -0.01 3.46 16 26 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 27 H 0.26 15.05 8.31 -92.71 -0.77 14.28 16 28 H 0.05 1.37 8.14 -2.39 -0.02 1.36 16 29 H 0.07 2.05 6.43 -2.39 -0.02 2.03 16 30 H 0.10 1.82 5.98 -2.39 -0.01 1.80 16 31 H 0.20 2.49 6.02 -2.91 -0.02 2.48 16 32 H 0.22 0.96 8.06 -2.91 -0.02 0.93 16 33 H 0.41 8.16 6.12 -92.71 -0.57 7.59 16 34 H 0.42 3.35 8.87 -92.71 -0.82 2.53 16 Total: -1.00 -80.41 291.36 3.73 -76.68 By element: Atomic # 1 Polarization: 8.09 SS G_CDS: -0.22 Total: 7.87 kcal Atomic # 6 Polarization: -0.41 SS G_CDS: 5.30 Total: 4.90 kcal Atomic # 7 Polarization: -115.77 SS G_CDS: -4.05 Total: -119.83 kcal Atomic # 8 Polarization: -17.03 SS G_CDS: 0.67 Total: -16.37 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.74 kcal Total: -80.41 3.73 -76.68 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310212852.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.374 kcal (2) G-P(sol) polarization free energy of solvation -80.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.684 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds